View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10186_high_15 (Length: 250)

Name: NF10186_high_15
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10186_high_15
NF10186_high_15
[»] chr7 (17 HSPs)
chr7 (10-150)||(35109691-35109831)
chr7 (10-150)||(38265229-38265369)
chr7 (10-150)||(41151172-41151313)
chr7 (11-150)||(21577091-21577230)
chr7 (21-150)||(16059356-16059485)
chr7 (17-150)||(34721834-34721967)
chr7 (10-150)||(12472121-12472261)
chr7 (17-132)||(37095209-37095324)
chr7 (11-150)||(38405147-38405286)
chr7 (11-137)||(245257-245383)
chr7 (10-150)||(45278452-45278592)
chr7 (21-150)||(18116947-18117076)
chr7 (23-148)||(11216771-11216896)
chr7 (21-150)||(48176399-48176529)
chr7 (17-149)||(23028684-23028816)
chr7 (17-118)||(28407540-28407637)
chr7 (17-60)||(39234853-39234896)
[»] chr2 (25 HSPs)
chr2 (11-150)||(45136963-45137102)
chr2 (11-148)||(17136389-17136526)
chr2 (11-150)||(40156040-40156179)
chr2 (11-150)||(25987654-25987794)
chr2 (10-149)||(21637898-21638037)
chr2 (11-149)||(10745225-10745363)
chr2 (11-150)||(2754044-2754183)
chr2 (28-150)||(6672803-6672925)
chr2 (17-150)||(36836328-36836461)
chr2 (10-150)||(5039420-5039560)
chr2 (11-149)||(36380125-36380263)
chr2 (17-150)||(44650393-44650526)
chr2 (11-149)||(26690155-26690293)
chr2 (11-128)||(558432-558549)
chr2 (12-147)||(3200884-3201019)
chr2 (11-150)||(2357069-2357207)
chr2 (11-150)||(7860139-7860278)
chr2 (20-149)||(30372682-30372811)
chr2 (17-148)||(33066592-33066723)
chr2 (18-149)||(13047156-13047282)
chr2 (32-117)||(21487181-21487266)
chr2 (21-125)||(4553561-4553666)
chr2 (17-67)||(2098825-2098875)
chr2 (80-135)||(20961496-20961551)
chr2 (72-112)||(30477240-30477280)
[»] chr3 (26 HSPs)
chr3 (17-150)||(8400855-8400988)
chr3 (17-150)||(7417798-7417931)
chr3 (11-150)||(50823698-50823837)
chr3 (11-150)||(50852023-50852162)
chr3 (17-150)||(35198765-35198898)
chr3 (17-149)||(22855888-22856020)
chr3 (10-150)||(43334046-43334186)
chr3 (17-139)||(52545332-52545454)
chr3 (21-150)||(34824556-34824685)
chr3 (21-149)||(55468000-55468129)
chr3 (10-135)||(29635883-29636009)
chr3 (18-121)||(22371729-22371832)
chr3 (17-103)||(37330606-37330692)
chr3 (11-128)||(19872476-19872593)
chr3 (18-103)||(30534902-30534987)
chr3 (54-149)||(48077977-48078072)
chr3 (17-103)||(37454743-37454829)
chr3 (10-90)||(25910658-25910738)
chr3 (10-150)||(50725989-50726129)
chr3 (10-150)||(50786719-50786859)
chr3 (10-136)||(42876229-42876355)
chr3 (16-111)||(30203652-30203744)
chr3 (17-118)||(25589253-25589347)
chr3 (10-61)||(773666-773717)
chr3 (10-93)||(39438821-39438903)
chr3 (23-68)||(31297529-31297574)
[»] chr8 (21 HSPs)
chr8 (10-150)||(19723311-19723451)
chr8 (10-149)||(11404002-11404141)
chr8 (11-150)||(4840140-4840279)
chr8 (10-148)||(29767190-29767326)
chr8 (17-148)||(32296638-32296769)
chr8 (21-132)||(17095568-17095679)
chr8 (11-150)||(22711509-22711648)
chr8 (11-147)||(28739554-28739690)
chr8 (11-117)||(36261679-36261785)
chr8 (10-149)||(41553286-41553425)
chr8 (38-121)||(21355004-21355087)
chr8 (12-150)||(11610280-11610418)
chr8 (10-104)||(11909415-11909509)
chr8 (17-147)||(30682842-30682971)
chr8 (16-117)||(43288105-43288206)
chr8 (51-135)||(24475029-24475113)
chr8 (74-148)||(27881044-27881118)
chr8 (74-148)||(28021225-28021299)
chr8 (11-78)||(27879553-27879620)
chr8 (11-78)||(28019734-28019801)
chr8 (11-138)||(44741914-44742038)
[»] chr5 (10 HSPs)
chr5 (10-150)||(17064323-17064463)
chr5 (16-147)||(20983001-20983132)
chr5 (17-150)||(37976546-37976683)
chr5 (17-109)||(41910865-41910957)
chr5 (23-117)||(31673863-31673956)
chr5 (17-133)||(5009416-5009531)
chr5 (11-61)||(35237052-35237102)
chr5 (22-140)||(39162859-39162977)
chr5 (98-149)||(35237103-35237154)
chr5 (60-117)||(18303352-18303409)
[»] chr1 (17 HSPs)
chr1 (21-150)||(30054445-30054574)
chr1 (11-150)||(20014458-20014597)
chr1 (10-149)||(30370052-30370191)
chr1 (10-150)||(45324006-45324146)
chr1 (10-149)||(12025182-12025321)
chr1 (21-149)||(21090116-21090244)
chr1 (11-132)||(22024121-22024242)
chr1 (12-150)||(4573379-4573517)
chr1 (19-150)||(30850841-30850972)
chr1 (11-121)||(14498072-14498182)
chr1 (10-137)||(33763246-33763373)
chr1 (10-124)||(33762532-33762646)
chr1 (28-106)||(35371755-35371833)
chr1 (30-138)||(44438562-44438670)
chr1 (10-91)||(35618034-35618115)
chr1 (10-78)||(17015192-17015260)
chr1 (104-150)||(15034455-15034501)
[»] chr4 (26 HSPs)
chr4 (10-150)||(46494390-46494530)
chr4 (11-150)||(51066493-51066632)
chr4 (18-149)||(36192542-36192673)
chr4 (11-150)||(51713958-51714097)
chr4 (11-150)||(32139164-32139303)
chr4 (17-150)||(7173584-7173717)
chr4 (17-150)||(30970383-30970516)
chr4 (11-150)||(50905748-50905887)
chr4 (17-150)||(39863777-39863910)
chr4 (48-150)||(8740448-8740550)
chr4 (11-121)||(29576444-29576554)
chr4 (10-122)||(55231715-55231827)
chr4 (10-135)||(2570216-2570341)
chr4 (11-150)||(47626986-47627127)
chr4 (11-112)||(676766-676867)
chr4 (17-94)||(22304090-22304167)
chr4 (11-124)||(41523423-41523536)
chr4 (21-149)||(2294719-2294841)
chr4 (10-117)||(4080544-4080651)
chr4 (10-139)||(50399634-50399763)
chr4 (20-139)||(51279035-51279154)
chr4 (47-148)||(22423378-22423479)
chr4 (12-83)||(23084459-23084530)
chr4 (29-86)||(37990606-37990663)
chr4 (16-115)||(40012548-40012646)
chr4 (21-64)||(51066240-51066283)
[»] chr6 (9 HSPs)
chr6 (11-150)||(35163743-35163882)
chr6 (10-129)||(20685346-20685465)
chr6 (11-148)||(19686820-19686957)
chr6 (11-150)||(2711733-2711866)
chr6 (16-128)||(17948702-17948814)
chr6 (12-150)||(14505519-14505655)
chr6 (28-123)||(15070152-15070247)
chr6 (96-150)||(14496352-14496406)
chr6 (47-125)||(24336640-24336718)
[»] scaffold0021 (1 HSPs)
scaffold0021 (17-149)||(107691-107822)
[»] scaffold0691 (1 HSPs)
scaffold0691 (43-148)||(6994-7099)


Alignment Details
Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 35109831 - 35109691
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35109831 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 35109732  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  35109731 ctccaaaggcactagtggggctcgaacccgggttctctcgg 35109691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 38265229 - 38265369
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38265229 ggttacataaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 38265328  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  38265329 ctccaaaggcactagcggggctcgaacccaggttctctcgg 38265369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 41151313 - 41151172
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttac-aaaggtaattacatttacctc 108  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41151313 ggttacaaaaaatttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaaggtaattacatttacctc 41151214  T
Q  109 cctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  41151213 cctccaaagacactagcggggctcgaacccgggttctctcgg 41151172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 21577091 - 21577230
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||    
T  21577091 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtatttacatttacctccc 21577190  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||||| ||| |||||||||||||||||||||||||    
T  21577191 tccaaaggcattagtggggctcgaacccgggttctctcgg 21577230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 16059356 - 16059485
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  16059356 ttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcagagagcacttacaaaggtaattacatttacctccctgcaaaggca 16059455  T
Q  121 ctagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||||||||||||||||||    
T  16059456 ctagcggggctcgaacccgggttctctcgg 16059485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 34721967 - 34721834
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34721967 aaaattttagggtgaggggatggtgcccgagtccaaggcagggaagtccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 34721868  T
Q  117 ggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||| ||| ||||||||||||||    
T  34721867 ggcactagcggggcttgaatccgggttctctcgg 34721834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 12472261 - 12472121
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||| ||| ||||| ||||||||||||| |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||||||||||    
T  12472261 ggttacacaaagtttagggtgaggggatggtaccccagtccaagacagggaagaccttcgtgctcaaagagcacttacaaaggtaattatatttacctcc 12472162  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  12472161 ctccaaaggcactagtggggctcgaacccgggttctctcgg 12472121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 17 - 132
Target Start/End: Original strand, 37095209 - 37095324
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37095209 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 37095308  T
Q  117 ggcactagcggggctc 132  Q
    | ||||||||||||||    
T  37095309 gacactagcggggctc 37095324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 38405147 - 38405286
