View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10186_low_10 (Length: 402)

Name: NF10186_low_10
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10186_low_10
NF10186_low_10
[»] chr4 (19 HSPs)
chr4 (140-380)||(40692027-40692269)
chr4 (140-380)||(55611435-55611677)
chr4 (147-380)||(45658582-45658817)
chr4 (140-380)||(47604604-47604847)
chr4 (144-380)||(44108792-44109030)
chr4 (161-380)||(38989734-38989955)
chr4 (164-380)||(52918526-52918744)
chr4 (164-382)||(40761430-40761650)
chr4 (140-373)||(53270234-53270469)
chr4 (261-380)||(47984855-47984974)
chr4 (261-380)||(53512371-53512490)
chr4 (302-373)||(11648544-11648615)
chr4 (300-375)||(4352637-4352712)
chr4 (144-212)||(11648697-11648765)
chr4 (294-355)||(34952976-34953037)
chr4 (140-200)||(12692836-12692896)
chr4 (17-48)||(44109128-44109159)
chr4 (17-48)||(52918415-52918446)
chr4 (17-46)||(40691904-40691933)
[»] chr3 (25 HSPs)
chr3 (140-380)||(16483699-16483941)
chr3 (144-374)||(48063034-48063266)
chr3 (140-380)||(47373816-47374058)
chr3 (144-374)||(21449711-21449943)
chr3 (144-380)||(49326369-49326607)
chr3 (144-371)||(44206810-44207039)
chr3 (140-382)||(21978937-21979181)
chr3 (140-382)||(22001368-22001612)
chr3 (140-374)||(8485474-8485714)
chr3 (240-380)||(30389761-30389901)
chr3 (189-380)||(41973669-41973862)
chr3 (144-235)||(18877019-18877110)
chr3 (167-326)||(49439902-49440063)
chr3 (149-365)||(9127873-9128091)
chr3 (149-365)||(9135980-9136198)
chr3 (144-317)||(9331432-9331607)
chr3 (296-355)||(23334081-23334140)
chr3 (294-371)||(10493851-10493928)
chr3 (292-355)||(12718482-12718546)
chr3 (140-212)||(23333942-23334014)
chr3 (17-48)||(21449582-21449613)
chr3 (17-48)||(21978814-21978845)
chr3 (17-48)||(22001245-22001276)
chr3 (17-48)||(41973554-41973585)
chr3 (17-48)||(49326240-49326271)
[»] chr1 (23 HSPs)
chr1 (140-380)||(39599054-39599296)
chr1 (144-371)||(5748963-5749192)
chr1 (144-352)||(10222297-10222507)
chr1 (144-380)||(18277358-18277595)
chr1 (144-371)||(30517439-30517668)
chr1 (153-375)||(3474328-3474552)
chr1 (144-374)||(4852190-4852420)
chr1 (140-384)||(7563606-7563852)
chr1 (240-374)||(14271178-14271312)
chr1 (285-378)||(10311794-10311887)
chr1 (290-373)||(6604951-6605034)
chr1 (148-239)||(22334515-22334606)
chr1 (144-219)||(17384963-17385038)
chr1 (292-380)||(12524114-12524202)
chr1 (279-371)||(41367700-41367792)
chr1 (144-187)||(29251689-29251732)
chr1 (144-186)||(10311751-10311793)
chr1 (17-48)||(4852538-4852569)
chr1 (17-48)||(18277693-18277724)
chr1 (17-48)||(22334382-22334413)
chr1 (290-328)||(21534950-21534988)
chr1 (317-371)||(30516756-30516810)
chr1 (17-45)||(39599391-39599419)
[»] chr7 (24 HSPs)
chr7 (140-380)||(109532-109774)
chr7 (140-380)||(15031652-15031894)
chr7 (144-380)||(35584116-35584354)
chr7 (144-380)||(43748256-43748494)
chr7 (144-380)||(7254447-7254684)
chr7 (144-380)||(26792836-26793065)
chr7 (165-380)||(29331376-29331593)
chr7 (144-344)||(33850940-33851142)
chr7 (240-380)||(45490934-45491074)
chr7 (277-375)||(38256657-38256755)
chr7 (277-375)||(38264232-38264330)
chr7 (277-377)||(37999515-37999615)
chr7 (140-239)||(37999613-37999711)
chr7 (140-239)||(38256559-38256659)
chr7 (140-239)||(38264134-38264234)
chr7 (140-200)||(19516391-19516451)
chr7 (303-355)||(19647849-19647901)
chr7 (144-180)||(22203722-22203758)
chr7 (292-350)||(1852873-1852931)
chr7 (17-48)||(15031529-15031560)
chr7 (17-48)||(22203596-22203627)
chr7 (341-380)||(33849618-33849657)
chr7 (140-210)||(1853000-1853070)
chr7 (146-200)||(31325172-31325226)
[»] chr5 (9 HSPs)
chr5 (144-380)||(5342922-5343160)
chr5 (144-374)||(24854977-24855209)
chr5 (144-380)||(32747689-32747927)
chr5 (164-380)||(6431485-6431703)
chr5 (147-373)||(41615346-41615574)
chr5 (171-372)||(31471133-31471321)
chr5 (292-328)||(23248355-23248391)
chr5 (140-180)||(28335401-28335441)
chr5 (19-48)||(31471094-31471123)
[»] chr2 (11 HSPs)
chr2 (143-380)||(15112397-15112636)
chr2 (144-380)||(5463436-5463674)
chr2 (144-373)||(34949316-34949538)
chr2 (292-380)||(41962509-41962597)
chr2 (144-373)||(5937450-5937672)
chr2 (290-373)||(45536418-45536501)
chr2 (279-371)||(21484384-21484476)
chr2 (144-200)||(18964355-18964411)
chr2 (140-210)||(21484262-21484332)
chr2 (144-194)||(37126992-37127042)
chr2 (278-371)||(18964201-18964294)
[»] chr6 (8 HSPs)
chr6 (144-373)||(13037736-13037967)
chr6 (278-355)||(3513849-3513926)
chr6 (144-177)||(34949922-34949955)
chr6 (18-48)||(13038088-13038118)
chr6 (278-355)||(12304454-12304531)
chr6 (140-200)||(20819541-20819601)
chr6 (144-200)||(25136655-25136711)
chr6 (292-328)||(25137834-25137870)
[»] chr8 (5 HSPs)
chr8 (144-380)||(24831596-24831834)
chr8 (144-375)||(10788-11013)
chr8 (302-373)||(41835533-41835604)
chr8 (292-371)||(11457716-11457795)
chr8 (144-212)||(41835686-41835754)
[»] scaffold0168 (1 HSPs)
scaffold0168 (203-375)||(16433-16607)
[»] scaffold0064 (1 HSPs)
scaffold0064 (292-355)||(62291-62354)
[»] scaffold0054 (2 HSPs)
scaffold0054 (279-371)||(18161-18253)
scaffold0054 (140-212)||(18039-18111)
[»] scaffold0001 (2 HSPs)
scaffold0001 (300-371)||(426514-426585)
scaffold0001 (140-212)||(426326-426398)
[»] scaffold0127 (1 HSPs)
scaffold0127 (279-371)||(37193-37285)
[»] scaffold0007 (1 HSPs)
scaffold0007 (279-371)||(250726-250818)
[»] scaffold0210 (1 HSPs)
scaffold0210 (292-355)||(7371-7434)


Alignment Details
Target: chr4 (Bit Score: 184; Significance: 2e-99; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 140 - 380
Target Start/End: Original strand, 40692027 - 40692269
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||| | ||| |||||||||||||||||| |||||||| ||||||||||||||||    
T  40692027 aataatatatattatttaaactttcattatgttttaatttacgtcaaaagtattcatttaatcgataaaataaccaaagatatacttttcggattacgaa 40692126  T
Q  240 --ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagttta 337  Q
      ||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  40692127 atccggattgacctagggcgtaagtgtgttccggaaaacgaaattcggaatacctcagcataggattcttttgtatggaccaaattgcaccaggagttta 40692226  T
Q  338 tgtggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    || ||||||||||||||||||||||||||||||||||| ||||    
T  40692227 tgcggtccacaacatccaaggacctctataaatacatcctctc 40692269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 140 - 380
Target Start/End: Original strand, 55611435 - 55611677
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||||    
T  55611435 aataatatatattatttaaattttcattatgttttaatttacgtcaaaaatgttcgtttaatcgataaaataatcaaagataacctttttggattacgaa 55611534  T
Q  240 --ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagttta 337  Q
      ||||||||||||||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  55611535 atccggattgacctagggcgtaagtgtgttccagaaaacgaaatccagaatacctcagcataggattcttttgtatggaccacattgcaccatgagttta 55611634  T
Q  338 tgtggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    ||| |||||||||||||||||||||||||||||||||| ||||    
T  55611635 tgttgtccacaacatccaaggacctctataaatacatcctctc 55611677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 147 - 380
Target Start/End: Original strand, 45658582 - 45658817
Alignment:
Q  147 tatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--ccgga 244  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||| |||||||| |||||||||||| |||  | |||    
T  45658582 tatattatttaaactttcattatgttttaatttacgtcaaaaatgttcatttaattgataaaataaccaaagatatgcttttcggattatgaaatctgga 45658681  T
Q  245 ttgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtc 344  Q
    |||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||    
T  45658682 ttgacctagggcgtaagtgtgttccggaaaacgaaatctggaatacctcaacataggattcttttgtatggaccacattgcaccaagagtttatgtggtc 45658781  T
Q  345 cacaacatccaaggacctctataaatacatcatctc 380  Q
     |||||||||||||||||||||||||||||| ||||    
T  45658782 gacaacatccaaggacctctataaatacatcctctc 45658817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 140 - 380
Target Start/End: Complemental strand, 47604847 - 47604604
Alignment:
Q  140 aataatata-tattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacga 238  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||| ||||  || |||||||||||    
T  47604847 aataatataatattatttaaactttcattatgttttaatttacgtcaaatatgttcatttaatcgataaaataaccaaatatatatttctcggattacga 47604748  T
