View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10185_low_24 (Length: 252)
Name: NF10185_low_24
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10185_low_24 |
 | |
|
| [»] scaffold0032 (1 HSPs) |
| | |
|
| [»] scaffold0416 (1 HSPs) |
| | |
|
| [»] scaffold0093 (1 HSPs) |
| | |
|
| [»] scaffold0111 (1 HSPs) |
| | |
|
| [»] scaffold0265 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 10708426 - 10708652
Alignment:
| Q |
19 |
taaagggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaaga |
118 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10708426 |
taaagggtcaccttgtcggacactacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctagctgagtgcaaaatagcaaga |
10708525 |
T |
|
| Q |
119 |
attcagtcggtaaacatagaagaaaaaccaaacttccgaagcaccgcggccaaaaagttccaatccaacgtgttgaatgcttttttaatatcaactttca |
218 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||| || |||||| | ||| |||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
10708526 |
atccagtcggtaaacagagaagaaaaaccaaactttcggagcaccacaaccagaaagttccaatccaacgtattgaaggcttttttaatatcaactttca |
10708625 |
T |
|
| Q |
219 |
aagccacattgccaccaaactgccttt |
245 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
10708626 |
aagccacattgccaccaaactgccttt |
10708652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 10922196 - 10922422
Alignment:
| Q |
19 |
taaagggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaaga |
118 |
Q |
| |
|
|||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
10922196 |
taaagggtcaccttgtcggacactacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctagctgagtgcaaaatagcaaga |
10922295 |
T |
|
| Q |
119 |
attcagtcggtaaacatagaagaaaaaccaaacttccgaagcaccgcggccaaaaagttccaatccaacgtgttgaatgcttttttaatatcaactttca |
218 |
Q |
| |
|
|| ||||||||||||| |||||||||||||||||| || |||||| | ||| |||||||||||||||||| ||||| |||||||||||||||||||||| |
|
|
| T |
10922296 |
atccagtcggtaaacagagaagaaaaaccaaactttcggagcaccacaaccagaaagttccaatccaacgtattgaaggcttttttaatatcaactttca |
10922395 |
T |
|
| Q |
219 |
aagccacattgccaccaaactgccttt |
245 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
10922396 |
aagccacattgccaccaaactgccttt |
10922422 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 41247877 - 41248092
Alignment:
| Q |
19 |
taaagggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaaga |
118 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41247877 |
taaagggtcaccttgtcagacaccacgagaacaagagaaaaaacccactgtcttaccattcaccaaaatagaaagcctggctgagtgcaaaatagcaaga |
41247976 |
T |
|
| Q |
119 |
attcagtcggtaaacatagaagaaaaaccaaacttccgaagcaccgcggccaaaaagttccaatccaacgtgttgaatgcttttttaatatcaactttca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
41247977 |
attcagtcggtaaacatagaagaaaaaccaaacttccgaagcaccgcggcc-aaaagttccaatccaacgtg----------ttttaatatcaactttca |
41248065 |
T |
|
| Q |
219 |
aagccacattgccaccaaactgccttt |
245 |
Q |
| |
|
|||||| |||||||||||||||||||| |
|
|
| T |
41248066 |
aagccaaattgccaccaaactgccttt |
41248092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 44377918 - 44377826
Alignment:
| Q |
19 |
taaagggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaat |
111 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||| |||||||| || || ||||||||||||||||| ||||| || ||||| ||||| |
|
|
| T |
44377918 |
taaagggtctccttgacgaacaccacggacacaagagaagaaacccaccgctttgccattcaccaaaatagagagtcttgccgagtgtaaaat |
44377826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 111
Target Start/End: Complemental strand, 44393498 - 44393406
Alignment:
| Q |
19 |
taaagggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaat |
111 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||| |||||||| || || ||||||||||||||||| ||||| || ||||| ||||| |
|
|
| T |
44393498 |
