View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10185_low_13 (Length: 339)
Name: NF10185_low_13
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10185_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 323
Target Start/End: Complemental strand, 5820563 - 5820241
Alignment:
| Q |
1 |
gagttttccaaaaataagtgtcataagaggctgagataatccattagctacggcacatatgaaaccaatgatcatcaaaatcacgtcaagtttgtcagca |
100 |
Q |
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| T |
5820563 |
gagttttccaaaaataagtgtcataagaggctgagataatccattagctacggcacatatgaaaccaatgatcatcaaaatcacgtcaagtttgtcagca |
5820464 |
T |
|
| Q |
101 |
aaattgaatagtttgtagaaaggaactttttcttcaacttttggtttattttcttcatcctttgcctctggtttttgttccatggctaatggatttaggt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5820463 |
aaattgaatagtttgtagaaaggaactttttcttcagcttttggtttattttcttcatcctttacctctggtttttgttccatggctaatggatttaggt |
5820364 |
T |
|
| Q |
201 |
ttaggagggtacgtaaccttctttacgtnnnnnnnnnnnnnnnnnnnnnctgacaagagtttggtgtgatgaaatagagattcaatattaatgcatgctt |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||| |
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| T |
5820363 |
ttaggagggtacgtaaccttctttacgtagaaaagaaagaaagaaaaaactgacaagagtttggtgtgatgaaatagagattcgacattaatgcatgctt |
5820264 |
T |
|
| Q |
301 |
gcttacatgcaacatctaatttt |
323 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
5820263 |
gcttacatgcaacatctaatttt |
5820241 |
T |
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