Q  239 a--ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagttt 336  Q
    |  ||||||||||||||||||||||||||||| | ||||  |||| |||||||||| |||||||||||||||||||||||| | ||||||||||||||||    
T  47604747 aatccggattgacctagggcgtaagtgtgttctggaaaacaaaattcggaataccttagcataggattcttttgtatggactaaattgcaccaggagttt 47604648  T
Q  337 atgtggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||||||||||||| |||||||||||||||||||||||| ||||    
T  47604647 atgtggtccacaacttccaaggacctctataaatacatcctctc 47604604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 144 - 380
Target Start/End: Complemental strand, 44109030 - 44108792
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||| ||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |||||||| |||||||||||| |||  ||    
T  44109030 atatatgttatttaaactttcattatgttttaatttacgtcaaatatgttcatttattcgataaaataaccaaagatatgcttttcggattatgaaatcc 44108931  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    | |||  ||||||||||| ||| |||||| |||| |||||| ||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||    
T  44108930 gaatttgcctagggcgtatgtgggttccggaaaacgaaatcaggaataccttagcatatgattcttttgtatggaccacattgcaccaagagtttatgtg 44108831  T
Q  342 gtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||||||||||||||||||||||||||||||||||||||    
T  44108830 gtccacaacatccaaggacctctataaatacatcatctc 44108792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 161 - 380
Target Start/End: Original strand, 38989734 - 38989955
Alignment:
Q  161 tttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--ccggattgacctagggcgt 258  Q
    |||||||||||||| |||||| ||||| |||||| |||| ||||||||||||| ||||||||  |||||||||||||||  || ||||  ||||||||||    
T  38989734 tttcattatgtttttatttacgtcaaatatgttcatttattcgataaaataaccaaagatatgattttcggattacgaaatccagattttcctagggcgt 38989833  T
Q  259 aagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaagg 358  Q
    | |||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38989834 atgtgtgttccggaaaacaaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaatatccaagg 38989933  T
Q  359 acctctataaatacatcatctc 380  Q
    ||||||||||||||||||||||    
T  38989934 acctctataaatacatcatctc 38989955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 164 - 380
Target Start/End: Original strand, 52918526 - 52918744
Alignment:
Q  164 cattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--ccggattgacctagggcgtaag 261  Q
    |||||||||||| ||||| ||||| |||||| |||| | ||||||||||| ||||||||  |||||||||||||||  | |||||  ||||||||||| |    
T  52918526 cattatgttttattttacatcaaatatgttcatttatttgataaaataaccaaagatatgattttcggattacgaaatctggatttgcctagggcgtatg 52918625  T
Q  262 tgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacc 361  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52918626 tgtgttccggaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacc 52918725  T
Q  362 tctataaatacatcatctc 380  Q
    | |||||||||||| ||||    
T  52918726 tatataaatacatcctctc 52918744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 164 - 382
Target Start/End: Original strand, 40761430 - 40761650
Alignment:
Q  164 cattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--ccggattgacctagggcgtaag 261  Q
    |||||||||||||||||| ||||| |||||| |||| ||||||||||||| ||||||||  |||||| ||||||||  |||||||  ||||||||||| |    
T  40761430 cattatgttttaatttacgtcaaatatgttcatttattcgataaaataaccaaagatatgattttcgaattacgaaatccggatttgcctagggcgtatg 40761529  T
Q  262 tgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacc 361  Q
    ||||||| | |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||||||    
T  40761530 tgtgttctggaaaacgaaatccggaatacctcagcataggattcttttgtacggaccacattgcaccaggagtttatgcgttccacaacatccaaggacc 40761629  T
Q  362 tctataaatacatcatctctg 382  Q
    |||||||||||||| ||||||    
T  40761630 tctataaatacatcttctctg 40761650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 140 - 373
Target Start/End: Complemental strand, 53270469 - 53270234
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| | || |||| |  | ||||||   ||    
T  53270469 aataatatatattatttaaactttcattatgttttaatttacgtcaaaaatgttcatttaatcgataaaataaatgaatatatgcagtccggattgtaaa 53270370  T
Q  240 --ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagttta 337  Q
      || |||| || |||||||||||||| |||||||   || |  ||||||| | |||||||||||| ||||||||||||||||||||||||| |||||||    
T  53270369 ttccagattcacatagggcgtaagtgtattccgaattttgtataccggaatgcttcagcataggatccttttgtatggaccacattgcaccaagagttta 53270270  T
Q  338 tgtggtccacaacatccaaggacctctataaataca 373  Q
    |||| |||||||||||||||||||||||||||||||    
T  53270269 tgtgatccacaacatccaaggacctctataaataca 53270234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 261 - 380
Target Start/End: Original strand, 47984855 - 47984974
Alignment:
Q  261 gtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggac 360  Q
    |||||||||| |||| |||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  47984855 gtgtgttccggaaaacgaaatctggaatacctcagcataggattcttttgtatgcaccacattgcaccaagagtttatgtggtccacaacatccaaggac 47984954  T
Q  361 ctctataaatacatcatctc 380  Q
    ||||||||||||| ||||||    
T  47984955 ctctataaatacagcatctc 47984974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 261 - 380
Target Start/End: Complemental strand, 53512490 - 53512371
Alignment:
Q  261 gtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggac 360  Q
    |||||||||| |||| ||||| || ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  53512490 gtgtgttccggaaaacgaaattcgaaatacctcagcataggattcttttgtatgaaccacattgcaccaagagtttatgtggtccacaacatccaaggac 53512391  T
Q  361 ctctataaatacatcatctc 380  Q
    ||||||||||||||| ||||    
T  53512390 ctctataaatacatcctctc 53512371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 11648615 - 11648544
Alignment:
Q  302 attcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaataca 373  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  11648615 attcttttgtatggaccacattgcaccaaaagtttatgtggtccacaacatccaaggacctctataaataca 11648544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 4352712 - 4352637
Alignment:
Q  300 ggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaatacatc 375  Q
    |||||||||| ||||  ||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||    
T  4352712 ggattcttttatatgtcccacattgcaccaagagtttatatggtccacaacatccaaggacctctataaatacatc 4352637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 11648765 - 11648697
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataa 212  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||| |||| |  |||||||||    
T  11648765 atatatattatttaaactttcattatgttttaatttatgtcaaagatgttcatttattatataaaataa 11648697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 294 - 355
Target Start/End: Original strand, 34952976 - 34953037
Alignment:
Q  294 agcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatcca 355  Q
    |||||| ||||||||||||||| ||||||||||||   | ||||||||||||||||| ||||    
T  34952976 agcataagattcttttgtatggtccacattgcaccgataatttatgtggtccacaacgtcca 34953037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 12692836 - 12692896
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaa 200  Q
    |||||||||||||||||||| ||||||||||||| | ||||| | ||| |||||| |||||    
T  12692836 aataatatatattatttaaattttcattatgtttaattttacgtaaaagatgttcatttaa 12692896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 44109159 - 44109128
Alignment:
Q  17 aggaagaagttagtttagatgatccgtgataa 48  Q
    ||||||||||||||||||||||||||||||||    
T  44109159 aggaagaagttagtttagatgatccgtgataa 44109128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 52918415 - 52918446
Alignment:
Q  17 aggaagaagttagtttagatgatccgtgataa 48  Q
    ||||||||||||||||||||||||||||||||    
T  52918415 aggaagaagttagtttagatgatccgtgataa 52918446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 40691904 - 40691933
Alignment:
Q  17 aggaagaagttagtttagatgatccgtgat 46  Q
    ||||||||||||||||||||||||||||||    
T  40691904 aggaagaagttagtttagatgatccgtgat 40691933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 180; Significance: 4e-97; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 140 - 380
Target Start/End: Complemental strand, 16483941 - 16483699