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  38405147 gttacaaaatttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaagataattacatttacctccc 38405246  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||||||||||| ||||||||| ||  |||||||||    
T  38405247 tccaaaggcactagcgaggctcgaactcgaattctctcgg 38405286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 137
Target Start/End: Original strand, 245257 - 245383
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||| ||||||||||||||||||    
T  245257 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgtttacaaagataattacatttacctccc 245356  T
Q  111 tccaaaggcactagcggggctcgaacc 137  Q
    ||||| |||||||||||||||||||||    
T  245357 tccaagggcactagcggggctcgaacc 245383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 45278592 - 45278452
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||||| |||    
T  45278592 ggttacaaaaattttagggtgaggggatggtgctccagtccaaggcagggaagacattcgggtttaaagagcacttacaaagataattacatttacttcc 45278493  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    || ||||||||||||||||||||||||||||||| ||||||    
T  45278492 cttcaaaggcactagcggggctcgaacccgggttatctcgg 45278452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 18116947 - 18117076
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||  |||||||||||| |||||||||||||||||||||||||||| |||||||    
T  18116947 ttttagggtgaggggatggtgccccagtccaaggcagggaagatcttcgacctcaaagagcacctacaaaggtaattacatttacctccctctaaaggca 18117046  T
Q  121 ctagcggggctcgaacccgggttctctcgg 150  Q
    |||||| |||||||||||||||||||||||    
T  18117047 ctagcgtggctcgaacccgggttctctcgg 18117076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 23 - 148
Target Start/End: Complemental strand, 11216896 - 11216771
Alignment:
Q  23 ttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcact 122  Q
    |||| ||||||| ||| ||||| ||||||| | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  11216896 ttagggtgagggaatgatgccctagtccaaagtagagaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcact 11216797  T
Q  123 agcggggctcgaacccgggttctctc 148  Q
    |  |||||||||||||||||||||||    
T  11216796 aatggggctcgaacccgggttctctc 11216771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 48176529 - 48176399
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggc-agggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 119  Q
    |||||| |||||||||||||||||||||||||||  |||||| |||||| |||||||| | |||||||||| ||| |||||||||||||| |||||||||    
T  48176529 ttttagggtgaggggatggtgccccagtccaaggggagggaaaaccttccggctcaaaaaacacttacaaaagtatttacatttacctccttccaaaggc 48176430  T
Q  120 actagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||||||||| |||||||||    
T  48176429 actagcggggctcgaacccggattctctcgg 48176399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 23028816 - 23028684
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    ||||||||||  |||| |||||||| | ||||| |||| ||||||| |||||||| ||||| | |||||| |||||||||||||||||| |||||| |||    
T  23028816 aaaattttaggatgagaggatggtgtctcagtctaaggtagggaaggccttcgggttcaaaaaacacttataaaggtaattacatttacatccctctaaa 23028717  T
Q  117 ggcactagcggggctcgaacccgggttctctcg 149  Q
    |||| ||| || | |||||||||| ||||||||    
T  23028716 ggcattagaggagttcgaacccggattctctcg 23028684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 28407637 - 28407540
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||||||| ||||||||  |    |||||||||||||||||||||||||||| ||| ||||||||||||||||| |||    
T  28407637 aaaattttagggtgaggggatggtgccccaatccaaggcttg----accttcgggctcaaagagcacttacaaaagtatttacatttacctccctctaaa 28407542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 39234896 - 39234853
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcaggga 60  Q
    |||||||| | |||||||||||||||||||||||| ||||||||    
T  39234896 aaaatttttgggtgaggggatggtgccccagtccatggcaggga 39234853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 132; Significance: 1e-68; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 45136963 - 45137102
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45136963 gttacaaaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 45137062  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  45137063 tccaaaggcactagcggggctcgaacccgggttctctcgg 45137102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 148
Target Start/End: Complemental strand, 17136526 - 17136389
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  17136526 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcggggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 17136427  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctc 148  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  17136426 tccaaaggcactaacggggctcgaacccgggttctctc 17136389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 40156179 - 40156040
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40156179 gttacaaaaattttatggtgaggggatggtgccccagttcaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 40156080  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  40156079 tccaaaggcactagcggggctcgaacccggattctctcgg 40156040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 25987654 - 25987794
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaa-gaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||    
T  25987654 gttacaaaaattttagggtgaggggatggtgccccagaccaaggcagggaaagaccttcggactcaaagagcacttacaaaggtaattacatttacctcc 25987753  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||||||||||||||||||||||||| ||||||||||    
T  25987754 ctccaaaggcactagcggggctcgaacccgagttctctcgg 25987794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 21638037 - 21637898
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  21638037 ggttacaaaaattttagggtgaggggatggtgccctagtccaaggcagagaagacctttgggctcaaagagcacttacaaaggtatttacatttacctcc 21637938  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcg 149  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  21637937 ctccaaaggcactagcggggctcaaacccgggttctctcg 21637898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 10745225 - 10745363
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  10745225 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaataccttcgggttcaaagagcacttacaaagataattacatttacctccc 10745324  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcg 149  Q
    || |||||||||||||||||||| |||||||||||||||    
T  10745325 tctaaaggcactagcggggctcggacccgggttctctcg 10745363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 2754044 - 2754183
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  2754044 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccc 2754143  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||||| ||| ||| |||||| ||||||||||||||    
T  2754144 tccaaaggcattagtgggactcgaatccgggttctctcgg 2754183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 28 - 150
Target Start/End: Original strand, 6672803 - 6672925
Alignment:
Q  28 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcgg 127  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  6672803 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcgcgtacaaaggtaattacatttacctccctccaaaggcactagcgg 6672902  T
Q  128 ggctcgaacccgggttctctcgg 150  Q
    |||| ||||||||||||||||||    
T  6672903 ggcttgaacccgggttctctcgg 6672925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 36836328 - 36836461
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||  |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36836328 aaaattttaaggtgaggggatggtgccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 36836427  T
Q  117 ggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||| |||||| ||||||| |||||||||||||    
T  36836428 ggcaccagcgggactcgaactcgggttctctcgg 36836461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 5039560 - 5039420
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  5039560 ggttacaaaaattttagagtgaggggatggtgccctagtccaaggtagggaagatcttcgggctcaaagagcacttacaaaggtaattacgtttacctcc 5039461  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||| ||| |||||||||| ||||||||||| ||||||||||    
T  5039460 ctctaaaagcactagcggagctcgaacccgagttctctcgg 5039420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 11 - 149
Target Start/End: Original strand, 36380125 - 36380263
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  36380125 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaagggaattacatttacctccc 36380224  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcg 149  Q
    ||||||||||||||||||| || |||||| ||| |||||    
T  36380225 tccaaaggcactagcggggttcaaacccgagttttctcg 36380263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 44650526 - 44650393
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44650526 aaaattttagggtgaggggatggtgccccggtccaaggcagggaagatcttcggactcaaagagcacttacaaaggtaattacatttacctccctccaaa 44650427  T
Q  117 ggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||| ||| |||||||  |||||||||||||    
T  44650426 ggcactaacggagctcgaaatcgggttctctcgg 44650393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 11 - 149
