View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10186_high_20 (Length: 241)

Name: NF10186_high_20
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10186_high_20
NF10186_high_20
[»] chr3 (3 HSPs)
chr3 (1-227)||(32925327-32925536)
chr3 (49-135)||(25109746-25109832)
chr3 (77-134)||(20496659-20496716)
[»] chr1 (5 HSPs)
chr1 (1-154)||(12975695-12975848)
chr1 (7-224)||(37502111-37502327)
chr1 (1-154)||(33928971-33929124)
chr1 (49-224)||(7504458-7504632)
chr1 (15-134)||(10622025-10622146)
[»] chr5 (2 HSPs)
chr5 (8-151)||(3549008-3549150)
chr5 (9-114)||(8231786-8231890)
[»] chr4 (3 HSPs)
chr4 (15-177)||(10406461-10406622)
chr4 (31-216)||(43859786-43859970)
chr4 (56-224)||(2522126-2522294)
[»] chr8 (2 HSPs)
chr8 (57-154)||(32331762-32331857)
chr8 (107-216)||(42346783-42346892)
[»] chr2 (1 HSPs)
chr2 (15-187)||(36284522-36284688)
[»] chr7 (2 HSPs)
chr7 (96-221)||(18702675-18702796)
chr7 (72-156)||(18702795-18702877)


Alignment Details
Target: chr3 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 32925536 - 32925327
Alignment:
Q  1 attttgaggaaaaa-ttcaacttgccttctatggttgtgtggggttgaccaatatcttgcatgcaaaaatttatgcccttatgattgggattaagctttg 99  Q
    |||||||||||||| ||||||||||||||||||||||||| ||     ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  32925536 attttgaggaaaaaattcaacttgccttctatggttgtgttgg-----ccaatatcttgcatgcaaaaatttatgcccttatgattgagattaagctttg 32925442  T
Q  100 cagggaggctggttataagaaactagtttgttttttctgactctcttcatgtagtttatttaaagtgaaagaaagtgttgatgcttcatcgctatttgaa 199  Q
    ||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32925441 cagggaggctggttataagaaact-------------tgactctcttcatgtagtttatttaaagtgaaagaaagtgttgatgcttcatcgctatgtgaa 32925355  T
Q  200 cctcttggagttcattcggatgtatgtg 227  Q
    ||||||||||||||||||||||||||||    
T  32925354 cctcttggagttcattcggatgtatgtg 32925327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 135
Target Start/End: Original strand, 25109746 - 25109832
Alignment:
Q  49 caatatcttgcatgcaaaaatttatgcccttatgattgggattaagctttgcagggaggctggttataagaaactagtttgtttttt 135  Q
    |||||| ||||||||| ||||| |||||| |||||| ||||||||||||||  ||||| ||||||||||||| || |||||||||||    
T  25109746 caatattttgcatgcagaaattcatgcccgtatgatcgggattaagctttgttgggagactggttataagaagctggtttgtttttt 25109832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 77 - 134
Target Start/End: Original strand, 20496659 - 20496716
Alignment:
Q  77 cttatgattgggattaagctttgcagggaggctggttataagaaactagtttgttttt 134  Q
    |||||||||| ||||||||||||  | ||| |||||||||||||| | ||||||||||    
T  20496659 cttatgattgtgattaagctttgttgtgagactggttataagaaatttgtttgttttt 20496716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 154
Target Start/End: Complemental strand, 12975848 - 12975695
Alignment:
Q  1 attttgaggaaaaatt-caacttgccttctatggttgtgtggggttgaccaatatcttgcatgcaaaaatttatgcccttatgattgggattaagctttg 99  Q
    |||||||||||||||| ||| |||| ||||||||| |||||| |||| |||||||  |||||||| ||||| ||||||||||||||||||||||||||||    
T  12975848 attttgaggaaaaatttcaatttgctttctatggtagtgtggagttgtccaatattctgcatgcagaaattcatgcccttatgattgggattaagctttg 12975749  T