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||| |||||| ||||||||||    
T  16483941 aataatatatattatttaaattttcattatgttttaatttacgtcaaaaatgttcgtttaatcgataaaataatcaaagataacctttttggattacgaa 16483842  T
Q  240 --ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagttta 337  Q
      ||||||||||||||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  16483841 atccggattgacctagggcgtaagtgtgttccagaaaacgaaatccagaatacctcagcataggattcttttgtatggaccacattgcaccatgagttta 16483742  T
Q  338 tgtggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    ||| |||||||||||||||||||||||||||||||||| ||||    
T  16483741 tgttgtccacaacatccaaggacctctataaatacatcctctc 16483699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 144 - 374
Target Start/End: Complemental strand, 48063266 - 48063034
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| ||||||||  |||||||||||||||  ||    
T  48063266 atatatattatttaaactttcattatgttttaatttacgtcaaatatgttcatttattcgataaaataaccaaagatatgattttcggattacgaaatcc 48063167  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    |||||  ||||||||||| |||||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  48063166 ggatttgcctagggcgtatgtgtgttccagaaaacgaaatccagaatacctcagcataggattcttttgtatggaccacattgcaccaagagtttatgtg 48063067  T
Q  342 gtccacaacatccaaggacctctataaatacat 374  Q
    |||||| ||||||||||||||||||||||||||    
T  48063066 gtccacgacatccaaggacctctataaatacat 48063034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 140 - 380
Target Start/End: Original strand, 47373816 - 47374058
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    ||||||||||||||||||||||||||||| |||||||||||| | ||| |||||| |||| ||||||||||||| |||||||| ||||||||||||||||    
T  47373816 aataatatatattatttaaactttcattacgttttaatttacataaaatatgttcatttattcgataaaataaccaaagatatgcttttcggattacgaa 47373915  T
Q  240 --ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagttta 337  Q
      |||||||  ||||||||||| |||||||||| |||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  47373916 atccggatttgcctagggcgtatgtgtgttccggaaatcgaaatccggaatacgtcagcataggattcttttgtatggaccacattgcaccaggagttta 47374015  T
Q  338 tgtggtccacaacatccaaggacctctataaatacatcatctc 380  Q
     ||| ||||||| ||||||||||||||||||||||||| ||||    
T  47374016 cgtgatccacaaaatccaaggacctctataaatacatcctctc 47374058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 144 - 374
Target Start/End: Original strand, 21449711 - 21449943
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaac--c 241  Q
    |||||||||||||||||||||||||||||||||||||| | ||| |||||| |||| ||||||||||||| |||||||| ||||||||||||||||   |    
T  21449711 atatatattatttaaactttcattatgttttaatttacgttaaatatgttcatttattcgataaaataaccaaagatatgcttttcggattacgaaattc 21449810  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    | |||  ||||||||||| |||||||| | |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||    
T  21449811 gaatttgcctagggcgtatgtgtgttctggaaaacgaaatccggaatacctcagcatatgattcttttgtatggaccacattgcaccaagagtctatgtg 21449910  T
Q  342 gtccacaacatccaaggacctctataaatacat 374  Q
    |||||||||||||||||||||||||||||||||    
T  21449911 gtccacaacatccaaggacctctataaatacat 21449943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 144 - 380
Target Start/End: Original strand, 49326369 - 49326607
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||||||||||||||||||||||||||||||||| ||||| || ||| |||| ||||||||||||| |||||||| ||||||||||||| ||  ||    
T  49326369 atatatattatttaaactttcattatgttttaatttacgtcaaatatattcatttattcgataaaataaccaaagatatgcttttcggattaccaaatcc 49326468  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    ||| |  ||||||||||| |||||||| | |||| ||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  49326469 ggacttgcctagggcgtatgtgtgttctggaaaacgaaatctagaatacctcagcataggattcttttgtatggaccacattgcaccaagagtttatgtg 49326568  T
Q  342 gtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||| ||||||||||||||||||||||||||||| ||||    
T  49326569 gtccgcaacatccaaggacctctataaatacatcctctc 49326607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 144 - 371
Target Start/End: Original strand, 44206810 - 44207039
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| ||||| ||  |||||||||||| ||  ||    
T  44206810 atatatattatttaaactttcattatgttttaatttacgtcaaatatgttcatttattcgataaaataaccaaagaaatgattttcggattacaaaatcc 44206909  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    |||||  ||||||||||| ||||||||||||||| ||||||| |||||||||| |||||||||||||| ||||||||||||||||||| |||||||||||    
T  44206910 ggatttgcctagggcgtatgtgtgttccgaaaaacgaaatccagaatacctcatcataggattcttttttatggaccacattgcaccaagagtttatgtg 44207009  T
Q  342 gtccacaacatccaaggacctctataaata 371  Q
    |||| |||||||||||||||||||||||||    
T  44207010 gtcctcaacatccaaggacctctataaata 44207039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 140 - 382
Target Start/End: Original strand, 21978937 - 21979181
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | |||||||||||||||  |||||||| |||||||||||| | |    
T  21978937 aataatatatattatttaaactttcatgatgttttaatttacgtcaaaaatgttcatctaatcgataaaataaacaaagatatgcttttcggattatgga 21979036  T
Q  240 c--cggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagttta 337  Q
       |||||| ||||| ||||||||||||||||| ||||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||| || ||||    
T  21979037 attcggattcacctaaggcgtaagtgtgttccggaaaacaaaatccggaatacctcagcatatgattcttttgtatggaccatattgcaccaagatttta 21979136  T
Q  338 tgtggtccacaacatccaaggacctctataaatacatcatctctg 382  Q
    |||||||||||||| |||| |||||||||||||||| | ||||||    
T  21979137 tgtggtccacaacagccaatgacctctataaatacaccctctctg 21979181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 140 - 382
Target Start/End: Original strand, 22001368 - 22001612
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||||||| | |||||||||||||||  |||||||| |||||||||||| | |    
T  22001368 aataatatatattatttaaactttcatgatgttttaatttacgtcaaaaatgttcatctaatcgataaaataaacaaagatatgcttttcggattatgga 22001467  T
Q  240 c--cggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagttta 337  Q
       |||||| ||||| ||||||||||||||||| ||||  |||||||||||||||||||||| ||||||||||||||||||| ||||||||| || ||||    
T  22001468 attcggattcacctaaggcgtaagtgtgttccggaaaacaaaatccggaatacctcagcatatgattcttttgtatggaccatattgcaccaagatttta 22001567  T
Q  338 tgtggtccacaacatccaaggacctctataaatacatcatctctg 382  Q
    |||||||||||||| |||| |||||||||||||||| | ||||||    
T  22001568 tgtggtccacaacagccaatgacctctataaatacaccctctctg 22001612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 140 - 374
Target Start/End: Original strand, 8485474 - 8485714
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| |||||| |||| | ||||||||||| |||||||| ||||||||||||||||    
T  8485474 aataatatatattatttaaactttcattatgttttaatttacgtgaaatatgttcatttattagataaaataacgaaagatatgcttttcggattacgaa 8485573  T
Q  240 --ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagt--- 334  Q
      ||||| |   |||||||||| |||||||||| |||| |||||||||||||||| ||||||  |||||||||||||||||||||||||||| ||||       
T  8485574 atccggaattgtctagggcgtatgtgtgttccggaaaacgaaatccggaataccttagcatataattcttttgtatggaccacattgcaccaagagttta 8485673  T
Q  335 -ttatgtggtccacaacatccaaggacctctataaatacat 374  Q
     |||||||||||||||||||||||||| | |||||||||||    
T  8485674 attatgtggtccacaacatccaaggacatatataaatacat 8485714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 240 - 380
Target Start/End: Complemental strand, 30389901 - 30389761
Alignment:
Q  240 ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatg 339  Q
    |||||||  ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  30389901 ccggatttgcctagggcgtatgtgtgttccgaaaaacgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaagagtttatg 30389802  T
Q  340 tggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    ||||||||||||||||| |||||||||||||||||||||||    
T  30389801 tggtccacaacatccaatgacctctataaatacatcatctc 30389761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 189 - 380
Target Start/End: Original strand, 41973669 - 41973862
Alignment:
Q  189 atgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccgga 286  Q
    |||||| |||| ||||||||||||| ||||||||  |||||||||||||||  |||||||  ||||||||||| |||||||||| |||| |||||| | |    
