View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10185_low_17 (Length: 305)

Name: NF10185_low_17
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10185_low_17
NF10185_low_17
[»] chr6 (11 HSPs)
chr6 (1-280)||(6935191-6935470)
chr6 (1-280)||(6921323-6921602)
chr6 (3-287)||(6942942-6943213)
chr6 (3-287)||(6947855-6948139)
chr6 (3-287)||(6954494-6954778)
chr6 (28-246)||(20770502-20770720)
chr6 (28-87)||(17369675-17369734)
chr6 (32-102)||(14749393-14749463)
chr6 (49-96)||(19746715-19746762)
chr6 (49-116)||(34861892-34861959)
chr6 (30-146)||(24254428-24254544)
[»] chr7 (41 HSPs)
chr7 (3-287)||(1985930-1986214)
chr7 (28-287)||(13416911-13417176)
chr7 (16-280)||(15571883-15572162)
chr7 (16-151)||(18514775-18514910)
chr7 (175-273)||(14076520-14076618)
chr7 (175-273)||(14386548-14386646)
chr7 (30-146)||(19344577-19344693)
chr7 (28-99)||(14076677-14076748)
chr7 (28-99)||(14386705-14386776)
chr7 (29-124)||(19604464-19604559)
chr7 (28-97)||(660847-660916)
chr7 (28-124)||(22100467-22100563)
chr7 (28-136)||(6864807-6864914)
chr7 (28-116)||(9807806-9807894)
chr7 (28-104)||(22063636-22063712)
chr7 (49-124)||(22080842-22080917)
chr7 (35-141)||(22021349-22021455)
chr7 (29-98)||(29881256-29881325)
chr7 (28-124)||(20058057-20058153)
chr7 (30-141)||(22028585-22028696)
chr7 (49-124)||(22070085-22070160)
chr7 (28-98)||(19637217-19637287)
chr7 (28-98)||(29454103-29454173)
chr7 (29-98)||(29867236-29867305)
chr7 (30-98)||(12819918-12819986)
chr7 (165-265)||(18514945-18515045)
chr7 (30-102)||(19351071-19351143)
chr7 (30-102)||(19357906-19357978)
chr7 (30-98)||(19722018-19722086)
chr7 (28-104)||(20352089-20352165)
chr7 (171-239)||(24385051-24385119)
chr7 (28-92)||(29874517-29874581)
chr7 (16-98)||(29859454-29859536)
chr7 (44-141)||(16839397-16839494)
chr7 (207-260)||(16839560-16839613)
chr7 (29-102)||(18952906-18952979)
chr7 (29-102)||(18982953-18983026)
chr7 (29-102)||(18997599-18997672)
chr7 (16-105)||(20338917-20339006)
chr7 (16-104)||(20374491-20374579)
chr7 (28-96)||(24002201-24002269)
[»] chr4 (15 HSPs)
chr4 (28-141)||(53774797-53774910)
chr4 (28-141)||(3565701-3565814)
chr4 (28-141)||(8443454-8443567)
chr4 (28-124)||(11970982-11971078)
chr4 (28-124)||(11981683-11981779)
chr4 (28-104)||(3557720-3557796)
chr4 (28-136)||(3560958-3561066)
chr4 (32-105)||(837769-837842)
chr4 (66-141)||(10475164-10475239)
chr4 (22-104)||(6372439-6372521)
chr4 (51-141)||(10464226-10464316)
chr4 (202-265)||(53774685-53774748)
chr4 (29-87)||(6392835-6392893)
chr4 (62-98)||(10468042-10468078)
chr4 (62-98)||(10482181-10482217)
[»] chr2 (13 HSPs)
chr2 (16-124)||(14514874-14514982)
chr2 (30-104)||(18908811-18908885)
chr2 (30-104)||(18920767-18920841)
chr2 (30-103)||(18913559-18913632)
chr2 (28-124)||(554450-554546)
chr2 (44-98)||(25698507-25698561)
chr2 (51-99)||(20975557-20975605)
chr2 (28-100)||(25377072-25377144)
chr2 (209-251)||(20699621-20699663)
chr2 (185-251)||(20712690-20712756)
chr2 (37-98)||(20980604-20980665)
chr2 (183-251)||(14514730-14514798)
chr2 (209-257)||(20967541-20967589)
[»] chr5 (6 HSPs)
chr5 (28-251)||(18964830-18965056)
chr5 (30-141)||(29647633-29647744)
chr5 (30-113)||(29597554-29597637)
chr5 (30-109)||(29642348-29642427)
chr5 (29-104)||(24330900-24330975)
chr5 (49-96)||(23086784-23086831)
[»] chr1 (8 HSPs)
chr1 (22-116)||(50645479-50645573)
chr1 (27-98)||(4570927-4570998)
chr1 (29-104)||(21855384-21855459)
chr1 (29-95)||(4014966-4015032)
chr1 (28-98)||(39379061-39379131)
chr1 (29-98)||(10218985-10219054)
chr1 (16-98)||(17560761-17560843)
chr1 (28-93)||(15961233-15961298)
[»] scaffold0867 (1 HSPs)
scaffold0867 (28-124)||(4669-4765)
[»] chr8 (6 HSPs)
chr8 (62-116)||(42846459-42846513)
chr8 (15-116)||(27618473-27618574)
chr8 (44-96)||(29390288-29390340)
chr8 (44-114)||(11339435-11339505)
chr8 (44-114)||(11345117-11345187)
chr8 (52-96)||(11338600-11338644)
[»] chr3 (4 HSPs)
chr3 (28-92)||(3625740-3625804)
chr3 (28-100)||(25901279-25901351)
chr3 (28-100)||(25915297-25915369)
chr3 (49-103)||(3837904-3837958)
[»] scaffold0354 (1 HSPs)
scaffold0354 (32-87)||(7474-7529)
[»] scaffold0267 (1 HSPs)
scaffold0267 (49-103)||(13385-13439)
[»] scaffold0097 (1 HSPs)
scaffold0097 (185-251)||(16529-16595)


Alignment Details
Target: chr6 (Bit Score: 256; Significance: 1e-142; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 6935191 - 6935470
Alignment:
Q  1 agttttaaaatcttgttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6935191 agttttaaaatcttgttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacataatgg 6935290  T
Q  101 gttttcttaaaatcataagaaaaatagaggcaatccatcaatacagaaagagtaggaaaaccatgtagctcttcatcacaacattgagggagcaacaatt 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  6935291 gttttcttaaaatcataagaaaaatagaggcaatccatcaatccagaaagagtaggaaagccatgtagctcttcatcacaacatcgagggagcaacaatt 6935390  T
Q  201 ttgtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatat 280  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||    
T  6935391 ttgtacatgtctctgtccccaaatcaagtgagatcatcacgaattgttcgactgtaagattcttcaaatgacaattatat 6935470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 6921323 - 6921602
Alignment:
Q  1 agttttaaaatcttgttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgg 100  Q
    |||||||||||  | | ||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||    
T  6921323 agttttaaaattgtttagaagattcgtataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccagataacaaaatgg 6921422  T
Q  101 gttttcttaaaatcataagaaaaatagaggcaatccatcaatacagaaagagtaggaaaaccatgtagctcttcatcacaacattgagggagcaacaatt 200  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |  |||||||||||||||||||||| |||||||||||||||    
T  6921423 gttttcttagaatcataagaaaaatagaggcaatccatcaatacagaaagagttggaacattatgtagctcttcatcacaacatcgagggagcaacaatt 6921522  T
Q  201 ttgtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatat 280  Q
     |||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||| ||||    
T  6921523 gtgtatatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaacaataagatttttcaaatgacaataatat 6921602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 6942942 - 6943213
Alignment:
Q  3 ttttaaaatcttgttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggt 102  Q
    |||||||||| | | ||||||| ||||| ||||||||||||||||  ||| ||||||||| |||||||||||||||||||||| |||||||||||| |||    
T  6942942 ttttaaaatcgtttagaagatttgtatatctaattttaaggaattgcgtctaagattcttcaactccaaattccttcatttgctaaataacaaaataggt 6943041  T