Target Start/End: Complemental strand, 26690293 - 26690155
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||  | |||||| ||||||||||||||||||||||||||||||    
T  26690293 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcgaacacaaagatcacttacaaaggtaattacatttacctccc 26690194  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcg 149  Q
    |||||| ||||||||||| ||||||||| | ||||||||    
T  26690193 tccaaaagcactagcgggactcgaacccagattctctcg 26690155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 558432 - 558549
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||||  |||||||||||||||||||| |||||||||||||||||||    
T  558432 gttacaaaaattttagggtgaggggatggtgccccattccaaggaagggaagaccttctagctcaaagagcacttacaaaagtaattacatttacctccc 558531  T
Q  111 tccaaaggcactagcggg 128  Q
    ||||||||||||||||||    
T  558532 tccaaaggcactagcggg 558549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 12 - 147
Target Start/End: Complemental strand, 3201019 - 3200884
Alignment:
Q  12 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 111  Q
    ||||||||||||||| | |||| ||||||||||||||| ||||||| ||||| |||| |||||||||| |||||||||||||||||||||||||||||||    
T  3201019 ttacaaaaattttagggcgaggagatggtgccccagtctaaggcagagaagatcttcaggctcaaagaacacttacaaaggtaattacatttacctccct 3200920  T
Q  112 ccaaaggcactagcggggctcgaacccgggttctct 147  Q
    ||||||||||||||| |||||||| || ||||||||    
T  3200919 ccaaaggcactagcgaggctcgaatccaggttctct 3200884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 2357069 - 2357207
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||  |||||| |||| |||||| |||| |||||||||||||||    
T  2357069 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcatggaagaccttcgaactcaaa-agcatttacaatggtatttacatttacctccc 2357167  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||| ||||| ||  |||||||||||||||||||||    
T  2357168 tccaaaggtactagtggaactcgaacccgggttctctcgg 2357207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 7860139 - 7860278
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| | ||||||||| |||| ||||||||||||| ||| | ||||||||||||||| |||||||||| |||  ||||||||||||||    
T  7860139 gttacaaaaattttagggagaggggatgatgcctcagtccaaggcagagaaaatcttcgggctcaaagaacacttacaaatgtatgtacatttacctccc 7860238  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||||||||||||||||| ||||| |||||||||||    
T  7860239 tccaaaggcactagcggggctcaaacccaggttctctcgg 7860278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 20 - 149
Target Start/End: Original strand, 30372682 - 30372811
Alignment:
Q  20 attttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 119  Q
    ||||||| ||||||| ||||| ||||||| ||||||| ||||||||||||||||||||||||||| |||||| || |||||||||||||| |||||||||    
T  30372682 attttagggtgagggtatggtaccccagttcaaggcatggaagaccttcgggctcaaagagcactaacaaagatatttacatttacctccttccaaaggc 30372781  T
Q  120 actagcggggctcgaacccgggttctctcg 149  Q
    |||||||| |||||||||| || |||||||    
T  30372782 actagcggagctcgaacccaggatctctcg 30372811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 17 - 148
Target Start/End: Complemental strand, 33066723 - 33066592
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    ||||||||||  |||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||| || ||||||||||||| |||||||    
T  33066723 aaaattttaggatgaggggatggtgccccagtccaaggtagagaagaccttcaggctcaaagagcacttacaaagatatttacatttacctctctccaaa 33066624  T
Q  117 ggcactagcggggctcgaacccgggttctctc 148  Q
    | |||||| |  |||||||||||| |||||||    
T  33066623 gacactagtgaagctcgaacccggattctctc 33066592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 149
Target Start/End: Original strand, 13047156 - 13047282
Alignment:
Q  18 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 117  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||   |||||||||| ||||||||||||||||||    
T  13047156 aaattttagggtgaggggatggtgctccagtccaaggcagggaagatctttgggctcaaagagcactt---aaggtaattatatttacctccctccaaag 13047252  T
Q  118 gcactagcggggctcgaacccgggttctctcg 149  Q
      ||  ||||||||||||||||| ||||||||    
T  13047253 --acatgcggggctcgaacccggattctctcg 13047282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 21487266 - 21487181
Alignment:
Q  32 ggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 117  Q
    |||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||  || ||||||||||||||||||||||    
T  21487266 ggggatggtgccccagtctaaggcagggaagactttcgggctcaaagagcacttacaaaaatatttacatttacctccctccaaag 21487181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 4553561 - 4553666
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctc-cctccaaaggc 119  Q
    ||||||||||||||||||||||||||||| ||| ||| |||||||| ||| ||||||||| ||||||||| ||| ||| ||||||||| ||||||||  |    
T  4553561 ttttagagtgaggggatggtgccccagtctaagacagagaagacctccggactcaaagagtacttacaaatgtatttatatttacctctcctccaaaaac 4553660  T
Q  120 actagc 125  Q
    ||||||    
T  4553661 actagc 4553666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 2098825 - 2098875
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagacctt 67  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  2098825 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagacctt 2098875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 80 - 135
Target Start/End: Complemental strand, 20961551 - 20961496
Alignment:
Q  80 gcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaa 135  Q
    ||||||||||| | | |||||||||||||||||||| ||||||||||| |||||||    
T  20961551 gcacttacaaatggatttacatttacctccctccaagggcactagcggagctcgaa 20961496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 30477240 - 30477280
Alignment:
Q  72 ctcaaagagcacttacaaaggtaattacatttacctccctc 112  Q
    ||||||||| ||||||||||||| ||| |||||||||||||    
T  30477240 ctcaaagagaacttacaaaggtatttagatttacctccctc 30477280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 130; Significance: 2e-67; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 8400988 - 8400855
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400988 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 8400889  T
Q  117 ggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||||||||||||||||||||||    
T  8400888 ggcactagcggggctcgaacccgggttctctcgg 8400855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 7417931 - 7417798
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7417931 aaaattttagggtgaggggatggtgccccagtccaaggcagtgaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 7417832  T
Q  117 ggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||||||||||||||||||||||    
T  7417831 ggcactagcggggctcgaacccgggttctctcgg 7417798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 50823837 - 50823698
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50823837 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 50823738  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||| |||| ||||||||||| |||||||||    
T  50823737 tccaaaggcactaacgggactcgaacccggattctctcgg 50823698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 50852023 - 50852162
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50852023 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 50852122  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||| |||| ||||||||||| |||||||||    
T  50852123 tccaaaggcactaacgggactcgaacccggattctctcgg 50852162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 35198898 - 35198765
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||    
T  35198898 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctgcaaa 35198799  T
Q  117 ggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||| ||| |||||||||||||||||||||||||    
T  35198798 ggcattagtggggctcgaacccgggttctctcgg 35198765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 17 - 149
Target Start/End: Complemental strand, 22856020 - 22855888
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||    
T  22856020 aaaattttagggtgaggggatggtgctccagtccaaggcagggaagacctttgggcttaaagagcacttacaaaggtaattacatttacctccctccaaa 22855921  T
Q  117 ggcactagcggggctcgaacccgggttctctcg 149  Q
    | ||||||||||||||||||| |||||||||||    
T  22855920 gacactagcggggctcgaacctgggttctctcg 22855888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 43334046 - 43334186
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||||| |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  43334046 ggttacaaaatttttagggtgaggggatggtaccccagtccaaggcagggaagaccttcgggctcaaatagcacttacaaaagtatttacatttacctcc 43334145  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||| ||| |||||||||||||||||| |||||||||||||    
T  43334146 ctcccaagacactagcggggctcgaactcgggttctctcgg 43334186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 52545454 - 52545332
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||||||||||||||  |||    
T  52545454 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagactacttacaaaagtatttacatttacctccctttaaa 52545355  T
Q  117 ggcactagcggggctcgaacccg 139  Q
    |||||||||||||||||||||||    