T  41973669 atgttcatttattcgataaaataaccaaagatatgattttcggattacgaaatccggatttgcctagggcgtatgtgtgttccggaaaacgaaatctgaa 41973768  T
Q  287 atacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||||||| |||| ||||||||||||||||||||| |||||||  ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  41973769 atacctcaacataagattcttttgtatggaccacactgcaccataagtttatgtggtccacaacatccaaggacctttataaatacatcttctc 41973862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 144 - 235
Target Start/End: Complemental strand, 18877110 - 18877019
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggatta 235  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||||||||| |||||||| ||||||||||||    
T  18877110 atatatattatttaaactttcattatgttttaatttacatcaaaaatgttcatctaatcgataaaataaccaaagatatgcttttcggatta 18877019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 167 - 326
Target Start/End: Original strand, 49439902 - 49440063
Alignment:
Q  167 tatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--ccggattgacctagggcgtaagtgt 264  Q
    ||||||||||||||| | ||| |||||| |||| ||||||||||||| |||||| |  ||| | ||||| |||  || ||||  ||||||||||| ||||    
T  49439902 tatgttttaatttacgttaaatatgttcatttattcgataaaataaccaaagatgtgatttccagattaggaaatccagatttgcctagggcgtatgtgt 49440001  T
Q  265 gttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgca 326  Q
    |||||| |||| |||||| |||||||||||||||||||||||||| ||||||||||||||||    
T  49440002 gttccggaaaacgaaatctggaatacctcagcataggattcttttatatggaccacattgca 49440063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 149 - 365
Target Start/End: Complemental strand, 9128091 - 9127873
Alignment:
Q  149 tattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaac--cggatt 246  Q
    |||||||||||||||||||| |||||||||||| ||||| |||||| |||||||| |||||||||| || | || |  | || ||||   |   | ||||    
T  9128091 tattatttaaactttcattacgttttaatttacgtcaaagatgttcatttaatcgttaaaataactgaataaatgcagtccgaattatatatttctgatt 9127992  T
Q  247 gacctagggcgtaagtgtgttccgaaaaatgaaat-ccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtcc 345  Q
    ||| |||||||||||||| || | | || | |||| ||||||  | |||||||||||| ||||||| ||||||| ||||||||| ||||||||||| |||    
T  9127991 gacatagggcgtaagtgtttttc-agaattcaaattccggaaagcatcagcataggatccttttgtgtggaccatattgcaccaagagtttatgtgatcc 9127893  T
Q  346 acaacatccaaggacctcta 365  Q
    ||||||| ||||||||||||    
T  9127892 acaacattcaaggacctcta 9127873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 149 - 365
Target Start/End: Complemental strand, 9136198 - 9135980
Alignment:
Q  149 tattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaac--cggatt 246  Q
    |||||||||||||||||||| |||||||||||| ||||| |||||| |||||||| |||||||||| || | || |  | || ||||   |   | ||||    
T  9136198 tattatttaaactttcattacgttttaatttacgtcaaagatgttcatttaatcgttaaaataactgaataaatgcagtccgaattatatatttctgatt 9136099  T
Q  247 gacctagggcgtaagtgtgttccgaaaaatgaaat-ccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtcc 345  Q
    ||| |||||||||||||| || | | || | |||| ||||||  | |||||||||||| ||||||| ||||||| ||||||||| ||||||||||| |||    
T  9136098 gacatagggcgtaagtgtttttc-agaattcaaattccggaaagcatcagcataggatccttttgtgtggaccatattgcaccaagagtttatgtgatcc 9136000  T
Q  346 acaacatccaaggacctcta 365  Q
    ||||||| ||||||||||||    
T  9135999 acaacattcaaggacctcta 9135980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 144 - 317
Target Start/End: Complemental strand, 9331607 - 9331432
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    ||||||||||||||||||||| ||||||| |||||||| | ||| |||||| |||||||||||||||||| ||| |||| | || | ||||| |||  ||    
T  9331607 atatatattatttaaactttcgttatgttctaatttacgttaaagatgttcatttaatcgataaaataaccaaatatatgcattccagattatgaaatcc 9331508  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggac 317  Q
    ||||| || |||||||||||||| || |  |  || |||| |  |||||  |||||||||||||||||||||||||    
T  9331507 ggattcacatagggcgtaagtgtatttcatattattaaatacataatactccagcataggattcttttgtatggac 9331432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 296 - 355
Target Start/End: Original strand, 23334081 - 23334140
Alignment:
Q  296 cataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatcca 355  Q
    |||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||||    
T  23334081 cataggattcttttgtatggaccacattgcaccgatagtttatgtggtccacaacgtcca 23334140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 294 - 371
Target Start/End: Original strand, 10493851 - 10493928
Alignment:
Q  294 agcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaata 371  Q
    |||||| ||||||||| |||||| |||| ||||||   ||||||||||||||||||| ||||  ||||||||||||||    
T  10493851 agcatatgattcttttatatggatcacaatgcaccgacagtttatgtggtccacaacgtccatagacctctataaata 10493928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 355
Target Start/End: Complemental strand, 12718546 - 12718482
Alignment:
Q  292 tcagcataggattcttt-tgtatggaccacattgcaccaggagtttatgtggtccacaacatcca 355  Q
    ||||||||||||||||| ||||||||||||| |||||||  ||||||||| ||||||||| ||||    
T  12718546 tcagcataggattctttgtgtatggaccacactgcaccaacagtttatgtcgtccacaacgtcca 12718482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 23333942 - 23334014
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataa 212  Q
    ||||||||||||||| |||| ||||||||||| ||| |||||  ||||||||||| ||||  || ||||||||    
T  23333942 aataatatatattatctaaattttcattatgtgttactttacgccaaaaatgttcatttacacgctaaaataa 23334014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 21449582 - 21449613
Alignment:
Q  17 aggaagaagttagtttagatgatccgtgataa 48  Q
    ||||||||||||||||||||||||||||||||    
T  21449582 aggaagaagttagtttagatgatccgtgataa 21449613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 21978814 - 21978845
Alignment:
Q  17 aggaagaagttagtttagatgatccgtgataa 48  Q
    ||||||||||||||||||||||||||||||||    
T  21978814 aggaagaagttagtttagatgatccgtgataa 21978845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 22001245 - 22001276
Alignment:
Q  17 aggaagaagttagtttagatgatccgtgataa 48  Q
    ||||||||||||||||||||||||||||||||    
T  22001245 aggaagaagttagtttagatgatccgtgataa 22001276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 41973554 - 41973585
Alignment:
Q  17 aggaagaagttagtttagatgatccgtgataa 48  Q
    ||||||||||||||||||||||||||||||||    
T  41973554 aggaagaagttagtttagatgatccgtgataa 41973585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 49326240 - 49326271
Alignment:
Q  17 aggaagaagttagtttagatgatccgtgataa 48  Q
    ||||||||||||||||||||||||||||||||    
T  49326240 aggaagaagttagtttagatgatccgtgataa 49326271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 172; Significance: 3e-92; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 140 - 380
Target Start/End: Complemental strand, 39599296 - 39599054
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |||||||| ||||||| ||||||||    
T  39599296 aataatatatattatttaaactttcattatgttttaatttacgtcaaatatgttcatttaatcgataaaataaccaaagatatacttttcgaattacgaa 39599197  T
Q  240 --ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagttta 337  Q
      ||| ||||||||| ||||||||||||||| | |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39599196 atccgaattgacctatggcgtaagtgtgttctggaaaacgaaatccggaatacctcagcatatgattcttttgtatggaccacattgcaccaggagttta 39599097  T
Q  338 tgtggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    ||||| ||||||||||||| |||||||||||||||||| ||||    
T  39599096 tgtggcccacaacatccaatgacctctataaatacatcctctc 39599054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 144 - 371
Target Start/End: Original strand, 5748963 - 5749192
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    ||||||||||| |||||||||||||||||||||||||| | ||| |||||| |||||||||||||||||| ||||||||  |||||||||||||||  ||    
T  5748963 atatatattatctaaactttcattatgttttaatttacgtaaaatatgttcatttaatcgataaaataaccaaagatatggttttcggattacgaaatcc 5749062  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    ||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| | |||||||||||||| || ||||||||    
T  5749063 ggatttacctagggcgtatgtgtgttccggaaaatgaaatccggaatacctcagcataagattcttttgtacgtaccacattgcaccaagaatttatgtg 5749162  T
Q  342 gtccacaacatccaaggacctctataaata 371  Q
    ||||||||||||||||||||||||||||||    
