View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10185_low_32 (Length: 239)

Name: NF10185_low_32
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10185_low_32
NF10185_low_32
[»] chr1 (1 HSPs)
chr1 (1-224)||(45424874-45425096)


Alignment Details
Target: chr1 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 45425096 - 45424874
Alignment:
Q  1 attattatatgaacttaatacaagaagaatgatagtagcaatttactcactaattgcatgggctaatgattgctttatttattggaccagtcactacctt 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45425096 attattatatgaacttattacaagaagaatgatagtagcaatttactcactaattgcatgggctaatgattgctttatttattggaccagtcactacctt 45424997  T
Q  101 aaaacaactagtatgcatagttacatatacatattaaaatgttagttgataannnnnnnnnnnnnnnnnatagattatataagaacaaatacattttcta 200  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||||||||||||||||||||||||||    
T  45424996 -aaacaactagtatgcatagttacatatacatattaaaatgttagttgataatttttttcttttcttttatagattatataagaacaaatacattttcta 45424898  T
Q  201 aattatactcagatcgtatatagt 224  Q
    |||||||||||||| |||||||||    
T  45424897 aattatactcagattgtatatagt 45424874  T

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