Q  100 cagggaggctggttataagaaactagtttgttttttctgactctcttcatgtagt 154  Q
      |||| |||||||||||||||||||||||| |||||||||||||||||||||||    
T  12975748 ttgggaagctggttataagaaactagtttgt-ttttctgactctcttcatgtagt 12975695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 7 - 224
Target Start/End: Original strand, 37502111 - 37502327
Alignment:
Q  7 aggaaaaattcaacttgccttctatggttgtgtggggttgaccaatatcttgcatgcaaaaatttatgcccttatgattgggattaagctttgcagggag 106  Q
    ||||||| ||||| |||| || |||||| ||| ||||||| ||||||| |||||||   ||||| ||||||||||||||| ||||||||||||  |||||    
T  37502111 aggaaaatttcaatttgcattttatggtagtgcggggttgcccaatattttgcatgttgaaattcatgcccttatgattgagattaagctttgatgggag 37502210  T
Q  107 gctggttataagaaactagtttgttttttctgactctcttcatgtagtttatttaaagtgaaagaaagtgttgatgcttcatcgctatttgaacctcttg 206  Q
    |||| |||||||||| | ||||| |||||||||||||||||||||||| ||||||  || |||| |||||| || |||||||| |||| |||||||||||    
T  37502211 gctgattataagaaattggtttg-tttttctgactctcttcatgtagtgtatttagtgtcaaaggaagtgtcgaggcttcatcactatgtgaacctcttg 37502309  T
Q  207 gagttcattcggatgtat 224  Q
     |  | ||||||||||||    
T  37502310 aaacttattcggatgtat 37502327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 33928971 - 33929124
Alignment:
Q  1 attttgaggaaaaatt-caacttgccttctatggttgtgtggggttgaccaatatcttgcatgcaaaaatttatgcccttatgattgggattaagctttg 99  Q
    ||||||||||||| || ||| |||||||||||||| || |||||||| |||||||  |||||||| ||||| | ||||||||||||||||||||||||||    
T  33928971 attttgaggaaaattttcaatttgccttctatggtagtttggggttgtccaatattctgcatgcagaaattcaagcccttatgattgggattaagctttg 33929070  T
Q  100 cagggaggctggttataagaaactagtttgttttttctgactctcttcatgtagt 154  Q
      |||| ||||||||||| ||||||||||| ||||||||| | ||||||||||||    
T  33929071 ttgggaagctggttataaaaaactagtttg-tttttctgattttcttcatgtagt 33929124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 49 - 224
Target Start/End: Original strand, 7504458 - 7504632
Alignment:
Q  49 caatatcttgcatgcaaaaatttatgcccttatgattgggattaagctttgcagggaggctggttataagaaactagtttgttttttctgactctcttca 148  Q
    |||||| |||| |||||||||| ||||||||||||||||||||||||||||  |||||||| ||||||||||| | |||||  |||||||||||||||||    
T  7504458 caatattttgcgtgcaaaaattcatgcccttatgattgggattaagctttgatgggaggctagttataagaaattggtttg-cttttctgactctcttca 7504556  T
Q  149 tgtagtttatttaaagtgaaagaaagtgttgatgcttcatcgctatttgaacctcttggagttcattcggatgtat 224  Q
    ||||||  |||||  || |||  |||||  ||  || || | |||| |||||||||||||||||||| ||||||||    
T  7504557 tgtagtgcatttagtgtcaaaagaagtgccgagactccaccactatgtgaacctcttggagttcatttggatgtat 7504632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 10622025 - 10622146
Alignment:
Q  15 ttcaacttgccttctat--ggttgtgtggggttgaccaatatcttgcatgcaaaaatttatgcccttatgattgggattaagctttgcagggaggctggt 112  Q
    ||||| |||||||||||  ||| ||||||  ||| ||||||| ||| || |||||||| |   |||||| ||||||||||||||||||  |||| ||| |    
T  10622025 ttcaatttgccttctatatggtagtgtggatttgtccaatattttgtatacaaaaattcacaaccttataattgggattaagctttgctaggagactgat 10622124  T
Q  113 tataagaaactagtttgttttt 134  Q
    |||||||||||  |||||||||    