T  5749163 gtccacaacatccaaggacctctataaata 5749192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 144 - 352
Target Start/End: Original strand, 10222297 - 10222507
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| ||||||||  |||||||||||||||  ||    
T  10222297 atatatattatttaaactttcattatgttttaatttacgtcaaatatgttcatttattcgataaaataaccaaagatatgattttcggattacgaaatcc 10222396  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    |||||  ||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  10222397 ggatttgcctagggcgtatgtgtgttccggaaaacgaaatccggaatacctcagcataggattcttttgtatgggccacattgcaccaggagtttatgtg 10222496  T
Q  342 gtccacaacat 352  Q
    |||||||||||    
T  10222497 gtccacaacat 10222507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 144 - 380
Target Start/End: Complemental strand, 18277595 - 18277358
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| |||||  |||| ||||||||||||| |||||||| ||||||||||||||||  ||    
T  18277595 atatatattatttaaactttcattatattttaatttacgtcaaatatgtttatttattcgataaaataaccaaagatatgcttttcggattacgaactcc 18277496  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    |||||  ||||||||||| |||||||||| |||| |||||| ||||||||||| ||||||||||||||||||||| |||||||||||| |||||||||||    
T  18277495 ggatttgcctagggcgtatgtgtgttccggaaaacgaaatctggaatacctcatcataggattcttttgtatgga-cacattgcaccaagagtttatgtg 18277397  T
Q  342 gtccacaacatccaaggacctctataaatacatcatctc 380  Q
    ||||||||||||||||||||||||||||| |||| ||||    
T  18277396 gtccacaacatccaaggacctctataaatccatcctctc 18277358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 144 - 371
Target Start/End: Original strand, 30517439 - 30517668
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| |||||||| | || | ||||| |||  ||    
T  30517439 atatatatcatttaaactttcattatgtttaaatttacgtcaaaaatgttcatttaatcgataaaataaccaaagatatgcattccagattatgaaatcc 30517538  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    ||||| || |||||||||||||||||||  |  |  ||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||    
T  30517539 ggattcacatagggcgtaagtgtgttcctgattactaaatccggaatacttcagcatatgattcttttgtatggaccacattgcaccaagagtttatatg 30517638  T
Q  342 gtccacaacatccaaggacctctataaata 371  Q
    ||||||||||||||||||||||||||||||    
T  30517639 gtccacaacatccaaggacctctataaata 30517668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 153 - 375
Target Start/End: Original strand, 3474328 - 3474552
Alignment:
Q  153 atttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--ccggattgacc 250  Q
    ||||||||||||||||||||||||||||| ||||| |||||| |||| || |||||||||| ||||||||  ||||||||| |||||  | |||||  ||    
T  3474328 atttaaactttcattatgttttaatttacgtcaaatatgttcatttattcaataaaataaccaaagatatttttttcggatcacgaaatctggatttgcc 3474427  T
Q  251 tagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaac 350  Q
    ||||||||| |||||||||  |||  |||||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3474428 tagggcgtatgtgtgttccagaaatcgaaatccggaatacctcaacatataattcttttgtatggaccacattgcaccaggagtttatgtggtccacaac 3474527  T
Q  351 atccaaggacctctataaatacatc 375  Q
    |||||| ||||| ||||||||||||    
T  3474528 atccaatgacctttataaatacatc 3474552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 144 - 374
Target Start/End: Complemental strand, 4852420 - 4852190
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||||||| |||||||||| ||||||| |||||| ||||| |||||| |||| ||||||||||||  |||||||| ||||||||||||||||  ||    
T  4852420 atatatattatt-aaactttcatcatgtttttatttacgtcaaatatgttcattta-tcgataaaataatcaaagatatgcttttcggattacgaaatcc 4852323  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    |||||   |||||||||| ||||||| || |||| ||||||||||||||||||||||||||||||||||||| ||||||||||  ||| |||||||||||    
T  4852322 ggatttgtctagggcgtatgtgtgtttcggaaaacgaaatccggaatacctcagcataggattcttttgtatagaccacattgtcccaagagtttatgtg 4852223  T
Q  342 gtccacaacatccaaggacctctataaatacat 374  Q
    ||||| ||||||||| |||||||||||||||||    
T  4852222 gtccataacatccaatgacctctataaatacat 4852190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 140 - 384
Target Start/End: Original strand, 7563606 - 7563852
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    |||||||||||||||| ||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||| | || ||||    |||||||||  ||    
T  7563606 aataatatatattattcaaactttcattatgttttaatttacgtcaaagatgttcatttaatcgataaaataattgaatatatgtagttcggattataaa 7563705  T
Q  240 --ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagttta 337  Q
      ||||||| || ||| |||||||||| |||||||    ||| |||||||  | ||| |||||||| ||||||||||||||||||||||||| |||||||    
T  7563706 atccggatttacatagagcgtaagtgtattccgaatttcgaattccggaaagcatcatcataggatccttttgtatggaccacattgcaccaagagttta 7563805  T
Q  338 tgtggtccacaacatccaaggacctctataaatacatcatctctgat 384  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||    
T  7563806 tgtggtccacaacatccaaggacctctataaatacaccctctctgat 7563852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 240 - 374
Target Start/End: Complemental strand, 14271312 - 14271178
Alignment:
Q  240 ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatg 339  Q
    |||||||  ||||||||||| |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||    
T  14271312 ccggatttgcctagggcgtatgtgtgttccggaaaacgaaatccggaatacctcaacataggattcttttgtatggaccagattgcaccaagagtttatg 14271213  T
Q  340 tggtccacaacatccaaggacctctataaatacat 374  Q
    ||||| |||||||||||||||||||||||||||||    
T  14271212 tggtctacaacatccaaggacctctataaatacat 14271178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 285 - 378
Target Start/End: Original strand, 10311794 - 10311887
Alignment:
Q  285 gaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaatacatcatc 378  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||    
T  10311794 gaatacctcagcataggattcttttgtatagaccacattgcaccaagagtttatgtggtccacaacatccaatgatctctataaatacatcatc 10311887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 290 - 373
Target Start/End: Original strand, 6604951 - 6605034
Alignment:
Q  290 cctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaataca 373  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  6604951 cctcagcatagaattcttttgtatggacaacattgcaccaagagtttatgtggtccacaacatccaaggacctctataaataca 6605034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 148 - 239
Target Start/End: Original strand, 22334515 - 22334606
Alignment:
Q  148 atattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| |||||||| ||||||||||||||||    
T  22334515 atattatttaaactttcattatgttttaatttacgtcaaatatgttcatttattcgataaaataaccaaagatatgcttttcggattacgaa 22334606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 144 - 219
Target Start/End: Original strand, 17384963 - 17385038
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaaga 219  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| |||||| |||||||||||||||||| |||||    
T  17384963 atatatattatttaaactttcattatattttaatttacgtcaaagatgttcatttaatcgataaaataaccaaaga 17385038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 292 - 380
Target Start/End: Original strand, 12524114 - 12524202
Alignment:
Q  292 tcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    ||||||| |||||||||||| |   ||||||||||||  |||||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  12524114 tcagcattggattcttttgtgtttcccacattgcaccgagagtttatatggtccacaacatccaaggacctttataaatacatcctctc 12524202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 279 - 371
Target Start/End: Complemental strand, 41367792 - 41367700
Alignment:
Q  279 aatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaata 371  Q
    |||||| ||| | ||| |||| ||||||||||||||||||||| |||||||  ||||||| || |||||||| ||||  ||||||||||||||    
T  41367792 aatccgaaatgcttcaacatatgattcttttgtatggaccacaatgcaccaacagtttatatgctccacaacgtccagagacctctataaata 41367700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 144 - 187
Target Start/End: Complemental strand, 29251732 - 29251689
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaa 187  Q
    |||||||||||||||||||||||||||||||||||||| |||||    
T  29251732 atatatattatttaaactttcattatgttttaatttacatcaaa 29251689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 10311751 - 10311793
