View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10185_low_15 (Length: 320)
Name: NF10185_low_15
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10185_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 30099379 - 30099670
Alignment:
| Q |
19 |
cttactgcagctgcaggaacaatagatagaacttttggcactcttgttttgggaaatggtcaaagcattattggttggactttgtttccagcaaatgcta |
118 |
Q |
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| T |
30099379 |
cttactgcagctgcaggaacaatagatagaacttttggcactcttgttttgggaaatggtcaaagcattattggttggactttgtttccagcaaatgcta |
30099478 |
T |
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| Q |
119 |
tagttgaaaatgttctacttgtttacaataacactttatcttcatgcaactcattgaacttgttatctcaacttaacaaaaaagtgattattctctgtga |
218 |
Q |
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| T |
30099479 |
tagttgaaaatgttctacttgtttacaataacactttatcttcatgcaactcattgaacttgttatctcaacttaacaaaaaagtgattattctctgtga |
30099578 |
T |
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| Q |
219 |
tgactcattgtcaaacagaaacaaaacctcggtgtttaaccaaatcaatgttgttacagaagccaatctgttaggggcagtgtttgtctctg |
310 |
Q |
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| T |
30099579 |
tgactcattgtcaaacagaaacaaaacctcagtgtttaaccaaatcaatgttgttacagaagccaatctgttaggggcagtgtttgtctctg |
30099670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 30091534 - 30091353
Alignment:
| Q |
19 |
cttactgcagctgcaggaacaatagatagaacttttggcactcttgttttgggaaatggtcaaagcattattggttggactttgtttccagcaaat---g |
115 |
Q |
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| T |
30091534 |
cttactgtagctgcaggaaccatagatagaacttttggcagccttgttttggggaatggtcaaaacattattggttggactttgtttgcatcaaattcaa |
30091435 |
T |
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| Q |
116 |
ctatagttgaaaatgttctacttgtttacaataacactttatcttcatgcaactcattgaacttgttatctcaacttaacaa |
197 |
Q |
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| T |
30091434 |
ctatagtcgaaaatcttcctcttgtttacgataacactttatcttcatgcaattcagtgaagcgtttatctcaagttaacaa |
30091353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 30087554 - 30087477
Alignment:
| Q |
19 |
cttactgcagctgcaggaacaatagatagaacttttggcactcttgttttgggaaatggtcaaagcattattggttgg |
96 |
Q |
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| T |
30087554 |
cttactgtagctgcaggaaccacagatagaacttttggcagccttgttttgggaaatggtgaaaacattattggttgg |
30087477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 310
Target Start/End: Complemental strand, 30091309 - 30091249
Alignment:
| Q |
250 |
gtgtttaaccaaatcaatgttgttacagaagccaatctgttaggggcagtgtttgtctctg |
310 |
Q |
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| T |
30091309 |
gtgtttgatcaaatcgatgttgttacacaaaccaatatgttaggggcagtgtttctctctg |
30091249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 35171205 - 35171112
Alignment:
| Q |
68 |
tgggaaatggtcaaagcattattggttggactttgtttccagcaa---atgctatagttgaaaatgttctacttgtttacaataacactttatc |
158 |
Q |
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| T |
35171205 |
tgggaagtggtgaaactattgttggttggactttgtttcctgctactaatgctatagttgaaaatcttcaacttgtttacaacaaaactttatc |
35171112 |
T |
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