View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10186_high_7 (Length: 375)
Name: NF10186_high_7
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10186_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 25867988 - 25867638
Alignment:
| Q |
17 |
acttatgacaacaaattctagtagatttatccctgttatgcatggcttagataatttttgaatcaaagaatgtagtattcgttttacacttttacttatg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25867988 |
acttatgacaacaaattctagtagatttatccctgttatgcatgacttagataatttttgaatcaaagaatgtagtattcgttttacacttttacttatg |
25867889 |
T |
|
| Q |
117 |
gacaaaacttttgttgattttcttagatgctttttgtgctgttcttcacttacaatattcataactatcatgctttcctcggattcataannnnnnnaaa |
216 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
25867888 |
gacaaaacttttgttgattttcttagatgctttttatgctgttcttcacttacaatattcataactatcctgctttcctcggattcataatttttttaaa |
25867789 |
T |
|
| Q |
217 |
gtttattataaccac-nnnnnnntgta-nnnnnnnnnccaaaataattgatctttttccaacaaaaatttgtctcaccttttagattttcaacaaaacat |
314 |
Q |
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|||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25867788 |
gtttgttataaccacaaaaaaaatgtatttctttgttccaaaataattgatctttttccaacaaaaatttgtctcaccttttagattttcaacaaaacat |
25867689 |
T |
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| Q |
315 |
tagttacnnnnnnnncttcaattgtactatctaattaatattgttttcatc |
365 |
Q |
| |
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||||||| |||||||||||| ||||||||||||||||||||||| |
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| T |
25867688 |
tagttacttttttttcttcaattgtaccatctaattaatattgttttcatc |
25867638 |
T |
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