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaa 186  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  10311751 atatatattatttaaactttcattatgttttaatttacgtcaa 10311793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 4852569 - 4852538
Alignment:
Q  17 aggaagaagttagtttagatgatccgtgataa 48  Q
    ||||||||||||||||||||||||||||||||    
T  4852569 aggaagaagttagtttagatgatccgtgataa 4852538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 18277724 - 18277693
Alignment:
Q  17 aggaagaagttagtttagatgatccgtgataa 48  Q
    ||||||||||||||||||||||||||||||||    
T  18277724 aggaagaagttagtttagatgatccgtgataa 18277693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 22334382 - 22334413
Alignment:
Q  17 aggaagaagttagtttagatgatccgtgataa 48  Q
    ||||||||||||||||||||||||||||||||    
T  22334382 aggaagaagttagtttagatgatccgtgataa 22334413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 328
Target Start/End: Original strand, 21534950 - 21534988
Alignment:
Q  290 cctcagcataggattcttttgtatggaccacattgcacc 328  Q
    |||||||||||||||||||||| ||||||||| ||||||    
T  21534950 cctcagcataggattcttttgtgtggaccacaatgcacc 21534988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 30516756 - 30516810
Alignment:
Q  317 ccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaata 371  Q
    ||||||||||||| ||||||||||||||||||||  ||||  | |||||||||||    
T  30516756 ccacattgcaccaagagtttatgtggtccacaacgcccaaataactctataaata 30516810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 39599419 - 39599391
Alignment:
Q  17 aggaagaagttagtttagatgatccgtga 45  Q
    |||||||||||||||||||||||||||||    
T  39599419 aggaagaagttagtttagatgatccgtga 39599391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 168; Significance: 6e-90; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 140 - 380
Target Start/End: Complemental strand, 109774 - 109532
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| ||| |||| ||||||||||||||||    
T  109774 aataatatatattatttaaactttcattatgttttaatttacgtcaaatatgttcatttattcgataaaataaccaaatatatgcttttcggattacgaa 109675  T
Q  240 --ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagttta 337  Q
      ||| |||  ||||||||||| |||||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  109674 atccgaatttgcctagggcgtatgtgtgttccggaaaacgaaatccggaatacctcagaataggattcttttgtatggaccacattgcaccaggagttta 109575  T
Q  338 tgtggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||||||||||||||||||||||||||||||| ||||| ||||    
T  109574 tgtggtccacaacatccaaggacctctataaacacatcctctc 109532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 140 - 380
Target Start/End: Original strand, 15031652 - 15031894
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||| |||||| || | ||||||||||||| ||||||||   ||||||||||||||    
T  15031652 aataatatatattatttaaactttcattatgttttaatttacgtcaaatatgttcattaattcgataaaataaccaaagatatgactttcggattacgaa 15031751  T
Q  240 --ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagttta 337  Q
      |||||||  ||||||||||| |||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||    
T  15031752 atccggatttgcctagggcgtatgtgtgttccggaaaacgaaatccggaatacctcagcatatgattcttttgtatggaccacattgcaccaagagttta 15031851  T
Q  338 tgtggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||||||||||||||||||||||||||||||||||||| ||||    
T  15031852 tgtggtccacaacatccaaggacctctataaatacatcctctc 15031894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 144 - 380
Target Start/End: Original strand, 35584116 - 35584354
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| ||| |||| |||||||||||| |||  ||    
T  35584116 atatatattatttaaactttcattatgttttaatttacgtcaaatatgttcatttattcgataaaataaccaaatatatgcttttcggattatgaaatcc 35584215  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    |||||  ||||||||||| |||||||||| |||| |||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||    
T  35584216 ggatttgcctagggcgtatgtgtgttccggaaaacgaaatctggaatacctcagcatatgattcttttgtatcgaccacattgcaccaggagtttatgtg 35584315  T
Q  342 gtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||||||||||||||||||||||||||||||||||||||    
T  35584316 gtccacaacatccaaggacctctataaatacatcatctc 35584354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 144 - 380
Target Start/End: Original strand, 43748256 - 43748494
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaac--c 241  Q
    |||||||||||| ||||||||||||||||||||||||| ||||| |||||  |||| ||||||||||||| ||||||||  |||| ||||||||||   |    
T  43748256 atatatattattaaaactttcattatgttttaatttacgtcaaatatgtttatttattcgataaaataaccaaagatatgatttttggattacgaaattc 43748355  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    |||||  ||||||||||| ||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  43748356 ggatttgcctagggcgtatgtgtgttccgaaaaacgaaatcccgaatacctcagcataagattcttttgtatggaccacattgcaccaggagtttatgtg 43748455  T
Q  342 gtccacaacatccaaggacctctataaatacatcatctc 380  Q
     ||||||||||||||||||||||||||||||||| ||||    
T  43748456 atccacaacatccaaggacctctataaatacatcctctc 43748494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 144 - 380
Target Start/End: Original strand, 7254447 - 7254684
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| | ||||||||||| ||||||||  |||||||||||||||  ||    
T  7254447 atatatattatttaaactttcattatgttttaatttacgtcaaatatgttcatttatttgataaaataaccaaagatatgattttcggattacgaaatcc 7254546  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    |||||  ||||||| ||| |||||||  | |||| |||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  7254547 ggattcgcctaggg-gtatgtgtgttttggaaaacgaaatccggaatacctcaacatatgattcttttgtatggaccacattgcaccaggagtttatgtg 7254645  T
Q  342 gtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  7254646 gtccacaacatccaaggacctctataaatacatcctctc 7254684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 144 - 380
Target Start/End: Complemental strand, 26793065 - 26792836
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| ||||||||  |||||||||| ||||  ||    
T  26793065 atatatattatttaaactttcattatgttttaatttacgtcaaatatgttcatttattcgataaaataaccaaagatatgattttcggattgcgaaatcc 26792966  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    |||||  ||||||||||| |||||||| |||||| ||||||||||||||||||||||| |||||||||||         ||||||||| |||||||||||    
T  26792965 ggatttgcctagggcgtatgtgtgttctgaaaaacgaaatccggaatacctcagcatatgattcttttgt---------attgcaccaagagtttatgtg 26792875  T
Q  342 gtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  26792874 gtccacaacatccaaggacctctataaatacatcctctc 26792836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 165 - 380
Target Start/End: Original strand, 29331376 - 29331593
Alignment:
Q  165 attatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--ccggattgacctagggcgtaagt 262  Q
    ||||||||||||||||| ||||| |||||| |||| ||||||||||||| ||||||||  |||| ||||||||||  |||||||  | ||||||||| ||    
T  29331376 attatgttttaatttacgtcaaatatgttcatttattcgataaaataaccaaagatatgatttttggattacgaaatccggatttgcttagggcgtatgt 29331475  T
Q  263 gtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacct 362  Q
    ||||| || |||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  29331476 gtgtttcggaaaacgaaatccggaatacctcaacataggattcttttgtatagaccacattgcaccaggagtttttgtggtccacaacatccaaggacct 29331575  T
Q  363 ctataaatacatcatctc 380  Q
    ||||||||||||| ||||    
T  29331576 ctataaatacatcctctc 29331593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 144 - 344
Target Start/End: Complemental strand, 33851142 - 33850940
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    ||||||||||| |||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||  ||||||||  |||||||||||||||  ||    
T  33851142 atatatattatctaaactttcattatgttttaatttacgtcaaatatgttcatttattcgataaaataatcaaagatatgattttcggattacgaaatcc 33851043  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    | |||  ||||||||||| |||||||| | ||||  ||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  33851042 gaatttgcctagggcgtatgtgtgttctggaaaacaaaatctggaatacctcagcataagattcttttgtatggaccacattgcaccaggagtttatgtg 33850943  T
Q  342 gtc 344  Q
    |||    
T  33850942 gtc 33850940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 240 - 380
Target Start/End: Complemental strand, 45491074 - 45490934
Alignment:
Q  240 ccggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatg 339  Q