Q  103 tttcttaaaatcataagaaaaatagaggcaatccatcaatacagaaagagtaggaaaaccatgtagctcttcatcacaacattgagggagcaacaatttt 202  Q
    ||||||||||||||||||||||||||||||||||||             ||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6943042 tttcttaaaatcataagaaaaatagaggcaatccat-------------gtaggaaaatcatgtagctcttcatcacaacattgagggagcaacaatttt 6943128  T
Q  203 gtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatatgggtgac 287  Q
    ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  6943129 gtatatgtctctgtccccaaatcaagtgagatcatcacgaattgttcaactgtaagattcttcaaatgacaattatatcggtgac 6943213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 6947855 - 6948139
Alignment:
Q  3 ttttaaaatcttgttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggt 102  Q
    |||||| ||||| | |||||||   |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |||||| |||||    
T  6947855 ttttaatatcttttggaagattcacataactaattttaaggaattgagtccaagattcttcaactccaaattccttcatttgccaaagaacaaagtgggt 6947954  T
Q  103 tttcttaaaatcataagaaaaatagaggcaatccatcaatacagaaagagtaggaaaaccatgtagctcttcatcacaacattgagggagcaacaatttt 202  Q
    |||||| |||||||  |||||| | |||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||| |||||||||||||   |    
T  6947955 tttcttgaaatcatgtgaaaaacaaaggcaatccatcaacacagaaagagttggaacatcatgtagctcttcatcacaacatcgagggagcaacaaccgt 6948054  T
Q  203 gtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatatgggtgac 287  Q
    ||| || ||||||||||||||||||||||||||||||||| |||||||||  ||||||||||||||||||||| |||| ||||||    
T  6948055 gtatatctctctgtccccaaatcaagtgagatcatcacaagttgttcaaccataagattcttcaaatgacaataatatcggtgac 6948139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 6954494 - 6954778
Alignment:
Q  3 ttttaaaatcttgttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggt 102  Q
    |||||||||||| | ||||| | | | ||||||||||||  |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  6954494 ttttaaaatcttttagaagaatcggaaaactaattttaatcaattgagtccaagattcttcaactccaaattccttcatttgccaaataacaaaatgggt 6954593  T
Q  103 tttcttaaaatcataagaaaaatagaggcaatccatcaatacagaaagagtaggaaaaccatgtagctcttcatcacaacattgagggagcaacaatttt 202  Q
    ||| || ||||||||||| ||| |||||||||||||||||||||||||||| | |  |||   ||||||||||||||||||| | ||||||||||| | |    
T  6954594 tttgttgaaatcataagataaacagaggcaatccatcaatacagaaagagttgcagcaccggttagctcttcatcacaacatcgggggagcaacaactgt 6954693  T
Q  203 gtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatatgggtgac 287  Q
    ||| |||||||||||| || |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  6954694 gtatatgtctctgtcctcatatcaagtgagatgatcacaaatttttcaactgtaagattcttcaaatgacaataatatcggtgac 6954778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 28 - 246
Target Start/End: Complemental strand, 20770720 - 20770502
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatag 127  Q
    |||||||||||||||||||| | |||| || |||| || ||||||||||||||||||||| ||||||||||  ||||| |||| ||||| ||||||| |     
T  20770720 ataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatataacaaaataagtttttttaacatcatgagaaaaacaa 20770621  T
Q  128 aggcaatccatcaatacagaaagagtaggaaaaccatgtagctcttcatcacaacattgagggagcaacaattttgtacatgtctctgtccccaaatcaa 227  Q
    |  ||||||||||| ||| |||||||  ||  | || || |   ||||||||||||||||||||| ||||| | | |  |||||||| || |||||||||    
T  20770620 atacaatccatcaacacacaaagagtttgattatcaagtggaaattcatcacaacattgagggagtaacaactgtttgtatgtctctttcgccaaatcaa 20770521  T
Q  228 gtgagatcatcacaaattg 246  Q
    | ||||| |||||||||||    
T  20770520 gggagatgatcacaaattg 20770502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 28 - 87
Target Start/End: Complemental strand, 17369734 - 17369675
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgcca 87  Q
    ||||||||||||||| |||| ||||||||| |||| ||||||||||||||||||||||||    
T  17369734 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgcca 17369675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 32 - 102
Target Start/End: Complemental strand, 14749463 - 14749393
Alignment:
Q  32 ctaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggt 102  Q
    |||||||| ||||||| ||||||||| |||||||||||||||||| ||||   ||| | ||||||||||||    
T  14749463 ctaattttgaggaattgagtccaagactcttgaactccaaattccatcatcctccataaaacaaaatgggt 14749393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 19746715 - 19746762
Alignment:
Q  49 agtccaagattcttgaactccaaattccttcatttgccaaataacaaa 96  Q
    ||||||||| |||||||||||||| | |||||||||||| ||||||||    
T  19746715 agtccaagactcttgaactccaaacttcttcatttgccatataacaaa 19746762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 116
Target Start/End: Original strand, 34861892 - 34861959
Alignment:
Q  49 agtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcat 116  Q
    ||||||||| ||  |||||||||| |||||||||||||| |||||||| |  |||||| |||||||||    
T  34861892 agtccaagactcccgaactccaaactccttcatttgccatataacaaattcagttttcctaaaatcat 34861959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 24254428 - 24254544
Alignment:
Q  30 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatagag 129  Q
    |||| ||||| | ||||| ||||||||||| ||  ||||||||||||  ||| ||||| ||||||||||| ||| |||| | ||  | ||||||| | ||    
T  24254428 aactgattttgatgaattgagtccaagattgttcgactccaaattccgacatctgccatataacaaaatgagttctcttgatatagtgagaaaaacaaag 24254527  T
Q  130 gcaatccatcaatacag 146  Q
    ||| |||||||| ||||    
T  24254528 gcagtccatcaacacag 24254544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 181; Significance: 8e-98; HSPs: 41)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 3 - 287
Target Start/End: Original strand, 1985930 - 1986214
Alignment:
Q  3 ttttaaaatcttgttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggt 102  Q
    |||||| ||||| | |||||||  |||||||||||||||  |||| |||||||||||||| ||| |||||||||||||||||||||| ||||||||||||    
T  1985930 ttttaatatcttctagaagattcatataactaattttaaacaattgagtccaagattcttcaacgccaaattccttcatttgccaaagaacaaaatgggt 1986029  T
Q  103 tttcttaaaatcataagaaaaatagaggcaatccatcaatacagaaagagtaggaaaaccatgtagctcttcatcacaacattgagggagcaacaatttt 202  Q
    |||||| |||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| |||||||||||| || ||||||||||||| | |    
T  1986030 tttcttgaaatcataagaaaaatagaggcaatccatcaacacagaaagagttggaacaccatgtagatcttcatcacaatatcgagggagcaacaactgt 1986129  T
Q  203 gtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatatgggtgac 287  Q
