View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10186_high_1 (Length: 730)
Name: NF10186_high_1
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10186_high_1 |
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| [»] scaffold0236 (1 HSPs) |
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| [»] scaffold1432 (1 HSPs) |
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Alignment Details
Target: scaffold0236 (Bit Score: 520; Significance: 0; HSPs: 1)
Name: scaffold0236
Description:
Target: scaffold0236; HSP #1
Raw Score: 520; E-Value: 0
Query Start/End: Original strand, 17 - 707
Target Start/End: Original strand, 21320 - 22025
Alignment:
| Q |
17 |
cagaaatggtgcctggtcttgggcgattcctcgcccaatattgatgcataatttcatggtgtagtgttatctagtggcagggtgtatcatctttgt---- |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21320 |
cagaaatggtgcctggtcttgggcgattcctcgcccaatattgatgcataatttcatggtgtagtgttatctagtggcagggtgtatcatctttgtaatc |
21419 |
T |
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| Q |
113 |
-----------------ttcatgaattaattaatataataaagttcgtattttgagttaaaatattggtgctcttattcactgtgttgcattgaagttta |
195 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
21420 |
ttttttgttcaccttgtttcatgaattaattgatataataaagttcgtattttgagttaaa-tattggtgctcttattcgctgtgttgcattgaagttta |
21518 |
T |
|
| Q |
196 |
tttatttgatctgctatatatgctatgttcaatggagacttaattggcttataaatcatagcatatgcaaatcaattttaatcgatctcttctggcaatt |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21519 |
tttatttgatctgctatatatgctatgttcaatggagacttaattggcttataaatcatagcatatgcaaatcaattttaatcgatctcttctggcaatt |
21618 |
T |
|
| Q |
296 |
atggtgattaattgataacaaaattagtcttataattatagatgccaaatcgctaatcatcactcaagaccatgtttttcttaccccatcaatatccgat |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||| |
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| T |
21619 |
atggtgattaattgataacaaaattagtcttataattatagataccaaatcgctaatcatcactcaagatcatgtttttcttaacccatcattatccgat |
21718 |
T |
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| Q |
396 |
tccagatctaatgtcattgttggtgattttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtatttgaaagt |
495 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21719 |
tcaagatctaatgtcattgttggtgattttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtatttgaaagt |
21818 |
T |
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| Q |
496 |
gacttggtttagtagtacagtattttgagtaattggattatagcggctttagctaaattcagcatcctcttggccttacaagtaaaatttctaacaataa |
595 |
Q |
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|| |||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
21819 |
gatttggtttact-----agtattttgagtaattggattatagcggctttagctaaattcaccatcctcttggccttacaagtaaaatttcaaacaataa |
21913 |
T |
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| Q |
596 |
aaataaccgaaccctatcctttctcaatctctgctcttccattctcttcgaaatctagtgtacgttggcggcgtttcaagttgccattccatgtatacga |
695 |
Q |
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||||||| |||||||| ||||||||||||||| ||||||||| ||| ||| |||||||||||||| | | | ||||||||||||||||||||| |||| |
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| T |
21914 |
aaataactgaaccctagtctttctcaatctctgatcttccattttctacgacatctagtgtacgttagtgccttttcaagttgccattccatgtgcacga |
22013 |
T |
|
| Q |
696 |
cacttctctatg |
707 |
Q |
| |
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|||||||||||| |
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| T |
22014 |
cacttctctatg |
22025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1432 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: scaffold1432
Description:
Target: scaffold1432; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 410 - 721
Target Start/End: Complemental strand, 1645 - 1334
Alignment:
| Q |
410 |
cattgttggtgattttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtatttgaaagtgacttggtttagta |
509 |
Q |
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|||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1645 |
catttttggtgaatttatgatttccttgttattttgctttgctttattttagtagtttgtatcgggtgtgtttggtatttgaaagtgacttggtttagta |
1546 |
T |
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| Q |
510 |
gtacagtattttgagtaattggattatagcggctttagctaaattcagcatcctcttggccttacaagtaaaatttctaacaataaaaataaccgaaccc |
609 |
Q |
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| T |
1545 |
gtacagtattttgagtaattggattatagcggctttagctaaattcagcatcctcttggccttacaagtaaaatttcaaacaataaaaataaccgaaccc |
1446 |
T |
|
| Q |
610 |
tatcctttctcaatctctgctcttccattctcttcgaaatctagtgtacgttggcggcgtttcaagttgccattccatgtatacgacacttctctatgca |
709 |
Q |
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| T |
1445 |
tatcctctctcaatctctgctcttccattctctttgacatctagtgtacgttggcgccttttcaagttgccattccatgtatacgacacttctctatgcg |
1346 |
T |
|
| Q |
710 |
cgatttcatctc |
721 |
Q |
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|||||||||||| |
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| T |
1345 |
cgatttcatctc |
1334 |
T |
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