    |||||||  ||||||||||| |||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||    
T  45491074 ccggatttgcctagggcgtatgtgtgttccggaaaacgaaatccggaatacctcaacataggattcttttgtatggaccacattgcaccaagagtttatg 45490975  T
Q  340 tggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  45490974 tggtccacaacatccaaggacctctataaatacatcctctc 45490934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 277 - 375
Target Start/End: Original strand, 38256657 - 38256755
Alignment:
Q  277 gaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaatacatc 375  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38256657 gaaatccggaatacctcagcatagaattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaatacatc 38256755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 277 - 375
Target Start/End: Original strand, 38264232 - 38264330
Alignment:
Q  277 gaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaatacatc 375  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38264232 gaaatccggaatacctcagcatagaattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaatacatc 38264330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 277 - 377
Target Start/End: Complemental strand, 37999615 - 37999515
Alignment:
Q  277 gaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaatacatca 376  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||| ||||||||||||    
T  37999615 gaaatccggaatacctcagcatatgattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacattccaagacctccataaatacatca 37999516  T
Q  377 t 377  Q
    |    
T  37999515 t 37999515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 140 - 239
Target Start/End: Complemental strand, 37999711 - 37999613
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa 239  Q
    |||| ||||||||||||||||||||||||||||||||||||| ||||| |||||| |||||  ||||||||||| |||||||||| ||||||||||||||    
T  37999711 aatattatatattatttaaactttcattatgttttaatttacgtcaaatatgttcatttaacagataaaataaccaaagatatcc-tttcggattacgaa 37999613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 38256559 - 38256659
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataa-ctaaagatatccttttcggattacga 238  Q
    |||||||||||||||||||||||||||||||||||||||||| || || |||||| |||| |||||||||||| | ||| ||||  ||||||||||||||    
T  38256559 aataatatatattatttaaactttcattatgttttaatttacgtctaatatgttcatttattcgataaaataaccaaaatatatgattttcggattacga 38256658  T
Q  239 a 239  Q
    |    
T  38256659 a 38256659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 38264134 - 38264234
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataa-ctaaagatatccttttcggattacga 238  Q
    |||||||||||||||||||||||||||||||||||||||||| || || |||||| |||| |||||||||||| | ||| ||||  ||||||||||||||    
T  38264134 aataatatatattatttaaactttcattatgttttaatttacgtctaatatgttcatttattcgataaaataaccaaaatatatgattttcggattacga 38264233  T
Q  239 a 239  Q
    |    
T  38264234 a 38264234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 200
Target Start/End: Original strand, 19516391 - 19516451
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaa 200  Q
    |||||||||||||||||||| ||||||||||||||| |||||  |||| |||||| |||||    
T  19516391 aataatatatattatttaaattttcattatgttttactttacgccaaagatgttcatttaa 19516451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 303 - 355
Target Start/End: Complemental strand, 19647901 - 19647849
Alignment:
Q  303 ttcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatcca 355  Q
    ||||||||||||||||||||||||||   ||||||||||||||||||| ||||    
T  19647901 ttcttttgtatggaccacattgcaccgacagtttatgtggtccacaacgtcca 19647849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 144 - 180
Target Start/End: Original strand, 22203722 - 22203758
Alignment:
Q  144 atatatattatttaaactttcattatgttttaattta 180  Q
    |||||||||||||||||||||||||||||||||||||    
T  22203722 atatatattatttaaactttcattatgttttaattta 22203758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 292 - 350
Target Start/End: Complemental strand, 1852931 - 1852873
Alignment:
Q  292 tcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaac 350  Q
    |||||||||||||||||| ||||||||||| ||||||   | |||||||||||||||||    
T  1852931 tcagcataggattcttttatatggaccacaatgcaccgacaatttatgtggtccacaac 1852873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 15031529 - 15031560
Alignment:
Q  17 aggaagaagttagtttagatgatccgtgataa 48  Q
    ||||||||||||||||||||||||||||||||    
T  15031529 aggaagaagttagtttagatgatccgtgataa 15031560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 48
Target Start/End: Original strand, 22203596 - 22203627
Alignment:
Q  17 aggaagaagttagtttagatgatccgtgataa 48  Q
    ||||||||||||||||||||||||||||||||    
T  22203596 aggaagaagttagtttagatgatccgtgataa 22203627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 380
Target Start/End: Complemental strand, 33849657 - 33849618
Alignment:
Q  341 ggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||| |||||||||||||| ||||||||||||||||||||    
T  33849657 ggtctacaacatccaaggatctctataaatacatcatctc 33849618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 210
Target Start/End: Complemental strand, 1853070 - 1853000
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaat 210  Q
    ||||||||||||||| |||| ||||||||||||||| |||||   ||| |||||| ||||| || ||||||    
T  1853070 aataatatatattatctaaattttcattatgttttactttacgctaaagatgttcatttaaacgctaaaat 1853000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 31325172 - 31325226
Alignment:
Q  146 atatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaa 200  Q
    ||||||| |||||| ||||||||||||||| ||||| ||||| |||||| |||||    
T  31325172 atatattctttaaattttcattatgttttactttacgtcaaagatgttcatttaa 31325226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 6e-90; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 144 - 380
Target Start/End: Original strand, 5342922 - 5343160
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||| ||  |||||| |||| |||  ||    
T  5342922 atatatattatttaaactttcattatgttttaatttacgtcaaatatgttcgtttattcgataaaataaccaaagaaatgattttcgaattaagaaatcc 5343021  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    |||||  ||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  5343022 ggatttgcctagggcgtatgtgtgttccgaaaaacgaaatccggaatacctcagcatatgattcttttgtatggaccacattgcaccaggagtttatgtg 5343121  T
Q  342 gtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  5343122 gtccacaacatccaaggacctctataaatacatcctctc 5343160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 144 - 374
Target Start/End: Original strand, 24854977 - 24855209
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaac--c 241  Q
    ||||||||||||||||||||||||||||||||| |||| ||||| |||||| |||| ||||||||||||| |||||||| ||||||||||||||||   |    
T  24854977 atatatattatttaaactttcattatgttttaaattacgtcaaatatgttcatttattcgataaaataaccaaagatatgcttttcggattacgaaattc 24855076  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    |||||  ||||||||||| |||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  24855077 ggattttcctagggcgtatgtgtgttccggaaaacgaaatacggaatacctcagcataggattcttttgtatggaccacattgcaccaagagtttatgtg 24855176  T
Q  342 gtccacaacatccaaggacctctataaatacat 374  Q
    |||| |||||| ||||||| |||||||||||||    
T  24855177 gtccgcaacattcaaggacatctataaatacat 24855209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 144 - 380
Target Start/End: Complemental strand, 32747927 - 32747689
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaac--c 241  Q
    |||||||||||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||||||||| ||| |||| ||||||||||||||||   |    
T  32747927 atatatattatttatactttcattatattttaatttacgtcaaatatgttcatttattcgataaaataaccaaatatatgcttttcggattacgaaattc 32747828  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    |||||  |||| | |||| |||||||| | |||  ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  32747827 ggatttgcctacgacgtatgtgtgttctggaaatcgaaatccggaatacctcagcatatgattcttttgtatggaccacattacaccaggagtttatgtg 32747728  T
Q  342 gtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||||||||||||||||||||||||||||||||||||||    
T  32747727 gtccacaacatccaaggacctctataaatacatcatctc 32747689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 164 - 380