    ||| || ||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  1986130 gtatatctctctgtccccaaatcaagtgagataattacaagttgttcaactgtaagattcttcaaatgacaattatatcggtgac 1986214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 28 - 287
Target Start/End: Original strand, 13416911 - 13417176
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatag 127  Q
    |||||||||||||| ||||| |  |||||| |||| |||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||| |     
T  13416911 ataactaattttaacgaattcaacccaagactcttcaactccaaattccttcatttgccatatgataaaataggttttcttaaaatcataagaaaaacaa 13417010  T
Q  128 aggcaatccatcaatacagaaagagtagga--aa----------accatgtagctcttcatcacaacattgagggagcaacaattttgtacatgtctctg 215  Q
    || |||||  |||| | |||||||||||||  ||          | |  |||||||||| ||||||||| |||| |||||||| | |||| ||||||| |    
T  13417011 agacaatcattcaacatagaaagagtaggaggaagtattggaggatcgcgtagctcttcctcacaacatcgaggtagcaacaactgtgtatatgtctcag 13417110  T
Q  216 tccccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatatgggtgac 287  Q
    ||||||| ||||  ||||| |||||||||||||||| |||||      ||||||||||||||||| ||||||    
T  13417111 tccccaactcaaccgagataatcacaaattgttcaattgtaa------tcaaatgacaattatatcggtgac 13417176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 15571883 - 15572162
Alignment:
Q  16 ttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatca 115  Q
    ||||||||| | ||||||||||||| |||||| |  |||||| |||| ||||||||| ||| |||||||||| || ||||||||||||  ||| ||||||    
T  15571883 ttgaagatttgaataactaattttatggaattgaacccaagactcttcaactccaaactccctcatttgccacatgacaaaatgggttcccttgaaatca 15571982  T
Q  116 taagaaaaatagaggcaatccatcaatacagaaag------agt-----aggaaa----accatgtagctcttcatcacaacattgagggagcaacaatt 200  Q
    ||||||||| | || |||||||| || ||||||||      |||     | ||||    |  || ||  ||||||||||||||| |||| |||| | |||    
T  15571983 taagaaaaacaaagacaatccataaacacagaaagataaagagtttgccaagaaatttgagaatataagtcttcatcacaacatcgaggtagcatcgatt 15572082  T
Q  201 ttgtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgacaattatat 280  Q
     | || |||| ||||||||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||||| ||||    
T  15572083 gtctatatgtttctgtccccaaatcaagcgagattatcacaaattgttcaatcgtaagattcttcaaatgacaataatat 15572162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 18514775 - 18514910
Alignment:
Q  16 ttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatca 115  Q
    |||||||||  ||||||||||||||||||||| ||||||||| | || |||||||||||| | ||||| ||| ||||  |||||| ||||||| ||||||    
T  18514775 ttgaagattcatataactaattttaaggaattgagtccaagagttttcaactccaaattcgtccattttccatataatgaaatggcttttcttgaaatca 18514874  T
Q  116 taagaaaaatagaggcaatccatcaatacagaaaga 151  Q
    ||||||||| | | ||||||||| || |||||||||    
T  18514875 taagaaaaacacatgcaatccattaaaacagaaaga 18514910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 14076618 - 14076520
Alignment:
Q  175 atcacaacattgagggagcaacaattttgtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgaca 273  Q
    |||||||||| ||||||| ||||||| |||| ||||||| |||||||||||||||||||| ||||||||||| ||||  || ||||| ||| |||||||    
T  14076618 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaatcgtgagattattccaatgaca 14076520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 175 - 273
Target Start/End: Complemental strand, 14386646 - 14386548
Alignment:
Q  175 atcacaacattgagggagcaacaattttgtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttcaaatgaca 273  Q
    |||||||||| ||||||| ||||||| |||| ||||||| |||||||||||||||||||| ||||||||||| ||||  || ||||| ||| |||||||    
T  14386646 atcacaacatggagggagtaacaattgtgtatatgtctcagtccccaaatcaagtgagataatcacaaattgctcaatcgtgagattattccaatgaca 14386548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 30 - 146
Target Start/End: Original strand, 19344577 - 19344693
Alignment:
Q  30 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatagag 129  Q
    ||||||||||||| |||| ||||||||||| || ||||||||||||| |||| ||||| ||||||||||| || ||||| | ||  | ||||||| | ||    
T  19344577 aactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatataacaaaatgagtgttcttgagattgtgagaaaaacaaag 19344676  T
Q  130 gcaatccatcaatacag 146  Q
    ||| |||||||||||||    
T  19344677 gcagtccatcaatacag 19344693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 14076748 - 14076677
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatg 99  Q
    ||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||| ||||| |||||    
T  14076748 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14076677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 14386776 - 14386705
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatg 99  Q
    ||||||||||||||| |||| ||||||||| |||| |||||||||||||||||||||||| ||||| |||||    
T  14386776 ataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataacgaaatg 14386705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 19604464 - 19604559
Alignment:
Q  29 taactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaa 124  Q
    ||||||||||||||||||| |||||| || |||| |||||||||||||||||| ||||| |||| ||| || ||||| | |||||||| |||||||    
T  19604464 taactaattttaaggaattgagtccaggagtcttcaactccaaattccttcatctgccatataataaagtgagttttatgaaaatcatgagaaaaa 19604559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 28 - 97
Target Start/End: Original strand, 660847 - 660916
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaa 97  Q
    |||||||||||||||||||| ||||||||| |||| ||||| |||||||||||| ||||| |||||||||    
T  660847 ataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatataacaaaa 660916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 22100563 - 22100467
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaa 124  Q
    |||||||||||| |  || | ||||||||| |||||||||||||||| |||||||||||| |||| |||||| ||||| || ||||||| |||||||    
T  22100563 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaa 22100467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 6864807 - 6864914
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatag 127  Q
    ||||||| |||||||||| | ||||||||| |||| |||||||||||||||||||  ||| || || ||||| ||||  || ||||||| ||||||||||    
T  6864807 ataactagttttaaggaactgagtccaagactcttcaactccaaattccttcattaaccatattac-aaatgagtttgtttgaaatcatgagaaaaatag 6864905  T
Q  128 aggcaatcc 136  Q
    || ||||||    
T  6864906 agacaatcc 6864914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 9807894 - 9807806