taaagggtctccttgacgaacaccacggacacaagagaagaaacccaccgctttgccattcaccaaaatagagagtcttgccgagtgtaaaat |
44393406 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 32299771 - 32299716
Alignment:
| Q |
35 |
cgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaataga |
90 |
Q |
| |
|
||||| |||||||| |||| ||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
32299771 |
cgaaccccacgagagcaagcgaaaaaaccaaccgccttaccattaaccaaaataga |
32299716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 90
Target Start/End: Original strand, 33236443 - 33236492
Alignment:
| Q |
41 |
ccacgagaacaagagaaaaaacccactgccttaccattcaccaaaataga |
90 |
Q |
| |
|
||||| |||||||||||||| || |||||||| ||||| ||||||||||| |
|
|
| T |
33236443 |
ccacgggaacaagagaaaaagccaactgccttgccattaaccaaaataga |
33236492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0032 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0032
Description:
Target: scaffold0032; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 41 - 245
Target Start/End: Complemental strand, 125776 - 125572
Alignment:
| Q |
41 |
ccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaagaattcagtcggtaaacatagaag |
140 |
Q |
| |
|
|||| |||||||| ||||| ||||| ||||||| |||||||||||||||||| || |||||||||||||||||||| || |||| ||||||| ||| |
|
|
| T |
125776 |
ccacaagaacaagtaaaaaatcccaccgccttacgattcaccaaaatagaaagcctagctgagtgcaaaatagcaaggatccagttcgtaaacaccaaag |
125677 |
T |
|
| Q |
141 |
aaaaaccaaacttccgaagcaccgcggccaaaaagttccaatccaacgtgttgaatgcttttttaatatcaactttcaaagccacattgccaccaaactg |
240 |
Q |
| |
|
||||||| || || |||| ||| ||||||| |||||||| ||||||| ||| | |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
125676 |
aaaaaccgaatttttttagcatcgcaaccaaaaaattccaatctaacgtgtcaaatacctttttaatatcaaccttcaaagccacattgccaccaaactg |
125577 |
T |
|
| Q |
241 |
ccttt |
245 |
Q |
| |
|
||||| |
|
|
| T |
125576 |
ccttt |
125572 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0416 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0416
Description:
Target: scaffold0416; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 152
Target Start/End: Complemental strand, 12525 - 12392
Alignment:
| Q |
19 |
taaagggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaaga |
118 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||||||| || |||| ||||| |||||||||||||||||||||||||| ||||| ||||| || | | |
|
|
| T |
12525 |
taaagggtccccttgacgaacaccacggacacaagagaagaaccccagcgccttgccattcaccaaaatagaaagtctggccgagtgtaaaattgccaaa |
12426 |
T |
|
| Q |
119 |
attcagtcggtaaacatagaagaaaaaccaaact |
152 |
Q |
| |
|
|| || | || || | ||||||||||||||||| |
|
|
| T |
12425 |
atccaattggagaaaacagaagaaaaaccaaact |
12392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 12161224 - 12161157
Alignment:
| Q |
23 |
gggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaataga |
90 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
12161224 |
gggtctccttgtcgaacaccacaagaacaagagaaaaaacccaccgcttttgcattcaccaaaataga |
12161157 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 90
Target Start/End: Complemental strand, 15157235 - 15157168
Alignment:
| Q |
23 |
gggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaataga |
90 |
Q |
| |
|
||||| |||||||||||||||| ||||||||||||||||||||| || || |||||||||||||||| |
|
|
| T |
15157235 |
gggtctccttgtcgaacaccacaagaacaagagaaaaaacccaccgcttttgcattcaccaaaataga |
15157168 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 66
Target Start/End: Original strand, 15144242 - 15144285
Alignment:
| Q |
23 |
gggtcaccttgtcgaacaccacgagaacaagagaaaaaacccac |
66 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||| ||||| |
|
|
| T |
15144242 |
gggtccccttgtcgaacaccacgagagcaagagaaaaatcccac |
15144285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0093 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0093
Description:
Target: scaffold0093; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 90
Target Start/End: Complemental strand, 13710 - 13658
Alignment:
| Q |
38 |
acaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaataga |
90 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||| |||||||| |||||||| |
|
|
| T |
13710 |
acaccacgagagcaagagaaaaaacccactgcctttccattcactaaaataga |
13658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0111 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0111
Description:
Target: scaffold0111; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 43649 - 43867
Alignment:
| Q |
22 |
agggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaagaatt |
121 |
Q |
| |
|
|||||| || ||||| || |||||||||||| ||| || ||||||||||||||||||||||| ||||| || | ||||| | || ||||||||||| |
|
|
| T |
43649 |
agggtccccctgtcggactccacgagaacaattgaagaatcccactgccttaccattcaccaagatagagagccgagctgaatataagatagcaagaatc |
43748 |
T |
|
| Q |
122 |
cagtcggtaaacatagaagaaaaaccaaacttccgaagcaccgcggccaaaaagttccaatccaacgtgttgaatgcttttttaatatcaactttcaaag |
221 |
Q |
| |
|
||||| ||||||| | || |||||||| || | |||||||| ||| || || ||||||||||| || || ||||||||||| |||| ||| | |
|
|
| T |
43749 |
cagtcagtaaacaaatgtgagaaaccaaattttctgagcaccgctatcaagaaatttcaatccaacgtaacaaaggcctttttaatatcgacttacaatg |
43848 |
T |
|
| Q |
222 |
ccacattgccaccaaactg |
240 |
Q |
| |
|
|||||||||| ||||||| |
|
|
| T |
43849 |
ccacattgccgtcaaactg |
43867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 23 - 111
Target Start/End: Complemental strand, 19178181 - 19178093
Alignment:
| Q |
23 |
gggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaat |
111 |
Q |
| |
|
||||| ||||| || ||||| || || ||||| || |||||||| |||||||||||||||||||||||||| | |||||| ||||||| |
|
|
| T |
19178181 |
gggtctccttgacggacaccgcgggagcaagaaaagaaacccaccgccttaccattcaccaaaatagaaagacgggctgaaagcaaaat |
19178093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 21490212 - 21490432
Alignment:
| Q |
19 |
taaagggtcaccttgtcgaacaccacgagaacaagagaaaaaacccactgccttaccattcaccaaaatagaaagtctggctgagtgcaaaatagcaaga |
118 |
Q |
| |
|
||||||||| || | ||| || || ||||||||| ||| || ||||||||||||||||||||||| || || || | ||||| || || |||||||| |
|
|
| T |
21490212 |
taaagggtccccctatcggactccccgagaacaattgaagaatcccactgccttaccattcaccaagatggagagccgagctgaatgtaagatagcaagt |
21490311 |
T |
|
| Q |
119 |
attcagtcggtaaacatagaagaaaaaccaaacttccgaagcaccgcggccaaaaagttccaatccaacgtgttgaatgcttttttaatatcaactttca |
218 |
Q |
| |
|
|| ||||| ||||||| | || |||||||| || | |||||||| ||| || ||||||||||| || | || || ||||||||||| ||||| | |
|
|
| T |
21490312 |
atccagtcagtaaacaaatgtgagaaaccaaattttctgagcaccgctatcaagaaattccaatccaatgtatcaaaggcctttttaatatcgactttta |
21490411 |
T |
|
| Q |
219 |
aagccacattgccaccaaact |
239 |
Q |
| |
|
| ||||||||||| ||||||| |
|
|
| T |
21490412 |
atgccacattgccgccaaact |
21490432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 90
Target Start/End: Complemental strand, 21810845 - 21810796
Alignment:
| Q |
41 |
ccacgagaacaagagaaaaaacccactgccttaccattcaccaaaataga |
90 |
Q |
| |
|
||||| || ||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
21810845 |
ccacgggagcaagaaaaaaaaccaactgcctttccattcaccaaaataga |
21810796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0265 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0265
Description:
Target: scaffold0265; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 50 - 90
Target Start/End: Original strand, 21973 - 22013
Alignment:
| Q |
50 |
caagagaaaaaacccactgccttaccattcaccaaaataga |
90 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||||||||| |
|
|
| T |
21973 |
caagaaaaaaaaccaactgcctttccattcaccaaaataga |
22013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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