T  52545354 ggcactagcggggctcgaacccg 52545332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 34824685 - 34824556
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||||||    
T  34824685 ttttagggtgaggggatggtgccccagtccaaggccgggaagaccttcgggatcaaagagcacttacaaagataattacatttacctcccttcaaaggca 34824586  T
Q  121 ctagcggggctcgaacccgggttctctcgg 150  Q
    ||| |||| ||||||| | |||||||||||    
T  34824585 ctaacgggactcgaactcaggttctctcgg 34824556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 55468129 - 55468000
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcggg-ctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 119  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||    
T  55468129 ttttagggtgaggggatggtgccccagtccaaggcagagaagaccttcggggctcaaagagcacttacaaaggtatttacatttacctccctccaaacgc 55468030  T
Q  120 actagcggggctcgaacccgggttctctcg 149  Q
    | ||| ||||||||||||||| ||||||||    
T  55468029 attagtggggctcgaacccggattctctcg 55468000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 29636009 - 29635883
Alignment:
Q  10 ggttacaaaaattttagagtgaggggat-ggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctc 108  Q
    ||||||| ||||||||| ||||||| || ||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||    
T  29636009 ggttacagaaattttagcgtgagggaattggtgccccactccaaggcagggaagacattcgggcttaaagagcacttacaaaggtaattacatttacctc 29635910  T
Q  109 cctccaaaggcactagcggggctcgaa 135  Q
    ||| |||||||||||||| ||||||||    
T  29635909 ccttcaaaggcactagcgaggctcgaa 29635883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 121
Target Start/End: Original strand, 22371729 - 22371832
Alignment:
Q  18 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 117  Q
    ||||||||| |||||||||||||||||||||| || |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  22371729 aaattttagggtgaggggatggtgccccagtctaaagcagggaagatcttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaag 22371828  T
Q  118 gcac 121  Q
    ||||    
T  22371829 gcac 22371832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 37330606 - 37330692
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 103  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  37330606 aaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcggactcaaagagcacttacaaaggtaattacattt 37330692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 19872476 - 19872593
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||| |||||||||||  ||||||||||||||||||||||||| ||||||||||||||||  |||||||| |||||||||||||||||  ||||||| ||    
T  19872476 gttataaaaattttaggatgaggggatggtgccccagtccaagacagggaagaccttcggattcaaagagtacttacaaaggtaattaattttaccttcc 19872575  T
Q  111 tccaaaggcactagcggg 128  Q
    ||||||||||| ||||||    
T  19872576 tccaaaggcacaagcggg 19872593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 30534902 - 30534987
Alignment:
Q  18 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 103  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  30534902 aaattttagggtgaggggatggtaccccagtccaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacattt 30534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 54 - 149
Target Start/End: Original strand, 48077977 - 48078072
Alignment:
Q  54 gcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 149  Q
    ||||||||||||||| |||||||||||||||||||||| || |||||||||||| |||||||||||||||| | |||||||||||| |||||||||    
T  48077977 gcagggaagaccttcaggctcaaagagcacttacaaagatatttacatttaccttcctccaaaggcactagtgaggctcgaacccgagttctctcg 48078072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 37454743 - 37454829
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattt 103  Q
    |||||||||| ||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37454743 aaaattttagggtgaggggatggtgccccaatctaaggtagggaagaccttcgggctcaaagagcacttacaaaggtaattatattt 37454829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 25910658 - 25910738
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaa 90  Q
    ||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||    
T  25910658 ggttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagatcttcggactcaaagagcacttacaaa 25910738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 50725989 - 50726129
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||||| || ||| |||| |||||||||||||| ||||| | ||||||||| ||||  |||||| || ||||||||| ||||||| |||||||| |    
T  50725989 ggttacaaaatttgtagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttc 50726088  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||| ||||| |||||||||||||||  |||||||||    
T  50726089 ctccaaagacactaacggggctcgaacccgaattctctcgg 50726129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 50786859 - 50786719
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||||| || ||| |||| |||||||||||||| ||||| | ||||||||| ||||  |||||| || ||||||||| ||||||| |||||||| |    
T  50786859 ggttacaaaatttgtagggtgaagggatggtgccccaatccaaagtagggaagactttcgaactcaaaaagaacttacaaaagtaattatatttaccttc 50786760  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||| ||||| |||||||||||||||  |||||||||    
T  50786759 ctccaaagacactaacggggctcgaacccgaattctctcgg 50786719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 136
Target Start/End: Complemental strand, 42876355 - 42876229
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||| ||| ||||| ||||| ||||||||||| ||||||||  ||||||||| |||  | |||||||||||||||||||||||||||||||||||||    
T  42876355 ggttacagaaaatttagggtgagaggatggtgccctagtccaagatagggaagacattcaagttcaaagagcacttacaaaggtaattacatttacctcc 42876256  T
Q  110 ctccaaaggcactagcggggctcgaac 136  Q
     || |||| ||||||  ||||||||||    
T  42876255 atctaaagacactagtcgggctcgaac 42876229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 111
Target Start/End: Original strand, 30203652 - 30203744
Alignment:
Q  16 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 111  Q
    |||| |||||||||||||||||||||||||||| |||| || |||| ||||||| ||||||||| || ||||||||||  ||||||||||||||||    
T  30203652 aaaatttttagagtgaggggatggtgccccagttcaagaca-ggaaaaccttcgagctcaaagaacatttacaaaggt--ttacatttacctccct 30203744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 118
Target Start/End: Complemental strand, 25589347 - 25589253
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||| |||||||| |||||||||||||       |||| |||||||||||||||| |||||| |||||||||||||| ||||||    
T  25589347 aaaattttagggtgaggggagggtgcccccgtccaaggcaggg-------tcggactcaaagagcacttactaaggtatttacatttacctccttccaaa 25589255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 10 - 61
Target Start/End: Complemental strand, 773717 - 773666
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaa 61  Q
    ||||||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  773717 ggttacaaaaattctagggtgaggggatggtgccccagtccaaggaagggaa 773666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 93
Target Start/End: Original strand, 39438821 - 39438903
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggt 93  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||| ||| ||||| || ||  | ||||| |||||||||||||    
T  39438821 ggttacaaaaattttagggtgaggg-atggtgccccagttcaaggtaggaaagacttttggatttaaagaacacttacaaaggt 39438903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Original strand, 31297529 - 31297574
Alignment:
Q  23 ttagagtgaggggatggtgccccagtccaaggcagggaagaccttc 68  Q
    |||| ||||||| ||||| ||||||||||||||| |||||||||||    
T  31297529 ttagggtgagggcatggttccccagtccaaggcaaggaagaccttc 31297574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 129; Significance: 7e-67; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 19723451 - 19723311
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||    
T  19723451 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagatctttgggctcaaagagcacttacaaaggtaattacatttacctcc 19723352  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  19723351 ctccaaaggcactagcggggctcgaacccgggttctctcgg 19723311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 11404141 - 11404002
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  11404141 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 11404042  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcg 149  Q
    |||||||| |||||||| ||||||||||| ||||||||||    
T  11404041 ctccaaagacactagcgaggctcgaacccaggttctctcg 11404002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 4840279 - 4840140
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||| ||||||||| ||||||||||||||||| |||||||||||||||||||||| || |||||||||||||||||| |||||| |||||||||||||    
T  4840279 gttacagaaattttagggtgaggggatggtgccctagtccaaggcagggaagacctttggactcaaagagcacttacaatggtaatgacatttacctccc 4840180  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  4840179 tccaaaggcactagcggggctcgaacccgggttctctcgg 4840140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 148
Target Start/End: Complemental strand, 29767326 - 29767190
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||    
T  29767326 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagaacacttacaaaggtaatt--atttacctcc 29767229  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctc 148  Q