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcat 116  Q
    |||| ||||| |||||| |||  ||||||| |||| |||||||||||||||||| ||||| ||||| |||| ||||||||| |||||||    
T  9807894 ataattaattgtaaggagtttcatccaagactcttcaactccaaattccttcatctgccatataacgaaatcggttttcttcaaatcat 9807806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 22063712 - 22063636
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttt 104  Q
    |||||||||||| |  || | ||||||||| ||||||| ||||||||||||||||||||| ||||||||||| ||||    
T  22063712 ataactaattttgaataactgagtccaagactcttgaaatccaaattccttcatttgccatataacaaaatgagttt 22063636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 22080917 - 22080842
Alignment:
Q  49 agtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaa 124  Q
    ||||||||| |||||||||||||||| |||||||||||| |||| |||||| ||||  || ||||||| |||||||    
T  22080917 agtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagtttgtttgaaatcatgagaaaaa 22080842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 35 - 141
Target Start/End: Complemental strand, 22021455 - 22021349
Alignment:
Q  35 attttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatagaggcaat 134  Q
    |||||||| |||| |||||||||||||| ||||||| | ||| |||| ||||| ||||| |||||||||||||| | |  || ||||||| | | |||||    
T  22021455 attttaagtaattgagtccaagattcttcaactccataatccatcatctgccatataaccaaatgggttttcttcacaagatgagaaaaacaaatgcaat 22021356  T
Q  135 ccatcaa 141  Q
    |||||||    
T  22021355 ccatcaa 22021349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 29881325 - 29881256
Alignment:
Q  29 taactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaat 98  Q
    ||||||||| ||||||||| ||||||||| |||| ||| ||||||| |||||||||||||| || |||||    
T  29881325 taactaattctaaggaattgagtccaagaatcttcaaccccaaatttcttcatttgccaaacaataaaat 29881256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 20058057 - 20058153
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaa 124  Q
    ||||||||||||||| |||| |  |||||| |||| |||||  ||||||| ||||| ||| |||||||||||  ||| |||||||||||| ||||||    
T  20058057 ataactaattttaagaaattgacaccaagactcttcaactctgaattcctccattttccatataacaaaatgactttgcttaaaatcatacgaaaaa 20058153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 22028696 - 22028585
Alignment:
Q  30 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatagag 129  Q
    ||||||| ||||| |||| ||||||||| |||| ||||||| | ||| |||||| ||| |||||||||||||||| ||| |   | | ||||||| | ||    
T  22028696 aactaatcttaagtaattgagtccaagactcttcaactccataatccgtcattttccatataacaaaatgggtttccttgaccacttcagaaaaacaaag 22028597  T
Q  130 gcaatccatcaa 141  Q
    ||||||||||||    
T  22028596 gcaatccatcaa 22028585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 124
Target Start/End: Complemental strand, 22070160 - 22070085
Alignment:
Q  49 agtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaa 124  Q
    ||||||||| |||||||||||||||| |||||||||||| |||| |||||| |||   || ||||||| |||||||    
T  22070160 agtccaagactcttgaactccaaattgcttcatttgccatataataaaatgagttcgtttgaaatcatgagaaaaa 22070085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 19637217 - 19637287
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaat 98  Q
    |||||||||||||||||    | |||| || ||||||||||||||||||||||||||||| |||| |||||    
T  19637217 ataactaattttaaggagccgaatccacgactcttgaactccaaattccttcatttgccatataataaaat 19637287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 29454103 - 29454173
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaat 98  Q
    |||||||||||||| ||||| ||||||||| |||| ||||||||||| | ||||  |||| ||||||||||    
T  29454103 ataactaattttaaagaattgagtccaagaatcttcaactccaaatttcatcatccgccatataacaaaat 29454173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 29867305 - 29867236
Alignment:
Q  29 taactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaat 98  Q
    ||||||||| ||||||||| ||||||||| |||| ||| || |||| |||||||||||| |||| |||||    
T  29867305 taactaattctaaggaattgagtccaagaatcttcaaccccgaatttcttcatttgccatataataaaat 29867236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 98
Target Start/End: Original strand, 12819918 - 12819986
Alignment:
Q  30 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaat 98  Q
    |||| ||||||||||||| |||||| |||| || ||||||||||||| |||| ||||| | ||||||||    
T  12819918 aactgattttaaggaattgagtccaggattgttcaactccaaattccgtcatctgccatacaacaaaat 12819986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 265
Target Start/End: Original strand, 18514945 - 18515045
Alignment:
Q  165 gtagctcttcatcacaacattgagggagcaacaattttgtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaactgtaagattctt 264  Q
    ||||||||| || |||| || |||||||||| || | |||| |||||||||||  ||||||||| ||||  || ||| |||||||||  |||||||||||    
T  18514945 gtagctctttattacaagatcgagggagcaagaactgtgtatatgtctctgtcttcaaatcaagcgagacaataacatattgttcaatggtaagattctt 18515044  T
Q  265 c 265  Q
    |    
T  18515045 c 18515045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Original strand, 19351071 - 19351143
Alignment:
Q  30 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggt 102  Q
    |||||||||| ||||||  ||||||||| || | ||||||||||||| |||| ||||| | ||||||||||||    
T  19351071 aactaattttgaggaatggagtccaagactcctcaactccaaattccatcatctgccataaaacaaaatgggt 19351143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 102
Target Start/End: Complemental strand, 19357978 - 19357906
Alignment:
Q  30 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggt 102  Q
    |||||||||| | ||||| ||||||||| |||||||||||||||||| |||| | ||| | ||| ||||||||    
T  19357978 aactaatttttaagaattgagtccaagactcttgaactccaaattccatcatcttccataaaacgaaatgggt 19357906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 30 - 98
Target Start/End: Complemental strand, 19722086 - 19722018
Alignment:
Q  30 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaat 98  Q
    |||| ||||| ||||||| ||||||||| |||||||||||||||||| |||| | ||| | ||||||||    
T  19722086 aactgattttgaggaattgagtccaagaatcttgaactccaaattccatcatcttccataaaacaaaat 19722018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 20352165 - 20352089
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttt 104  Q
    ||||||||||||||  | || |||||| || |||| |||||||||||||||||||| ||| || |||||||| ||||    
T  20352165 ataactaattttaaaaagttgagtccatgaatcttcaactccaaattccttcatttcccatattacaaaatgagttt 20352089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 239