T  10622125 tataagaaacttatttgttttt 10622146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 8 - 151
Target Start/End: Original strand, 3549008 - 3549150
Alignment:
Q  8 ggaaaaattcaacttgccttctatggttgtgtggggttgaccaatatcttgcatgcaaaaatttatgcccttatgattgggattaagctttgcagggagg 107  Q
    |||||| ||||| |||||||||||||| ||||  | ||| ||||||| ||||||||| ||||| |||  |||||||||||||||||||||||| ||||||    
T  3549008 ggaaaatttcaatttgccttctatggtagtgtttgattgtccaatattttgcatgcagaaattcatgttcttatgattgggattaagctttgctgggagg 3549107  T
Q  108 ctggttataagaaactagtttgttttttctgactctcttcatgt 151  Q
    || |||||||||||||||||||  ||||||||||||||||||||    
T  3549108 ctcgttataagaaactagtttg-cttttctgactctcttcatgt 3549150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 8231786 - 8231890
Alignment:
Q  9 gaaaaattcaacttgccttctatggttgtgtggggttgaccaatatcttgcatgcaaaaatttatgcccttatgattgggattaagctttgcagggaggc 108  Q
    ||||| ||||| |||| ||||||||| ||||||||||| ||||||| ||||||| | ||| | ||| || |||||||| |||||| |||||| || | ||    
T  8231786 gaaaatttcaatttgctttctatggtagtgtggggttgtccaatattttgcatgtagaaactcatgtccatatgattgagattaa-ctttgctggaaagc 8231884  T
Q  109 tggtta 114  Q
    ||||||    
T  8231885 tggtta 8231890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 177
Target Start/End: Original strand, 10406461 - 10406622
Alignment:
Q  15 ttcaacttgccttctatggttgtgtggggttgaccaatatcttgcatgcaaaaatttatgcccttatgattgggattaagctttgcagggaggctggtta 114  Q
    ||||| || ||||||||||  ||||  |||||| || ||| ||||||||| ||||| ||||| |||||||||||||||| |||||| | |||| ||||||    
T  10406461 ttcaattttccttctatggcagtgtcaggttgaacagtattttgcatgcataaattcatgcctttatgattgggattaaactttgctgagaggttggtta 10406560  T
Q  115 taagaaactagtttgttttttctgactctcttcatgtagtttatttaaagtgaaagaaagtgt 177  Q
    ||||||||| ||||| ||||||||||||||||||||||||  |||||  || |||||||||||    
T  10406561 taagaaactggtttg-tttttctgactctcttcatgtagtgcatttagtgtcaaagaaagtgt 10406622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 31 - 216
Target Start/End: Complemental strand, 43859970 - 43859786
Alignment:
Q  31 tggttgtgtggggttgaccaatatcttgcatgcaaaaatttatgcccttatgattgggattaagctttgcagggaggctggttataagaaactagtttgt 130  Q
    |||| ||||||| ||| ||||||| ||| ||||  |||||||  ||||||| |||||| ||||| ||||  |||| ||| ||||||||||||||||||||    
T  43859970 tggtagtgtgggtttgtccaatattttgaatgctgaaatttacacccttattattggggttaagttttgttgggaagctagttataagaaactagtttgt 43859871  T
Q  131 tttttctgactctcttcatgtagtttatttaaagtgaaagaaagtgttgatgcttcatcgctatttgaacctcttggagttcattc 216  Q
     |||||||||||  || |||||||   ||||| || |||| |||||| ||  ||||| ||||||   ||| |||||||| ||||||    
T  43859870 -ttttctgactcattttatgtagtgcgtttaatgtcaaaggaagtgtcgagacttcaccgctatgcaaacatcttggagctcattc 43859786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 224
Target Start/End: Complemental strand, 2522294 - 2522126
Alignment:
Q  56 ttgcatgcaaaaatttatgcccttatgattgggattaagctttgcagggaggctggttataagaaactagtttgttttttctgactctcttcatgtagtt 155  Q
    ||||||| | ||||| ||||||||||||||||  |||||||||||  | ||| ||||| ||||||| | ||||||||||   |||||||||||||||||     
T  2522294 ttgcatgtagaaattcatgcccttatgattggagttaagctttgcttgaaggatggttctaagaaattggtttgtttttgtcgactctcttcatgtagtg 2522195  T
