View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10186_high_9 (Length: 345)
Name: NF10186_high_9
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10186_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 89; Significance: 7e-43; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 19 - 111
Target Start/End: Original strand, 46057681 - 46057773
Alignment:
| Q |
19 |
actgtacattcgtgtgcttaaaccgatcaatggctttctgtcacagactcaacagcttcaccatttctgcgtttaaacctcaaacctccaatg |
111 |
Q |
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| T |
46057681 |
actgtacattcgtgtgcttaaacggatcaatggctttctgtcacagactcaacagcttcaccatttctgcgtttaaacctcaaacctccaatg |
46057773 |
T |
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Target: chr1; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 184 - 267
Target Start/End: Original strand, 46057846 - 46057929
Alignment:
| Q |
184 |
ttaaagtccgctttaattcaatcatcagagccacttcttcatcctcttctcccacaaccattgctgaacctcaaggcattaagg |
267 |
Q |
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| T |
46057846 |
ttaaagtccgctttaattcaatcatcagagccacttcttcatcctcttctcccacaaccattgctgaacctcaaggcattaagg |
46057929 |
T |
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