Target Start/End: Complemental strand, 24385119 - 24385051
Alignment:
Q  171 cttcatcacaacattgagggagcaacaattttgtacatgtctctgtccccaaatcaagtgagatcatca 239  Q
    |||||||| ||| ||||||| ||||||||| |||  || ||||||||||||||| ||||||||| ||||    
T  24385119 cttcatcagaaccttgagggggcaacaattgtgtgtatttctctgtccccaaattaagtgagatgatca 24385051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 29874581 - 29874517
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataa 92  Q
    ||||||||||||||| |||  ||||||||| |||| ||| ||||||| |||||||||||| ||||    
T  29874581 ataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatataa 29874517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Complemental strand, 29859536 - 29859454
Alignment:
Q  16 ttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaat 98  Q
    ||||||||||  ||||||||||||||| |||   |||||||| |||| ||||||||||| |||||| | ||| ||||| ||||    
T  29859536 ttgaagattgtgataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatataacgaaat 29859454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 44 - 141
Target Start/End: Original strand, 16839397 - 16839494
Alignment:
Q  44 aatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatagaggcaatccatcaa 141  Q
    |||| ||||||||| |||||||||||| | ||  |||| | ||| ||||||| ||| |||||||||| | ||| ||||||| | ||||| ||||||||    
T  16839397 aattgagtccaagactcttgaactccataatctgtcatcttccatataacaagatgagttttcttaacaacatgagaaaaacaaaggcagtccatcaa 16839494  T

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Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 260
Target Start/End: Original strand, 16839560 - 16839613
Alignment:
Q  207 atgtctctgtccccaaatcaagtgagatcatcacaaattgttcaactgtaagat 260  Q
    ||||||| || |||||||||||||| || ||||||||||| ||||| |||||||    
T  16839560 atgtctccgtgcccaaatcaagtgaaataatcacaaattgctcaacagtaagat 16839613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 18952906 - 18952979
Alignment:
Q  29 taactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggt 102  Q
    ||||||||||||||||| | |||||| || |  | |||||||||||||||||| ||||| || | |||||||||    
T  18952906 taactaattttaaggaactgagtccatgacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18952979  T

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Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 18982953 - 18983026
Alignment:
Q  29 taactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggt 102  Q
    ||||||||||||||||| | |||||| || |  | |||||||||||||||||| ||||| || | |||||||||    
T  18982953 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18983026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 102
Target Start/End: Original strand, 18997599 - 18997672
Alignment:
Q  29 taactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggt 102  Q
    ||||||||||||||||| | |||||| || |  | |||||||||||||||||| ||||| || | |||||||||    
T  18997599 taactaattttaaggaactgagtccaggacttgtcaactccaaattccttcatctgccatatgataaaatgggt 18997672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 105
Target Start/End: Complemental strand, 20339006 - 20338917
Alignment:
Q  16 ttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggtttt 105  Q
    |||||||||  | ||||| |||| || || || ||||||||| |||| |||||| ||||||||||||| ||| || |||||||| |||||    
T  20339006 ttgaagattattgtaactgatttgaaagagttgagtccaagaatcttcaactcctaattccttcattttccatattacaaaatgagtttt 20338917  T

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Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 104
Target Start/End: Original strand, 20374491 - 20374579
Alignment:
Q  16 ttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttt 104  Q
    |||||||||  |||||||||||||||  | || | |||| || |||  |||||||||||||||||||| ||| || |||||||| ||||    
T  20374491 ttgaagattattataactaattttaaaaagttgaatccatgaatctccaactccaaattccttcatttcccatattacaaaatgagttt 20374579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 24002269 - 24002201
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaa 96  Q
    ||||||||| ||||| |||| ||||||||| |||||||||||  | |||||||| ||||| | ||||||    
T  24002269 ataactaatcttaagtaattgagtccaagactcttgaactccgtactccttcatatgccataaaacaaa 24002201  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 53774910 - 53774797
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatag 127  Q
    |||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||| ||||||||||| ||||  |||||||||||||||||| |     
T  53774910 ataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatataacaaaatgagtttctttaaaatcataagaaaaacaa 53774811  T
Q  128 aggcaatccatcaa 141  Q
    |  |||||||||||    
T  53774810 atacaatccatcaa 53774797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 141
Target Start/End: Complemental strand, 3565814 - 3565701
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatag 127  Q
    ||||||||||||||| |||| ||||||||| |||| ||| |||||||||||||| ||||| |||| ||||| |||||||||| ||  |||||||||| |     
T  3565814 ataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaatcggttttcttataacaataagaaaaacaa 3565715  T
Q  128 aggcaatccatcaa 141  Q
    ||||| ||| ||||    
T  3565714 aggcagtccctcaa 3565701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 28 - 141
Target Start/End: Original strand, 8443454 - 8443567
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatag 127  Q
    ||||||||||||||  |||| | ||||||| || ||||||||||| |||||||| |||||||||||| |||| ||| |||| ||||||||||||||| |     
T  8443454 ataactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatctgccaaataacataatgagttctcttgaaatcataagaaaaacaa 8443553  T
Q  128 aggcaatccatcaa 141  Q
    || || ||||||||    
T  8443554 agacagtccatcaa 8443567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 11970982 - 11971078
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaa 124  Q
    |||||||||| |||| |||| ||||||||| ||||  ||||||||||||||||||||||| ||||||||||| ||||  | |||||||| |||||||    
T  11970982 ataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatataacaaaatgagtttgttcaaaatcatgagaaaaa 11971078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 11981683 - 11981779
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaa 124  Q
    ||||||||||||||| |||  |||||| || ||||  ||||||||||||||||||||||| ||||||||||| ||||  | |||||||| |||||||    
T  11981683 ataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatataacaaaatgagtttgttgaaaatcatgagaaaaa 11981779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 3557796 - 3557720
