View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10185_low_35 (Length: 227)
Name: NF10185_low_35
Description: NF10185
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10185_low_35 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 35863456 - 35863682
Alignment:
| Q |
1 |
aatggtcatttaactggattctgtaagtggcaaatttaaactgttgtatcaccttcctccttccaagtctgaatgtgaggaatggccatgttcagatgct |
100 |
Q |
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| T |
35863456 |
aatggtcatttaactggattctgtaagtggcaaatttaaactgttgtatcaccttcctccttccaagtctgaatgtgaggaatggccatgttcagatgct |
35863555 |
T |
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| Q |
101 |
gtcctcacggaatatgaattgtcccctcctcctggaaatatttttggctggacgactgcatccaaatttgttaattattataggtatacccttcgacaaa |
200 |
Q |
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| T |
35863556 |
gtcctcacggaatatgaattgtcccctcctcctggaaatatttctggctggacgactgcatccaaatttgttagttattataggtatacccttcgacaaa |
35863655 |
T |
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| Q |
201 |
taatttagaaatatgattgatcaaata |
227 |
Q |
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| T |
35863656 |
taatttagaaatatgattgatcaaata |
35863682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 2 - 221
Target Start/End: Original strand, 34813022 - 34813241
Alignment:
| Q |
2 |
atggtcatttaactggattctgtaagtggcaaatttaaactgttgtatcaccttcctccttccaagtctgaatgtgaggaatggccatgttcagatgctg |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||| |||||||| |||||||||||||||||||||| | ||||| |||||||||| |
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| T |
34813022 |
atggtcatttaactggattctgtaagtggcaaatttaaattattgtattaccttcctgtttccaagtctgaatgtgaggaaggaccatgatcagatgctg |
34813121 |
T |
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| Q |
102 |
tcctcacggaatatgaattgtcccctcctcctggaaatatttttggctggacgactgcatccaaatttgttaattattataggtatacccttcgacaaat |
201 |
Q |
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| T |
34813122 |
tacccacggaatatgtgttgtctcctcctcttggaaatacgtctgaaggaacgaatgcatcacaatttgttagttattattggtatactctataacaact |
34813221 |
T |
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| Q |
202 |
aatttagaaatatgattgat |
221 |
Q |
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| T |
34813222 |
aatttagaaatatgaatgat |
34813241 |
T |
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