    || |||||||||||||||||||||| |||||||||||||    
T  29767228 cttcaaaggcactagcggggctcgaccccgggttctctc 29767190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 17 - 148
Target Start/End: Original strand, 32296638 - 32296769
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32296638 aaaattttagggtgaggggatggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcccttcaaa 32296737  T
Q  117 ggcactagcggggctcgaacccgggttctctc 148  Q
    ||||||||| ||||| ||||||||||||||||    
T  32296738 ggcactagcagggcttgaacccgggttctctc 32296769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 21 - 132
Target Start/End: Complemental strand, 17095679 - 17095568
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17095679 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 17095580  T
Q  121 ctagcggggctc 132  Q
    ||||||||||||    
T  17095579 ctagcggggctc 17095568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 22711648 - 22711509
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    ||||||||||||||||  |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  22711648 gttacaaaaattttaggatgaggggatggtgccccagtccaaggcaaggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 22711549  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||||| |||  || ||| |||||| ||||||||||    
T  22711548 tccaaaggcattagttggactcaaacccgagttctctcgg 22711509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 11 - 147
Target Start/End: Original strand, 28739554 - 28739690
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    ||||||||| |||||| |||||||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| | ||    
T  28739554 gttacaaaatttttagggtgaggggatggtgctgcagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttactttcc 28739653  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctct 147  Q
    |||||||||||||| |||||| |||||| ||||||||    
T  28739654 tccaaaggcactagtggggcttgaacccaggttctct 28739690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 36261785 - 36261679
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||  ||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  36261785 gttacaaaaattttaaggtgaggggatggtgccccagttcaaggcagggaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccc 36261686  T
Q  111 tccaaag 117  Q
    |||||||    
T  36261685 tccaaag 36261679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 41553425 - 41553286
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||| |||||||||||||| |||||||||| | |    
T  41553425 ggttacaaaaattttagggtgaggggatggtgctccagtctaaggcagggaagaccttcgagctcaaagaacacttacaaaggtatttacatttacgttc 41553326  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcg 149  Q
    |||||||| || ||| ||| ||||||| ||||||||||||    
T  41553325 ctccaaagacattagtgggactcgaactcgggttctctcg 41553286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 38 - 121
Target Start/End: Original strand, 21355004 - 21355087
Alignment:
Q  38 ggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 121  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  21355004 ggtgccccagtccaaggcagggaagaccttcgggttcaaagagcacttacaaaggtaattacatttacctccctccaaaggcac 21355087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 11610418 - 11610280
Alignment:
Q  12 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||  | | |||||||||||||| ||| ||||||||||||| || ||| ||||||||  ||    
T  11610418 ttacaaaaattttagggtgaggggatggtgccccagtccaagataagtaagaccttcgggcttaaacagcacttacaaagatatttatatttacctttct 11610319  T
Q  112 ccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||| |||||||| ||| | ||||||||    
T  11610318 ccaaaggcactagcgaggctcgaatccgagatctctcgg 11610280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 10 - 104
Target Start/End: Original strand, 11909415 - 11909509
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacattta 104  Q
    |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||    
T  11909415 ggttacaaaatttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgagctcaaagagcacttagaaaggtatttacattta 11909509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 17 - 147
Target Start/End: Complemental strand, 30682971 - 30682842
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||  ||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||| ||||||||| ||| |||||||    
T  30682971 aaaattttaaggtgaggggatggtgccc-agtccaaggcagggaagatcttcgggctcaaagaacacttacaaaagtatttacatttatctctctccaaa 30682873  T
Q  117 ggcactagcggggctcgaacccgggttctct 147  Q
    ||||| || ||||||||||| |||| |||||    
T  30682872 ggcaccagtggggctcgaacacgggctctct 30682842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 16 - 117
Target Start/End: Complemental strand, 43288206 - 43288105
Alignment:
Q  16 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 115  Q
    ||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||| | || ||||||||||||||||||||||||||||||||    
T  43288206 aaaaaatttagggtgaggggatggtgctccagtccaaggcagggaagaccttcggactcaaaaatcaattacaaaggtaattacatttacctccctccaa 43288107  T
Q  116 ag 117  Q
    ||    
T  43288106 ag 43288105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 51 - 135
Target Start/End: Original strand, 24475029 - 24475113
Alignment:
Q  51 aaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaa 135  Q
    |||||||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  24475029 aaggcaggaaagaccttcgggctcaaagaacacttacaaaggtatttacatttacctccctccaaaggcactagcggagctcgaa 24475113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 27881044 - 27881118
Alignment:
Q  74 caaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctc 148  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27881044 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctc 27881118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 28021225 - 28021299
Alignment:
Q  74 caaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctctc 148  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  28021225 caaagagcacttacaaaggtatttacatttacctcccttcaaaggcactagcggggctcgaacccgggttctctc 28021299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 27879553 - 27879620
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 78  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||    
T  27879553 gttacaaaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 27879620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 28019734 - 28019801
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 78  Q
    |||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||| |||||||||    
T  28019734 gttacaaaaattttagggtgaggggatggtgccccagtccaaggtagggaagatcttcaggctcaaag 28019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 44741914 - 44742038
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    ||||||||||||| || ||||||||||||  ||||||||||||||||| |||||| | || ||    ||||||||||||||| | | | ||| || || |    
T  44741914 gttacaaaaattt-agggtgaggggatggcaccccagtccaaggcaggtaagaccataggact--tggagcacttacaaagggattaatattaacttctc 44742010  T
Q  111 tccaaaggcactagcggggctcgaaccc 138  Q
    |||||||||||||||| |||||||||||    
T  44742011 tccaaaggcactagcgaggctcgaaccc 44742038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 2e-64; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 17064463 - 17064323
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  17064463 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggcttaaagagcacttacaaaggtatttacatttacctcc 17064364  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  17064363 ctccaaaggcactagcgaggctcgaacccgggttctctcgg 17064323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 147
Target Start/End: Original strand, 20983001 - 20983132
Alignment:
Q  16 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 115  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||||||||| |||| |    
T  20983001 aaaatttttagggtgaggggatggtgccccagtccaaggcagggaagactttcgggctcaaagagcacttacaaatgtaattgcatttacctctctccga 20983100  T
Q  116 aggcactagcggggctcgaacccgggttctct 147  Q
    ||||||||||||||||||||||||| ||||||    
T  20983101 aggcactagcggggctcgaacccggattctct 20983132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 37976683 - 37976546
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattac----atttacctccctc 112  Q
    |||||||||| ||||||||||||||||||||| ||||||||| || ||||||||||||||| |||||||||||||||| ||||    ||||||||||||     
T  37976683 aaaattttagggtgaggggatggtgccccagttcaaggcaggaaaaaccttcgggctcaaatagcacttacaaaggtatttacattaatttacctccctt 37976584  T
Q  113 caaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||| ||||||||||||||||||||| |||||||||||    
T  37976583 caaatgcactagcggggctcgaacccaggttctctcgg 37976546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 109
Target Start/End: Complemental strand, 41910957 - 41910865
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||||  ||||||||||||||||||||| |||||||| |||||| |||||||||||||| ||||||||||| |||||||||||||||||    