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttt 104  Q
    ||||||||||||||| |||| ||||||||| |||| ||| |||||||||||||| ||||| |||| ||||| |||||    
T  3557796 ataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatataataaaatcggttt 3557720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 136
Target Start/End: Original strand, 3560958 - 3561066
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatag 127  Q
    ||||||||||||||| |||| ||||||||| |||| ||| |||||||  ||||| |||||||||| ||||| ||||| |||  ||  |||||||||| |     
T  3560958 ataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatctgccaaataataaaatcggtttccttgtaagaataagaaaaacaa 3561057  T
Q  128 aggcaatcc 136  Q
    |||||||||    
T  3561058 aggcaatcc 3561066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 837842 - 837769
Alignment:
Q  32 ctaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggtttt 105  Q
    ||||||||||  |||| | ||||||| |||||||| ||||| | |||||||||||| |||||||||||||||||    
T  837842 ctaattttaaataattgaatccaagactcttgaacaccaaaattcttcatttgccatataacaaaatgggtttt 837769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 10475239 - 10475164
Alignment:
Q  66 ctccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatagaggcaatccatcaa 141  Q
    ||||||| |||||||||||||| |||||||||||||| || |  ||||||||| ||||| | || |||||||||||    
T  10475239 ctccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10475164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 104
Target Start/End: Complemental strand, 6372521 - 6372439
Alignment:
Q  22 attggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttt 104  Q
    |||| ||||||||||||||   |||| | || |||| |||||||||||| | |||||||||||||| |||| |||||||||||    
T  6372521 attgttataactaattttatataattgaatctaagactcttgaactccagaatccttcatttgccatataataaaatgggttt 6372439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 141
Target Start/End: Complemental strand, 10464316 - 10464226
Alignment:
Q  51 tccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatagaggcaatccatcaa 141  Q
    ||||||| || ||| | ||||| |||||||||||||| |||||||||||||| || |  ||||||||| ||||| | || |||||||||||    
T  10464316 tccaagactcctgatccccaaaatccttcatttgccatataacaaaatgggtattttggaaatcataacaaaaacaaagacaatccatcaa 10464226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 202 - 265
Target Start/End: Complemental strand, 53774748 - 53774685
Alignment:
Q  202 tgtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaactgtaagattcttc 265  Q
    |||| ||||||||||| |||||||||| || || ||||||||||||||   |||||||||||||    
T  53774748 tgtatatgtctctgtctccaaatcaagcgaaataatcacaaattgttcggttgtaagattcttc 53774685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 6392893 - 6392835
Alignment:
Q  29 taactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgcca 87  Q
    |||||||||||||  |||| | ||||||| || ||||||||||| ||||||||||||||    
T  6392893 taactaattttaaataattgaatccaagactcgtgaactccaaaatccttcatttgcca 6392835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 10468078 - 10468042
Alignment:
Q  62 tgaactccaaattccttcatttgccaaataacaaaat 98  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  10468078 tgaactccaaaatccttcatttgccatataacaaaat 10468042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 10482217 - 10482181
Alignment:
Q  62 tgaactccaaattccttcatttgccaaataacaaaat 98  Q
    ||||||||||| |||||||||||||| ||||||||||    
T  10482217 tgaactccaaaatccttcatttgccatataacaaaat 10482181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 124
Target Start/End: Complemental strand, 14514982 - 14514874
Alignment:
Q  16 ttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatca 115  Q
    |||||||||  ||||||||||||||||||||| ||||||||| |||| |||||||||||| | ||||| ||| ||||||| |||||||||||| ||||||    
T  14514982 ttgaagattcatataactaattttaaggaattgagtccaagaatcttcaactccaaattcatccattttccatataacaagatgggttttcttgaaatca 14514883  T
Q  116 taagaaaaa 124  Q
    |||||||||    
T  14514882 taagaaaaa 14514874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 18908811 - 18908885
Alignment:
Q  30 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttt 104  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||| |||| | ||| ||||||||||||||||    
T  18908811 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18908885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 18920767 - 18920841
Alignment:
Q  30 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttt 104  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||| |||| | ||| ||||||||||||||||    
T  18920767 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggttt 18920841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 18913559 - 18913632
Alignment:
Q  30 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggtt 103  Q
    |||||||||| ||||||| ||||||||| |||||||||||||||||| |||| | ||| |||||||||||||||    
T  18913559 aactaattttgaggaattgagtccaagactcttgaactccaaattccatcatcttccatataacaaaatgggtt 18913632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 124
Target Start/End: Complemental strand, 554546 - 554450
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaa 124  Q
    ||||||||||||||| |||| ||||||||| |||| ||||||| ||||  |||||||||| |||| || |||||||  || |||||| | |||||||    
T  554546 ataactaattttaagtaattgagtccaagactctttaactccatattctatcatttgccatataataagatgggttccctcaaaatcgtgagaaaaa 554450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 44 - 98
Target Start/End: Complemental strand, 25698561 - 25698507
Alignment:
Q  44 aatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaat 98  Q
    |||||||||||||| |||| ||||||||||||  |||||||||| ||||||||||    
T  25698561 aatttagtccaagagtcttcaactccaaattctctcatttgccatataacaaaat 25698507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 20975605 - 20975557
Alignment:
Q  51 tccaagattcttgaactccaaattccttcatttgccaaataacaaaatg 99  Q
    ||||||| |||| ||||||||||||| |||||||||| |||||||||||    
T  20975605 tccaagaatcttcaactccaaattccctcatttgccatataacaaaatg 20975557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Complemental strand, 25377144 - 25377072
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgg 100  Q
    ||||||||||||||  |||| | ||||||| |||||||||||||| ||||||||   ||| ||||||||||||    
T  25377144 ataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatcatccatataacaaaatgg 25377072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 209 - 251
