View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10185_low_18 (Length: 300)

Name: NF10185_low_18
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10185_low_18
NF10185_low_18
[»] chr6 (3 HSPs)
chr6 (18-289)||(31610015-31610286)
chr6 (88-167)||(6983817-6983896)
chr6 (30-76)||(3436215-3436261)
[»] chr5 (4 HSPs)
chr5 (38-159)||(5029481-5029603)
chr5 (30-95)||(9042541-9042607)
chr5 (81-164)||(43135775-43135858)
chr5 (126-174)||(35458796-35458844)
[»] chr2 (3 HSPs)
chr2 (30-164)||(35698705-35698840)
chr2 (36-76)||(14802198-14802237)
chr2 (32-77)||(15361291-15361336)
[»] chr3 (2 HSPs)
chr3 (87-172)||(54581497-54581582)
chr3 (33-76)||(26828742-26828785)
[»] chr8 (1 HSPs)
chr8 (35-70)||(24257338-24257373)


Alignment Details
Target: chr6 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 18 - 289
Target Start/End: Complemental strand, 31610286 - 31610015
Alignment:
Q  18 gtatgcttactaagtgagtgtttggattggagtttgcatcatgtttctcactttccaataatttttgatgtgattttttcaaaactgcaaattctagctt 117  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  31610286 gtatgcttactaagtgagtgtttggattggagttcgcatcatgtttctcactttccaataacttttgatgtgattttttcaaaactgcaaattctagctt 31610187  T
Q  118 ttgtatggacgtgggtttggtggctttccaccgctattccaaacacaacataagtgtggatacatattgctaatcaaatgtatgattgggctagattcat 217  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  31610186 ttgtatagacgtggatttggtggctttccaccgctattccaaacacaacataaatgtggatacatagtgctaatcaaatgtatgattgggctagattcat 31610087  T
Q  218 ttgagttagtttgtcacttttatagtatttctaactatgaaaatagggtaatttcttatcgcttctgccttt 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31610086 ttgagttagtttgtcacttttatagtatttctaactatgaaaatagggtaatttcttatcgcttctgccttt 31610015  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 6983896 - 6983817
Alignment:
Q  88 tgattttttcaaaactgcaaattctagcttttgtatggacgtgggtttggtggctttccaccgctattccaaacacaaca 167  Q
    |||||||| |||||||| ||||||||||||| || | |||||| ||||  || || | ||||||||||||||||||||||    
T  6983896 tgatttttacaaaactgaaaattctagctttagtttagacgtgcgtttaatgactgttcaccgctattccaaacacaaca 6983817  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 76
Target Start/End: Complemental strand, 3436261 - 3436215
Alignment:
Q  30 agtgagtgtttggattggagtttgcatcatgtttctcactttccaat 76  Q
    ||||||||||||||||||||||| ||| ||| ||||||||| |||||    
T  3436261 agtgagtgtttggattggagtttccataatgcttctcacttcccaat 3436215  T

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Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 38 - 159
Target Start/End: Complemental strand, 5029603 - 5029481
Alignment:
Q  38 tttggattggagtttgcatcatgtttctcactttccaata-atttttgatgtgattttttcaaaactgcaaattctagcttttgtatggacgtgggtttg 136  Q
    |||||| ||||||||||||||||||||||| ||||||||| | |||||||||||||||| |||| ||   ||||||||||||||| ||||||||||||||    
T  5029603 tttggaatggagtttgcatcatgtttctcaatttccaatacacttttgatgtgatttttacaaagctatgaattctagcttttgtgtggacgtgggtttg 5029504  T
Q  137 gtggctttccaccgctattccaa 159  Q
     ||||||||||||||||||||||    
T  5029503 ctggctttccaccgctattccaa 5029481  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 95
Target Start/End: Complemental strand, 9042607 - 9042541
Alignment:
Q  30 agtgagtgtttggattggagtttgcatcatgtttctcactttccaataat-ttttgatgtgattttt 95  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||  | ||||||||||||||||    
T  9042607 agtgagtgcttggattggagtttgcatcatgtttctcacttcccaatggtcttttgatgtgattttt 9042541  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 81 - 164
Target Start/End: Complemental strand, 43135858 - 43135775
Alignment:
Q  81 tttgatgtgattttttcaaaactgcaaattctagcttttgtatggacgtgggtttggtggctttccaccgctattccaaacaca 164  Q
    ||||| ||||||||  | || ||| ||||||||||||| || | |||||| ||||||||| | |||||||||||||||||||||    
T  43135858 tttgacgtgattttaacgaagctggaaattctagctttagtctagacgtgtgtttggtggttgtccaccgctattccaaacaca 43135775  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Complemental strand, 35458844 - 35458796
Alignment:
Q  126 acgtgggtttggtggctttccaccgctattccaaacacaacataagtgt 174  Q
    ||||| |||| |||||| |||||||| ||| ||||||||||||||||||    
T  35458844 acgtgcgtttagtggctatccaccgcaatttcaaacacaacataagtgt 35458796  T

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Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 30 - 164
Target Start/End: Complemental strand, 35698840 - 35698705
Alignment:
Q  30 agtgagtgtttggattggagtttgcatcatgtttctcactttccaata-atttttgatgtgattttttcaaaactgcaaattctagcttttgtatggacg 128  Q
    ||||||||||||||||||||| ||  |||| ||||||||||||||||  | |||| |||||||||||  |||  |  |||||||||| ||||| ||| ||    
T  35698840 agtgagtgtttggattggagtctgtgtcatatttctcactttccaatgtacttttaatgtgatttttagaaagttagaaattctagcgtttgtgtgggcg 35698741  T
Q  129 tgggtttggtggctttccaccgctattccaaacaca 164  Q
    |||||||||||||||||||||||||||||| |||||    
T  35698740 tgggtttggtggctttccaccgctattccacacaca 35698705  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 36 - 76
Target Start/End: Original strand, 14802198 - 14802237
Alignment:
Q  36 tgtttggattggagtttgcatcatgtttctcactttccaat 76  Q
    |||||||||||| ||||||||||||||||||||||||||||    
T  14802198 tgtttggattgg-gtttgcatcatgtttctcactttccaat 14802237  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 15361291 - 15361336
Alignment:
Q  32 tgagtgtttggattggagtttgcatcatgtttctcactttccaata 77  Q
    ||||||||| |||||||||||||||||| ||| ||||||| |||||    
T  15361291 tgagtgttttgattggagtttgcatcatatttttcacttttcaata 15361336  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 54581582 - 54581497
Alignment:
Q  87 gtgattttttcaaaactgcaaattctagcttttgtatggacgtgggtttggtggctttccaccgctattccaaacacaacataagt 172  Q
    ||||||||| |||| ||| ||||||||||||| || ||||||||  |||||||||| |||||||||||||||||||||||||||||    
T  54581582 gtgatttttacaaagctggaaattctagctttagtctggacgtgtatttggtggctgtccaccgctattccaaacacaacataagt 54581497  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 76
Target Start/End: Original strand, 26828742 - 26828785
Alignment:
Q  33 gagtgtttggattggagtttgcatcatgtttctcactttccaat 76  Q
    ||||||||||||| ||||||||||||||||||||||||||||||    
T  26828742 gagtgtttggattcgagtttgcatcatgtttctcactttccaat 26828785  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 70
Target Start/End: Complemental strand, 24257373 - 24257338
Alignment:
Q  35 gtgtttggattggagtttgcatcatgtttctcactt 70  Q
    ||||||||||||||||||||||||||||||||||||    
T  24257373 gtgtttggattggagtttgcatcatgtttctcactt 24257338  T

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