T  41910957 aaaattttaaggtgaggggatggtgccccagttcaaggcagagaagacattcgggctcaaagaacacttacaaagttaattacatttacctcc 41910865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 31673956 - 31673863
Alignment:
Q  23 ttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 117  Q
    |||| |||||||| |||||||||||||||||||||||| |||||| |||||||||| |||||| |||||| | |||||||| |||| ||||||||    
T  31673956 ttagggtgaggggttggtgccccagtccaaggcagggaggaccttagggctcaaagggcactt-caaagggatttacattttcctctctccaaag 31673863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 5009416 - 5009531
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||| ||||||| ||| ||||| ||||||| |||||||||||||  ||||||| || |||||||  || ||||||||| ||| |||||||    
T  5009416 aaaattttagggtg-ggggatgatgcaccagttcaaggcatggaagaccttcggattcaaagaacatttacaaaaatatttacatttatctctctccaaa 5009514  T
Q  117 ggcactagcggggctcg 133  Q
    | ||||| |||||||||    
T  5009515 gacactaacggggctcg 5009531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 35237052 - 35237102
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaa 61  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  35237052 gttacagaaattttagagtgaggggatggtgcctcagtccaaggcagggaa 35237102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 22 - 140
Target Start/End: Original strand, 39162859 - 39162977
Alignment:
Q  22 tttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttaca-aaggtaattacatttacct---ccctccaaag 117  Q
    ||||| |||| |||| |||||||||||||||||||  |||||||    ||||||||||||| ||||| |||||| ||||||||||||    ||||||| |    
T  39162859 tttagggtgatgggacggtgccccagtccaaggcacagaagacc----ggctcaaagagcatttacacaaggtatttacatttaccttcctcctccaagg 39162954  T
Q  118 gcactagcggggctcgaacccgg 140  Q
    |||||||  ||||||||||||||    
T  39162955 gcactagttgggctcgaacccgg 39162977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 35237103 - 35237154
Alignment:
Q  98 acatttacctccctccaaaggcactagcggggctcgaacccgggttctctcg 149  Q
    |||||||||||||| ||||| ||||||||||||||||| || | ||||||||    
T  35237103 acatttacctcccttcaaagacactagcggggctcgaatccagattctctcg 35237154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 18303352 - 18303409
Alignment:
Q  60 aagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 117  Q
    |||||||||||| | |||||||||||||||| ||| |||| ||||| | |||||||||    
T  18303352 aagaccttcgggtttaaagagcacttacaaaagtatttacgtttactttcctccaaag 18303409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 30054445 - 30054574
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  30054445 ttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaaggtaattacatttacctccctccaaaggca 30054544  T
Q  121 ctagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||||||||||||||||||    
T  30054545 ctagcggggctcgaacccgggttctctcgg 30054574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 20014597 - 20014458
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||||||    
T  20014597 gttacaaaaattttagggtgaggggatggtgcctcagtccaaggcagggaagaccttcaggctcaaagagcatttacaaatgtaattacatttacctccc 20014498  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||| ||||||||| |||||||||||||||||||||    
T  20014497 tccaaaggtactagcgggactcgaacccgggttctctcgg 20014458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 149
Target Start/End: Original strand, 30370052 - 30370191
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||  |||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30370052 ggttacatgaattttaaggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 30370151  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcg 149  Q
    |||||||| |||||| ||||||||||||||| ||||||||    
T  30370152 ctccaaagacactagtggggctcgaacccggattctctcg 30370191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 10 - 150
Target Start/End: Complemental strand, 45324146 - 45324006
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  45324146 ggttgcaaaaattttagggtgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaggagcacttacaaaggtatttacatttacctcc 45324047  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||| |||||||||||||| |||||| |||||||||||    
T  45324046 ctccaaaagcactagcggggctggaacccaggttctctcgg 45324006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 149
Target Start/End: Complemental strand, 12025321 - 12025182
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |    
T  12025321 ggttacaaaaattttagggtgagggggtggtgccccagtccaaggcagggaagaccttcgggctcaaatagtacttacaaaggtaattacatttaccttc 12025222  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcg 149  Q
    ||||||||||||||  ||||||||||||| ||||||||||    
T  12025221 ctccaaaggcactaatggggctcgaacccaggttctctcg 12025182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 21 - 149
Target Start/End: Complemental strand, 21090244 - 21090116
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||| ||||    
T  21090244 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcatttacaaatgtatttacatttacctccctccaacggca 21090145  T
Q  121 ctagcggggctcgaacccgggttctctcg 149  Q
    |||||||||||||||||||  ||||||||    
T  21090144 ctagcggggctcgaacccgaattctctcg 21090116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 132
Target Start/End: Complemental strand, 22024242 - 22024121
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||     
T  22024242 gttacataaattttagggtgaggggatggtgccccagtccaaggcagagaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcca 22024143  T
Q  111 tccaaaggcactagcggggctc 132  Q
    ||||||||||||||| ||||||    
T  22024142 tccaaaggcactagcagggctc 22024121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 4573517 - 4573379
Alignment:
Q  12 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 111  Q
    ||||||||||||||| |||||||||| ||||| ||||||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  4573517 ttacaaaaattttagggtgaggggatagtgcctcagtccaaaacagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccct 4573418  T
Q  112 ccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||| || ||| |||||||||||||||||||||||||    
T  4573417 ccaaagacattagtggggctcgaacccgggttctctcgg 4573379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 19 - 150
Target Start/End: Original strand, 30850841 - 30850972
Alignment:
Q  19 aattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaagg 118  Q
    |||||||| |||||||||||||||||||||||||| |||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||     
T  30850841 aattttagggtgaggggatggtgccccagtccaagacaggaaagaccttcgggttcaaagagcacttacaaaggcaattatatttacctccctccaaaga 30850940  T
Q  119 cactagcggggctcgaacccgggttctctcgg 150  Q
    ||||| ||||||||||||||| ||||||||||    
T  30850941 cactaacggggctcgaacccgagttctctcgg 30850972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 14498072 - 14498182
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||    
T  14498072 gttacaaaaattttagggtgaggggatggcgccccagtccaaggcagggaagacctttggtctcaaagagcacttacaaaggtaattacatttacctccc 14498171  T
Q  111 tccaaaggcac 121  Q
    |||||||||||    
T  14498172 tccaaaggcac 14498182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 10 - 137
Target Start/End: Original strand, 33763246 - 33763373
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||| ||||||||| ||||||||||| ||||||||| |||||||||||| || |||||||||||| | ||||||||||||||||||||||| |||||    
T  33763246 ggttacagaaattttagggtgaggggatgatgccccagttcaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctcc 33763345  T
Q  110 ctccaaaggcactagcggggctcgaacc 137  Q
    ||| ||||||||||||||||||||||||    
T  33763346 ctctaaaggcactagcggggctcgaacc 33763373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 10 - 124
Target Start/End: Original strand, 33762532 - 33762646
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||| || |||||||||||| | ||||||||||||||||||||||| |||||    
T  33762532 ggttacaaaaattttagggtgaggggatgatgccccagtccaaggcagggaaaactttcgggctcaaaaaacacttacaaaggtaattacatttgcctcc 33762631  T
Q  110 ctccaaaggcactag 124  Q
    ||| |||||||||||    
T  33762632 ctctaaaggcactag 33762646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 28 - 106
Target Start/End: Original strand, 35371755 - 35371833
Alignment:
Q  28 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacc 106  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35371755 gtgaggggatggtgccccagtccaaggcagggaagaacttcgggctcaaagagcacttacaaaggtaattacatttacc 35371833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 30 - 138
Target Start/End: Original strand, 44438562 - 44438670
Alignment:
Q  30 gaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcgggg 129  Q
    ||||||||||| ||||||| ||||||||||||||||||||   | ||||| |||||||||| ||||||||||||||||||||||||||||| |||||| |    
T  44438562 gaggggatggtaccccagttcaaggcagggaagaccttcgaatttaaagaacacttacaaaagtaattacatttacctccctccaaaggcattagcggag 44438661  T
Q  130 ctcgaaccc 138  Q
    |||||||||    
T  44438662 ctcgaaccc 44438670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 35618115 - 35618034
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaag 91  Q
    |||||||||| |||||| ||||||||||||| ||||||||||| ||| ||||||||||||||||||||||||||||||||||    