Target Start/End: Original strand, 20699621 - 20699663
Alignment:
Q  209 gtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 251  Q
    |||||||| ||||||||||||||||| ||||||||||| ||||    
T  20699621 gtctctgttcccaaatcaagtgagataatcacaaattgatcaa 20699663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 20712690 - 20712756
Alignment:
Q  185 tgagggagcaacaattttgtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 251  Q
    ||||||||||||| || |||  |||||||  |||||||||| || ||||| ||||||||||||||||    
T  20712690 tgagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaattgttcaa 20712756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 20980665 - 20980604
Alignment:
Q  37 tttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaat 98  Q
    ||||||||| ||||||||||| |||| ||||| ||||||  |||||| ||| ||||||||||    
T  20980665 tttaaggaacttagtccaagactcttcaactctaaattctgtcattttccatataacaaaat 20980604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 251
Target Start/End: Complemental strand, 14514798 - 14514730
Alignment:
Q  183 attgagggagcaacaattttgtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 251  Q
    ||||||||||||| || | |||| |||||||||||| ||||||||| ||||  |  |||||||||||||    
T  14514798 attgagggagcaagaactgtgtatatgtctctgtcctcaaatcaagcgagacaaaaacaaattgttcaa 14514730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 209 - 257
Target Start/End: Complemental strand, 20967589 - 20967541
Alignment:
Q  209 gtctctgtccccaaatcaagtgagatcatcacaaattgttcaactgtaa 257  Q
    |||||||||||||||||||| || || ||||||||||| ||||| ||||    
T  20967589 gtctctgtccccaaatcaagggaaatgatcacaaattgctcaacagtaa 20967541  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 28 - 251
Target Start/End: Original strand, 18964830 - 18965056
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatag 127  Q
    ||||| ||||||||| |||| ||||||||| |||| |||||||||||||||||||||||| ||||  ||||| ||||| | || ||||| || |||| |     
T  18964830 ataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatataatgaaatgagttttttcaagatcatgagtaaaacaa 18964929  T
Q  128 aggcaatccatcaatacagaaagagtaggaaaacca---tgtagctcttcatcacaacattgagggagcaacaattttgtacatgtctctgtccccaaat 224  Q
    ||||||| |||||||||| |||| || |||  | ||    || ||   |||||||||||| ||||||| ||||| | |||| |||||||  |||||| ||    
T  18964930 aggcaattcatcaatacacaaagggtcggagtatcaagcggttgcaactcatcacaacatggagggagtaacaactgtgtaaatgtctccatccccagat 18965029  T
Q  225 caagtgagatcatcacaaattgttcaa 251  Q
    |||||||||| ||||||||||| ||||    
T  18965030 caagtgagataatcacaaattgctcaa 18965056  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 30 - 141
Target Start/End: Complemental strand, 29647744 - 29647633
Alignment:
Q  30 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaatagag 129  Q
    |||||||||||||||||| ||||||||||| || || |||||||||  |||||||||| ||||||||||| |||||||||| ||  | ||||||| | ||    
T  29647744 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacaaaatgagttttcttaagatggtgagaaaaacaaag 29647645  T
Q  130 gcaatccatcaa 141  Q
    ||||||||||||    
T  29647644 gcaatccatcaa 29647633  T

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Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 113
Target Start/End: Original strand, 29597554 - 29597637
Alignment:
Q  30 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaat 113  Q
    |||||||||||||||||| ||||||||||| || ||||||||||||  |||||||||| ||||||||||| |||| ||| ||||    
T  29597554 aactaattttaaggaattgagtccaagattgttcaactccaaattcaatcatttgccatataacaaaatgagtttccttgaaat 29597637  T

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Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 30 - 109
Target Start/End: Complemental strand, 29642427 - 29642348
Alignment:
Q  30 aactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttctta 109  Q
    |||||||||||||||||| ||||||||||| || || |||||||||  |||||||||| ||||| ||||| |||||||||    
T  29642427 aactaattttaaggaattgagtccaagattgttcaaatccaaattctatcatttgccatataacgaaatgagttttctta 29642348  T

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Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 24330900 - 24330975
Alignment:
Q  29 taactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttt 104  Q
    ||||||| |||||||| || ||||||||| |||| ||| |||||||||||||| | ||| |||||||||| |||||    
T  24330900 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 24330975  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 49 - 96
Target Start/End: Complemental strand, 23086831 - 23086784
Alignment:
Q  49 agtccaagattcttgaactccaaattccttcatttgccaaataacaaa 96  Q
    ||||||||| |||||||||||||| |||||||| ||||| ||||||||    
T  23086831 agtccaagactcttgaactccaaactccttcatctgccatataacaaa 23086784  T

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Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 50645479 - 50645573
Alignment:
Q  22 attggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcat 116  Q
    |||| |||||||||||||||  |||| | ||||||| |||||||||||||| |||||||||||||| ||||||||||| |||  || ||||||||    
T  50645479 attgttataactaattttaaataattgaatccaagactcttgaactccaaaatccttcatttgccacataacaaaatgagttccctcaaaatcat 50645573  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 27 - 98
Target Start/End: Complemental strand, 4570998 - 4570927
Alignment:
Q  27 tataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaat 98  Q
    |||||||||||||||| |||| ||||||||| |||| ||| ||||||| |||||||||||| ||||||||||    
T  4570998 tataactaattttaagcaattgagtccaagaatcttcaaccccaaatttcttcatttgccatataacaaaat 4570927  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 104
Target Start/End: Original strand, 21855384 - 21855459
Alignment:
Q  29 taactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttt 104  Q
    ||||||| |||||||| || ||||||||| |||| ||| |||||||||||||| | ||| |||||||||| |||||    
T  21855384 taactaactttaaggagttgagtccaagaatcttcaaccccaaattccttcatctcccatataacaaaatcggttt 21855459  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 95
Target Start/End: Original strand, 4014966 - 4015032
Alignment:
Q  29 taactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaa 95  Q
    ||||||| ||||||||||| ||||||||| |||| ||| ||||||| |||||| ||||| |||||||    
T  4014966 taactaactttaaggaattgagtccaagaatcttcaaccccaaatttcttcatctgccatataacaa 4015032  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 28 - 98
Target Start/End: Original strand, 39379061 - 39379131
