View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10185_low_3 (Length: 479)

Name: NF10185_low_3
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10185_low_3
NF10185_low_3
[»] chr1 (1 HSPs)
chr1 (17-472)||(52971971-52972423)


Alignment Details
Target: chr1 (Bit Score: 426; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 17 - 472
Target Start/End: Complemental strand, 52972423 - 52971971
Alignment:
Q  17 aggccatctgggttaaggcactgcaacaccttagtccaagtctctctctgataactcttatggtggaacttcaaacttgtttgcctcctcctgcaccagt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  52972423 aggccatctgggttaaggcactgcaacaccttagtccaagtctctctctgataactcttatggtggaacttcaaacttgtttgcctcctcctacaccagt 52972324  T
Q  117 tatcacccatggactcatgaagatcaacacaccctttaatcttttgcactatgtatctcccattgttcattagaaaaacacatcgtaaagccatatccct 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52972323 tatcacccatggactcatgaagatcaacacaccctttaatcttttgcactatgtatctcccattgttcattagaaaaacacatcgtaaagccatatccct 52972224  T
Q  217 atataacttggacttcctttcggtattttcatctaaaaggtccataattgtcatcaattgaactacaaaaggtgatttgttaggctccccatctaaattt 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  52972223 atataacttggacttcctttcggtattttcatctaaaaggtccataattgtcatcaattgaactacaaaaggtgatttgttaggctctccatctaaattt 52972124  T
Q  317 tgatcccttgttttatcattgttttcttcgttttgaatatctgcagtggatgtggatgtacccttattattattattactatcatcaacataatggtgtc 416  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  52972123 tgatcccttgttttatcgttgttttcttcgttttgaatatctgcggtggatgtggatgtacccttattatt---attactatcatcaacataatggtgtc 52972027  T
Q  417 ctatagtagcaagataatcatctgaacaatattggtaaaacacttgctccaacgtc 472  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52972026 ctatagtagcaagataatcatctgaacaatattggtaaaacacttgctccaacgtc 52971971  T

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