T  35618115 ggttacaaaatttttagggtgaggggatggtaccccagtccaaagcaaggaagaccttcgggctcaaagagcacttacaaag 35618034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 17015260 - 17015192
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaag 78  Q
    ||||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  17015260 ggttacataaattttaggatgaggggatggtgccccagtccaaagcagggaagaccttcgggctcaaag 17015192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 150
Target Start/End: Complemental strand, 15034501 - 15034455
Alignment:
Q  104 acctccctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||||||||||||||||  ||||||||||| ||||||| ||||    
T  15034501 acctccctccaaaggcactagtagggctcgaacctgggttctttcgg 15034455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 121; Significance: 4e-62; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 150
Target Start/End: Original strand, 46494390 - 46494530
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    |||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  46494390 ggttacaaaatttttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctcc 46494489  T
Q  110 ctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  46494490 ctccaaaggcactagtggggctcgaacccgggttctctcgg 46494530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 51066632 - 51066493
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    ||||||||  |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  51066632 gttacaaattttttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattatatttacctccc 51066533  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||||| ||||||||||| ||||||||||    
T  51066532 tccaaaggcactagcggagctcgaacccgagttctctcgg 51066493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 149
Target Start/End: Complemental strand, 36192673 - 36192542
Alignment:
Q  18 aaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaag 117  Q
    ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||    
T  36192673 aaattttagggtgaggggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcatttacaaaagtaattacatttacctccctccaaag 36192574  T
Q  118 gcactagcggggctcgaacccgggttctctcg 149  Q
    ||||||| ||||||||||||||||||||||||    
T  36192573 gcactagtggggctcgaacccgggttctctcg 36192542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 51713958 - 51714097
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  51713958 gttacaaaaattttagggtgaggggatggtgccccagttcaaagcagggaagaccttcgggctcaaagagcacttacaaaggtatttatatttacctccc 51714057  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    | |||||||||||| |||||||||||||||||||||||||    
T  51714058 ttcaaaggcactagtggggctcgaacccgggttctctcgg 51714097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 32139303 - 32139164
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||| ||||| ||||| |||| ||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||    
T  32139303 gttataaaaaatttagggtgaagggatggtgccccagtccaaggcagagaagaccttcaggctcaaagaacacttacaaaggtaattacatttacctccc 32139204  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||| ||||||||||| |||||||| |||||||||||    
T  32139203 tccaaagacactagcggggttcgaacccaggttctctcgg 32139164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 7173584 - 7173717
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||||    
T  7173584 aaaattttagggtgaggggatggtgccccagtccaacgcagggaagaccttcgggctcaaagagcacttacaaaggtattgacatttacctccttccaaa 7173683  T
Q  117 ggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||||||| || |||||  |||||||||||    
T  7173684 ggcactagcgggtcttgaacctaggttctctcgg 7173717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 30970383 - 30970516
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||    
T  30970383 aaaattttagggtgaggggatggtgccccagtctaaggtagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctcccttcaaa 30970482  T
Q  117 ggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||| | ||||||||||||| |||||||||    
T  30970483 ggcactagtgaggctcgaacccggattctctcgg 30970516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 50905887 - 50905748
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||  ||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||| |||||||||||||||| |    
T  50905887 gttacaaaaattttagggtgaaaggatggtgccccagttcaaggcatggaagaccttcggactcaaagagcacctacaaagataattacatttacctctc 50905788  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||||||||||||||||||||||| | |||||||||    
T  50905787 tccaaaggcactagcggggctcgaacccagattctctcgg 50905748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 39863777 - 39863910
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||| ||| | |||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  39863777 aaaattttagggtgaggggatagtgtctcagtccaaggtagagaagaccttcgggttcaaagagcacttacaaaggtaattacatttacttccctccaaa 39863876  T
Q  117 ggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||||||||  |||||||||||||||||||    
T  39863877 ggcactagcggggtccgaacccgggttctctcgg 39863910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 8740550 - 8740448
Alignment:
Q  48 tccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctct 147  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8740550 tccaaggcatggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccctccaaaggcactagcggggctcgaacccgggatctct 8740451  T
Q  148 cgg 150  Q
    |||    
T  8740450 cgg 8740448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 29576554 - 29576444
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||    
T  29576554 gttacaaaaattttagggtgagggggtggtgccccaatccaaggcagggaagaccttcgggctcaaagagcacttacaaagttatttacatttacctccc 29576455  T
Q  111 tccaaaggcac 121  Q
    |||||||||||    
T  29576454 tccaaaggcac 29576444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 10 - 122
Target Start/End: Complemental strand, 55231827 - 55231715
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| ||| ||||||||||||||    
T  55231827 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagacattcaggctcaaagagcacttacaaaagtatttacatttacctcc 55231728  T
Q  110 ctccaaaggcact 122  Q
    || ||||||||||    
T  55231727 cttcaaaggcact 55231715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 2570341 - 2570216
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||| || ||| || | || ||| ||||||||||    
T  2570341 ggttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagatcttcggactcaaagaacatttataatgatatttatatttacctcc 2570242  T
Q  110 ctccaaaggcactagcggggctcgaa 135  Q
    |||||||||||| ||||| |||||||    
T  2570241 ctccaaaggcaccagcggagctcgaa 2570216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 47626986 - 47627127
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| |||||| |||||||  |||||||||||||||||||||||||| | |||||||| | ||| | ||||| |||||||||||||||    
T  47626986 gttacaaaaattttagggtgaggagatggtgttccagtccaaggcagggaagaccttcgagttcaaagagtatttatagaggtatttacatttacctccc 47627085  T
Q  111 tccaaaggcactagcgggg--ctcgaacccgggttctctcgg 150  Q
    | |||||||||||| ||||  |||||| ||||||||||||||    
T  47627086 ttcaaaggcactagtggggctctcgaatccgggttctctcgg 47627127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 11 - 112
Target Start/End: Complemental strand, 676867 - 676766
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||  || |||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  676867 gttacaaaaattttaaggtaaggggatggtgttacagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacacttacctccc 676768  T
Q  111 tc 112  Q
    ||    
T  676767 tc 676766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 22304090 - 22304167
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggta 94  Q
    |||||||||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  22304090 aaaattttagggtgagaggatggtgccccagtccaaggtagggaagaccttcgggctcaaagagcacttacaaaggta 22304167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 11 - 124
Target Start/End: Complemental strand, 41523536 - 41523423
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    ||||||||| ||||||  ||| ||||||||| |||| ||||||  |||||||||||||| |||||||||||||||| ||||||| |||||||||||||||    
T  41523536 gttacaaaatttttaggatgaagggatggtgtcccaatccaagatagggaagaccttcgagctcaaagagcacttataaaggtatttacatttacctccc 41523437  T
Q  111 tccaaaggcactag 124  Q
    ||||||| ||||||    
T  41523436 tccaaagacactag 41523423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 2294719 - 2294841
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggca 120  Q
    |||||| |||||||||||||||||||||| ||||||| |||||| ||||||||||| || |||||      |||||||||||||||| ||||||||||||    
T  2294719 ttttagggtgaggggatggtgccccagtctaaggcagtgaagactttcgggctcaacgaacactt------gtaattacatttaccttcctccaaaggca 2294812  T
Q  121 ctagcggggctcgaacccgggttctctcg 149  Q
    ||||||   |||||||||| |||||||||    
T  2294813 ctagcgaaactcgaacccgagttctctcg 2294841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 10 - 117
Target Start/End: Original strand, 4080544 - 4080651
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||  | ||||||||||||| ||| |||||| ||| |||||| ||| | ||||||||||| ||||||| ||||||||||||||||||    
