View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10185_low_29 (Length: 241)
Name: NF10185_low_29
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10185_low_29 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 3495580 - 3495779
Alignment:
| Q |
19 |
gatggagggattaagagttaggttgggcactccaccagatgtgcttccgttggctacagtgacagcttgatttgccaatgtacgaaaaatcttagcataa |
118 |
Q |
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| T |
3495580 |
gatggagggattaagagttaggttgggcactccaccagatgtgcttccgctggctacagtgacagcttgatttgccaatgtacgaaaaatcttagcataa |
3495679 |
T |
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| Q |
119 |
tgccgcaaccgagtgattaaatgtgatgccagatcaataactgaatcaacataggcctacataatatattgaaacagttatgagatgtatatacagttaa |
218 |
Q |
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| T |
3495680 |
tgccgcaaccgagtgatcaaatgtgatgccagatcaataactgaatcaacataggcctacataatatattgaaacagttatgagatgtatatacagttaa |
3495779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 185
Target Start/End: Original strand, 3509789 - 3509899
Alignment:
| Q |
75 |
cagtgacagcttgatttgccaatgtacgaaaaatcttagcataatgccgcaaccgagtgattaaatgtgatgccagatcaataactgaatcaacataggc |
174 |
Q |
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||||| |||||||| |||||| ||||||| ||| ||||||||| ||||||||| |||| ||| | | || ||||||| |||||||||||||||||| |
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| T |
3509789 |
cagtggcagcttgacttgccagtgtacgacaaaatttagcataacaccgcaaccgtgtgaaaaaagataaagctagatcaagaactgaatcaacataggc |
3509888 |
T |
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| Q |
175 |
ctacataatat |
185 |
Q |
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| T |
3509889 |
ctacgtaatat |
3509899 |
T |
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