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaat 98  Q
    |||||| |||||||| |||| ||||||||| |||| ||| |||||||||||||| ||||| |||| |||||    
T  39379061 ataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatataataaaat 39379131  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 98
Target Start/End: Complemental strand, 10219054 - 10218985
Alignment:
Q  29 taactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaat 98  Q
    |||||||||||||| |||| ||||||||| |||| ||  ||||||| |||||||||||| | ||||||||    
T  10219054 taactaattttaagtaattgagtccaagaatcttcaatcccaaatttcttcatttgccatacaacaaaat 10218985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 17560761 - 17560843
Alignment:
Q  16 ttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaat 98  Q
    |||||||| | ||||||||||| ||||||||   |||||||| |||| ||| ||||||| |||||| ||||| ||||| ||||    
T  17560761 ttgaagatcgttataactaattataaggaatggtgtccaagaatcttcaaccccaaatttcttcatgtgccatataaccaaat 17560843  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 93
Target Start/End: Complemental strand, 15961298 - 15961233
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataac 93  Q
    |||| ||| ||||| ||||| |||||||||||||| | ||||||||| |||||||| ||| |||||    
T  15961298 ataattaactttaaagaattgagtccaagattcttcagctccaaatttcttcattttccatataac 15961233  T

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Target: scaffold0867 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 124
Target Start/End: Original strand, 4669 - 4765
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcataagaaaaa 124  Q
    |||||||||||| |  || | ||||||||| |||||||||||||||| |||||||||||| |||| |||||| ||||| || ||||||| |||||||    
T  4669 ataactaattttgaataactgagtccaagactcttgaactccaaatttcttcatttgccatataataaaatgagtttttttgaaatcatgagaaaaa 4765  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 116
Target Start/End: Original strand, 42846459 - 42846513
Alignment:
Q  62 tgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatcat 116  Q
    ||||||||||| ||||||||||||||||||||||||||||||| || ||||||||    
T  42846459 tgaactccaaaatccttcatttgccaaataacaaaatgggtttcctcaaaatcat 42846513  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 27618574 - 27618473
Alignment:
Q  15 gttgaagattggtataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatc 114  Q
    ||||||||||   |||||||| |||||| || | ||||||||| |||| |||||| | ||| | ||||| ||| ||||||||||| |||| |||||||||    
T  27618574 gttgaagattctgataactaactttaagcaactgagtccaagactcttcaactccgagttcttccattttccatataacaaaatgagtttgcttaaaatc 27618475  T
Q  115 at 116  Q
    ||    
T  27618474 at 27618473  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 29390340 - 29390288
Alignment:
Q  44 aatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaa 96  Q
    |||||||| |||||||||| ||||||||||||| |||| ||||| ||||||||    
T  29390340 aatttagttcaagattcttcaactccaaattccctcatctgccatataacaaa 29390288  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 11339435 - 11339505
Alignment:
Q  44 aatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatc 114  Q
    |||| ||||||||||||||||| |||||| ||  |||||||||| |||||||| || |||| ||| |||||    
T  11339435 aattgagtccaagattcttgaaatccaaactcgctcatttgccatataacaaattgagtttccttgaaatc 11339505  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 11345117 - 11345187
Alignment:
Q  44 aatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggttttcttaaaatc 114  Q
    |||| ||||||||||||||||| |||||| || | ||||||||| |||||||| || |||| ||| |||||    
T  11345117 aattgagtccaagattcttgaaatccaaactcttccatttgccatataacaaattgagtttccttgaaatc 11345187  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 11338600 - 11338644
Alignment:
Q  52 ccaagattcttgaactccaaattccttcatttgccaaataacaaa 96  Q
    |||||||||||||| |||||| || ||||||||||| ||||||||    
T  11338600 ccaagattcttgaaatccaaactctttcatttgccatataacaaa 11338644  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 3625804 - 3625740
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataa 92  Q
    ||||||||||||||| |||| ||||||||| |||| ||| ||||||| |||||||||||| ||||    
T  3625804 ataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatataa 3625740  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 25901279 - 25901351
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgg 100  Q
    |||||||||||| |  |||| | ||||||| |||||||||| ||| |||||||||| ||| ||||||||||||    
T  25901279 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25901351  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 25915297 - 25915369
Alignment:
Q  28 ataactaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgg 100  Q
    |||||||||||| |  |||| | ||||||| |||||||||| ||| |||||||||| ||| ||||||||||||    
T  25915297 ataactaatttttaacaattgaatccaagactcttgaactcgaaaatccttcattttccatataacaaaatgg 25915369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 3837958 - 3837904
Alignment:
Q  49 agtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggtt 103  Q
    ||||||||| |||||||||||||| || ||||||| ||| | |||||||||||||    
T  3837958 agtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 3837904  T

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Target: scaffold0354 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 32 - 87
Target Start/End: Complemental strand, 7529 - 7474
Alignment:
Q  32 ctaattttaaggaatttagtccaagattcttgaactccaaattccttcatttgcca 87  Q
    |||||||||||||||| |  |||||| || | ||||||||||||||||||||||||    
T  7529 ctaattttaaggaattgaacccaagactcatcaactccaaattccttcatttgcca 7474  T

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Target: scaffold0267 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 103
Target Start/End: Complemental strand, 13439 - 13385
Alignment:
Q  49 agtccaagattcttgaactccaaattccttcatttgccaaataacaaaatgggtt 103  Q
    ||||||||| |||||||||||||| || ||||||| ||| | |||||||||||||    
T  13439 agtccaagactcttgaactccaaactctttcatttcccacaaaacaaaatgggtt 13385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 251
Target Start/End: Original strand, 16529 - 16595
Alignment:
Q  185 tgagggagcaacaattttgtacatgtctctgtccccaaatcaagtgagatcatcacaaattgttcaa 251  Q
    ||||||||||||| || |||  |||||||  |||||||||| || ||||| ||||||||||||||||    
T  16529 tgagggagcaacatttgtgtgtatgtctccatccccaaatcgagggagatgatcacaaattgttcaa 16595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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