Q  156 tatttaaagtgaaagaaagtgttgatgcttcatcgctatttgaacctcttggagttcattcggatgtat 224  Q
     ||||    | |||| |||||| || |||||| | || | ||| |||||||||  ||||||||||||||    
T  2522194 cattttgtatcaaaggaagtgtcgaggcttcaccactgtgtgatcctcttggaactcattcggatgtat 2522126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 154
Target Start/End: Original strand, 32331762 - 32331857
Alignment:
Q  57 tgcatgcaaaaatttatgcccttatgattgggattaagctttgcagggaggctggttataagaaactagtttgttttttctgactctcttcatgtagt 154  Q
    |||||||| ||||| ||||||||||||||||||||||||||||| |||| ||||||||||||||||| |||||  |||| | ||||||||||||||||    
T  32331762 tgcatgcagaaattcatgcccttatgattgggattaagctttgctgggaagctggttataagaaactggtttg--ttttattactctcttcatgtagt 32331857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 107 - 216
Target Start/End: Complemental strand, 42346892 - 42346783
Alignment:
Q  107 gctggttataagaaactagtttgttttttctgactctcttcatgtagtttatttaaagtgaaagaaagtgttgatgcttcatcgctatttgaacctcttg 206  Q
    |||||||||||||||||  ||||||||||| ||||||||| ||||  |  |||||  || |||| ||||| ||| |||||| ||||||  | ||||||||    
T  42346892 gctggttataagaaactgatttgttttttcggactctctttatgtgatgcatttagtgtcaaaggaagtgatgaggcttcaccgctatgcggacctcttg 42346793  T
Q  207 gagttcattc 216  Q
    ||| ||||||    
T  42346792 gagctcattc 42346783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 187
Target Start/End: Original strand, 36284522 - 36284688
Alignment:
Q  15 ttcaacttgccttctatggttgtgtggggttgaccaatatcttgcatgcaaaaatttatgcccttatgattgggattaagctttgcagggaggctggtta 114  Q
    ||||| |||||||||||| | ||||||| ||| ||||||| ||||||| ||||||  ||| ||||||||||  |||||||||||||  | | | || |||    
T  36284522 ttcaatttgccttctatgatggtgtgggtttgtccaatattttgcatgtaaaaatccatg-ccttatgattaagattaagctttgctagaatgatgatta 36284620  T
Q  115 taagaaactagtttgttttttctgactctcttcatgtagtttatttaaagtgaaagaaagtgttgatgcttca 187  Q
    ||||||||     |||||||| | |||||||| ||||||| ||||||  || |||| |||||| |||||||||    
T  36284621 taagaaac-----tgtttttttttactctctttatgtagtgtatttagtgtcaaaggaagtgtcgatgcttca 36284688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 221
Target Start/End: Complemental strand, 18702796 - 18702675
Alignment:
Q  96 tttgcagggaggctggttataagaaactagtttgttttttctgactctcttcatgtagtttatttaaagtgaaagaaagtgttgatgcttcatcgctatt 195  Q
    ||||| |||||||||||| |||||||||    ||||| |||||||||||||||||||||  |||||  || |||| ||||||  | |||||||| ||||     
T  18702796 tttgctgggaggctggttgtaagaaact----tgtttattctgactctcttcatgtagtgcatttagtgtcaaaggaagtgtcaaggcttcatcactatg 18702701  T
Q  196 tgaacctcttggagttcattcggatg 221  Q
      |||||||||||| |||||| ||||    
T  18702700 caaacctcttggagctcattcagatg 18702675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 18702877 - 18702795
Alignment:
Q  72 atgcccttatgattgggattaagctttgcagggaggctggttataagaaactagtttgttttttctgactctcttcatgtagttt 156  Q
    |||| |||||||||| |||||||||||||  |||||||| || | ||||| |  |||| |||||||||| |||||||||||||||    
T  18702877 atgctcttatgattgagattaagctttgctaggaggctgattgtgagaaaatgatttg-tttttctgac-ctcttcatgtagttt 18702795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University