T  4080544 ggttacaaaaattttaaggcgaggggatggtgctccaatccaagacagagaagacattcagactcaaagagcatttacaaatgtaattacatttacctcc 4080643  T
Q  110 ctccaaag 117  Q
    ||||||||    
T  4080644 ctccaaag 4080651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 50399634 - 50399763
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||| ||| ||||| ||||| ||||| |||||   ||||||| || |||||| ||  |||||||||| |||||||||||||| |||||||||||| |    
T  50399634 ggttacataaaatttagggtgagcggatgatgcccttatccaaggtagagaagacatttaggctcaaagaacacttacaaaggtatttacatttaccttc 50399733  T
Q  110 ctccaaaggcactagcggggctcgaacccg 139  Q
    ||||||  ||||||||||||||||||||||    
T  50399734 ctccaagagcactagcggggctcgaacccg 50399763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 139
Target Start/End: Original strand, 51279035 - 51279154
Alignment:
Q  20 attttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggc 119  Q
    ||||||| ||||||||||||||||  | |||||||  ||||||||||| |||||||||||||||||||||| ||| ||||||| ||||||||| ||| ||    
T  51279035 attttagggtgaggggatggtgccttaatccaaggttgggaagacctttgggctcaaagagcacttacaaaagtatttacattgacctccctctaaaagc 51279134  T
Q  120 actagcggggctcgaacccg 139  Q
    | |||  |||||| ||||||    
T  51279135 attagtagggctcaaacccg 51279154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 47 - 148
Target Start/End: Complemental strand, 22423479 - 22423378
Alignment:
Q  47 gtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggttctc 146  Q
    |||||| ||||||||||||||||  | |||||| |||||||||| ||| ||||||||||||||||||||||| |||| | ||||||||| ||| | ||||    
T  22423479 gtccaaagcagggaagaccttcgaacacaaagaacacttacaaaagtatttacatttacctccctccaaaggtactaaccgggctcgaatccgagatctc 22423380  T
Q  147 tc 148  Q
    ||    
T  22423379 tc 22423378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 83
Target Start/End: Original strand, 23084459 - 23084530
Alignment:
Q  12 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcac 83  Q
    |||||||| |||||| |||||| |||||| ||||||| ||||| ||||||||||||||| ||||||||||||    
T  23084459 ttacaaaatttttagggtgaggagatggtaccccagttcaaggtagggaagaccttcggactcaaagagcac 23084530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 86
Target Start/End: Original strand, 37990606 - 37990663
Alignment:
Q  29 tgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcactta 86  Q
    |||||| ||||||||||||||||||| |||||||| |||| ||||||||||| |||||    
T  37990606 tgagggaatggtgccccagtccaaggtagggaagatcttcaggctcaaagagtactta 37990663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 40012646 - 40012548
Alignment:
Q  16 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 115  Q
    ||||| ||||| ||||| ||| |||| || ||||||| | ||||||||||||  | ||||| ||||||| ||||||| | ||||||||||||||||||||    
T  40012646 aaaaaatttagtgtgagaggacggtgtcctagtccaacgtagggaagaccttatgactcaa-gagcactcacaaagggatttacatttacctccctccaa 40012548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 51066283 - 51066240
Alignment:
Q  21 ttttagagtgaggggatggtgccccagtccaaggcagggaagac 64  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  51066283 ttttagggtgaggggatggtgccccagttcaaggcagggaagac 51066240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 120; Significance: 2e-61; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 35163743 - 35163882
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35163743 gttacaaaaattttagggtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctccc 35163842  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||||||| ||| ||||||||||||| |||||||||||    
T  35163843 tccaaaggcattagtggggctcgaaccctggttctctcgg 35163882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 10 - 129
Target Start/End: Complemental strand, 20685465 - 20685346
Alignment:
Q  10 ggttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 109  Q
    ||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20685465 ggttacaaaaattttagggtgaagggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctcc 20685366  T
Q  110 ctccaaaggcactagcgggg 129  Q
    ||||||||||||||||||||    
T  20685365 ctccaaaggcactagcgggg 20685346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 11 - 148
Target Start/End: Original strand, 19686820 - 19686957
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||| ||||||||| ||||||||||| |||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19686820 gttacagaaattttagggtgaggggatgatgccccagtctaagggaggaaagatcttcgggctcaaagagcacttacaaaggtaattacatttacctccc 19686919  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctc 148  Q
    | |||||||||||| ||||||||||||| |||||||||    
T  19686920 tacaaaggcactagaggggctcgaacccaggttctctc 19686957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 11 - 150
Target Start/End: Original strand, 2711733 - 2711866
Alignment:
Q  11 gttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccc 110  Q
    |||||||||||||||| ||||||||||||||      |||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  2711733 gttacaaaaattttagggtgaggggatggtg------tccaaggcagggaagaccttcgagctcaaagagcacttacaaaggtatttacatttacctccc 2711826  T
Q  111 tccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    |||||| ||||||| |||||||||| || |||||| ||||    
T  2711827 tccaaaagcactagtggggctcgaatccaggttctatcgg 2711866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 128
Target Start/End: Complemental strand, 17948814 - 17948702
Alignment:
Q  16 aaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaa 115  Q
    ||||||||||  |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||    
T  17948814 aaaaattttaaggtgaggggatggtgtcccagtccaagacagggaagaccttcgggctcaaagagcacttacaaaggtatttacatttacctctctccaa 17948715  T
Q  116 aggcactagcggg 128  Q
    || ||||||||||    
T  17948714 agacactagcggg 17948702  T

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Target: chr6; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 12 - 150
Target Start/End: Original strand, 14505519 - 14505655
Alignment:
Q  12 ttacaaaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccct 111  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||| ||||| || ||||||  | ||||||||||| ||||||||||||||||    
T  14505519 ttacaaaaattttag-gtgaggggatggtgccccagtccaaggcacggaagatcttcgcgcccaaagaatatttacaaaggta-ttacatttacctccct 14505616  T
Q  112 ccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||| ||||||||||||||||||  |||| ||||||||    
T  14505617 ccaaaagcactagcggggctcgaattcgggatctctcgg 14505655  T

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Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 28 - 123
Target Start/End: Complemental strand, 15070247 - 15070152
Alignment:
Q  28 gtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcacta 123  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||||||||||    
T  15070247 gtgaggggatggtgccccagtctaaggcagggaagaccttcgggctcaatgaacacttacaaatgtaattatatttacctccctccaaaggcacta 15070152  T

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Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 150
Target Start/End: Complemental strand, 14496406 - 14496352
Alignment:
Q  96 ttacatttacctccctccaaaggcactagcggggctcgaacccgggttctctcgg 150  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14496406 ttacatttacctccctccaaaggcactagtggggctcgaacccgggttctctcgg 14496352  T

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Target: chr6; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 24336718 - 24336640
Alignment:
Q  47 gtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagc 125  Q
    ||||||||||||||||| |||| |||||||| | |||||||||| ||| ||||||||||||||||||||||| ||||||    
T  24336718 gtccaaggcagggaagatcttcaggctcaaaaaacacttacaaaagtatttacatttacctccctccaaagggactagc 24336640  T

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Target: scaffold0021 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 149
Target Start/End: Original strand, 107691 - 107822
Alignment:
Q  17 aaaattttagagtgaggggatggtgccccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 116  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  107691 aaaattttag-gtgaggggatggtgccccagtccaaggcagggtagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaa 107789  T
Q  117 ggcactagcggggctcgaacccgggttctctcg 149  Q
    |||||||||||||||||||| ||||||||||||    
T  107790 ggcactagcggggctcgaactcgggttctctcg 107822  T

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Target: scaffold0691 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 43 - 148
Target Start/End: Original strand, 6994 - 7099
Alignment:
Q  43 cccagtccaaggcagggaagaccttcgggctcaaagagcacttacaaaggtaattacatttacctccctccaaaggcactagcggggctcgaacccgggt 142  Q
    |||||||||||| ||||||||||||||| |||||||| ||||| ||||||||||||||||||| |||||||||| ||||||||||| ||||||||||| |    
T  6994 cccagtccaaggtagggaagaccttcggactcaaagaacacttgcaaaggtaattacatttacttccctccaaacgcactagcgggactcgaacccggat 7093  T
Q  143 tctctc 148  Q
    ||||||    
T  7094 tctctc 7099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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