Target Start/End: Original strand, 6431485 - 6431703
Alignment:
Q  164 cattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--ccggattgacctagggcgtaag 261  Q
    |||||||||||||||||| ||| | |||||| |||| ||||||||||||| |||||||| | ||||||||||||||  | |||||  ||||||||||| |    
T  6431485 cattatgttttaatttacgtcagatatgttcatttattcgataaaataaccaaagatatgcgtttcggattacgaaatctggatttgcctagggcgtatg 6431584  T
Q  262 tgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacc 361  Q
    |||||| || |||  |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  6431585 tgtgtttcggaaatcgaaatctggaatacctcagcataggattctttcgtatggaccacattgcaccaggagttcatgtggtccacaacatccaagaacc 6431684  T
Q  362 tctataaatacatcatctc 380  Q
    |||||||||||||||||||    
T  6431685 tctataaatacatcatctc 6431703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 147 - 373
Target Start/End: Original strand, 41615346 - 41615574
Alignment:
Q  147 tatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--ccgga 244  Q
    ||||||||||||| ||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |||||||| |  | ||||||| | |  | |||    
T  41615346 tatattatttaaaatttcattatgttttaatttacgtcaaatatgttcatttaatcgataaaataaccaaagatattcagtccggattatggaatctgga 41615445  T
Q  245 ttgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtc 344  Q
    || |  |||||||||||||| |||||||    ||||||||||   | ||| |||| ||| ||||||||||||||||||||||||| ||||||||||||||    
T  41615446 ttcatatagggcgtaagtgtattccgaatttcgaaatccggatagcttcaacatatgatccttttgtatggaccacattgcaccaagagtttatgtggtc 41615545  T
Q  345 cacaacatccaaggacctctataaataca 373  Q
    |||||||||||||||||||||| ||||||    
T  41615546 cacaacatccaaggacctctatcaataca 41615574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 171 - 372
Target Start/End: Original strand, 31471133 - 31471321
Alignment:
Q  171 ttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--ccggattgacctagggcgtaagtgtgttc 268  Q
    ||||||| ||| ||||| |||||| |||||||||||||||||| |||||||| | ||||||||||||||  ||||||| ||||||||||||||||| |||    
T  31471133 ttttaatgtacgtcaaatatgttcatttaatcgataaaataaccaaagatatgcctttcggattacgaaatccggattcacctagggcgtaagtgtattc 31471232  T
Q  269 cgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataa 368  Q
    || |||| || ||||||||||||||| ||||||||||||||||||               | ||||||||||||||||||||||||||||||||||||||    
T  31471233 cggaaaacgacatccggaatacctcaacataggattcttttgtat---------------aagagtttatgtggtccacaacatccaaggacctctataa 31471317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 292 - 328
Target Start/End: Complemental strand, 23248391 - 23248355
Alignment:
Q  292 tcagcataggattcttttgtatggaccacattgcacc 328  Q
    |||||||||||||||||||||||||||||||||||||    
T  23248391 tcagcataggattcttttgtatggaccacattgcacc 23248355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 180
Target Start/End: Complemental strand, 28335441 - 28335401
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaattta 180  Q
    |||||||||||||||||||| ||||||||||||||| ||||    
T  28335441 aataatatatattatttaaattttcattatgttttacttta 28335401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 31471094 - 31471123
Alignment:
Q  19 gaagaagttagtttagatgatccgtgataa 48  Q
    ||||||||||||||||||||||||||||||    
T  31471094 gaagaagttagtttagatgatccgtgataa 31471123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 157; Significance: 2e-83; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 143 - 380
Target Start/End: Original strand, 15112397 - 15112636
Alignment:
Q  143 aatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--c 240  Q
    ||||||||||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||  ||||||| |||||||||||| |||  |    
T  15112397 aatatatattatttaaactttcattatgttttaatttacgttaaatatgttcatttaatcgataaaataaccgaagatatgcttttcggattatgaaatc 15112496  T
Q  241 cggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgt 340  Q
    || ||  |||||||||||| ||||| ||||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  15112497 cgaatatacctagggcgtacgtgtgatccgaaaaacgaaattcggaatacctcaacataggattcttttgtatggaccacattgcaccaagagtttatgt 15112596  T
Q  341 ggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  15112597 ggtccacaacacccaaggacctctataaatacatcatctc 15112636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 144 - 380
Target Start/End: Original strand, 5463436 - 5463674
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    ||||||||||||| |||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||| ||||||||  |||||||||||||||  |     
T  5463436 atatatattattttaactttcattatgttttaatttacgtcaaatatgttcatttattcgataaaataaccaaagatatgattttcggattacgaaatct 5463535  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    |||||  |||||| |||| |||||||| | |||| ||||| |||||||||||| |||| ||||||||||||||||||||| | || || ||||| |||||    
T  5463536 ggatttgcctaggacgtatgtgtgttctggaaaacgaaattcggaatacctcaacatatgattcttttgtatggaccacactacaacaagagttcatgtg 5463635  T
Q  342 gtccacaacatccaaggacctctataaatacatcatctc 380  Q
    |||||||||||||||| || |||||||||||||| ||||    
T  5463636 gtccacaacatccaagcacatctataaatacatcctctc 5463674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 144 - 373
Target Start/End: Complemental strand, 34949538 - 34949316
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||         |||||||||||||| ||||| || |  |  |||||| |||  ||    
T  34949538 atatatattatttatactttcattatgttttaatttacgtcaaaaat---------atcgataaaataaccaaagaaatgcagtctggattatgaaatcc 34949448  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    ||||| || ||| |||||||||| ||||  |    ||| ||||||| || |||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  34949447 ggattcacatagagcgtaagtgtattccagatttcgaattccggaaaacatcagcataggatccttttgtatggaccacattgcaccaagagtttatgtg 34949348  T
Q  342 gtccacaacatccaaggacctctataaataca 373  Q
    ||||||||||||||| ||||||||||||||||    
T  34949347 gtccacaacatccaatgacctctataaataca 34949316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 292 - 380
Target Start/End: Complemental strand, 41962597 - 41962509
Alignment:
Q  292 tcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaatacatcatctc 380  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41962597 tcagcattggattcttttgtatggaccacattgcacgaggagtttatgtggtccacaacatccaaggacctctataaatacatcatctc 41962509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 144 - 373
Target Start/End: Original strand, 5937450 - 5937672
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||||||||||||||||||||||| ||||||||| ||||| ||         ||| |||||||||| ||||| || |  |  |||||| |||  ||    
T  5937450 atatatattatttaaactttcattatgtcttaatttacgtcaaagat---------atcaataaaataaccaaagaaatgcagtatggattatgaaatcc 5937540  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    ||||| || |||||||||||||| ||||| |   |||| | |||||  | |||||||| |||  ||||||||||||||||||| |||| |||||||||||    
T  5937541 ggattcacatagggcgtaagtgtattccggattttgaatttcggaaagcatcagcatatgatctttttgtatggaccacattgtaccaagagtttatgtg 5937640  T
Q  342 gtccacaacatccaaggacctctataaataca 373  Q
    ||||||||||||||||||||||||||||||||    
T  5937641 gtccacaacatccaaggacctctataaataca 5937672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 290 - 373
Target Start/End: Complemental strand, 45536501 - 45536418
Alignment:
Q  290 cctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaataca 373  Q
    ||||| ||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||    
T  45536501 cctcaacataggattattttgtatggaccacattgcaccaagagttaatgtggtccacaacatccaaggacctctacaaataca 45536418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 279 - 371
Target Start/End: Original strand, 21484384 - 21484476
Alignment:
Q  279 aatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaata 371  Q
    |||||| ||| ||||| |||||||||||||||||||||||||| ||||||   | ||||||||||||||||| ||||  ||||||||||||||    
T  21484384 aatccgaaatccctcaacataggattcttttgtatggaccacaatgcaccgacattttatgtggtccacaacgtccagagacctctataaata 21484476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 18964411 - 18964355
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaa 200  Q
    |||||||||||||||||||| ||||||||||||||||| ||||| |||||| |||||    
T  18964411 atatatattatttaaactttgattatgttttaatttacgtcaaagatgttcatttaa 18964355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 140 - 210
Target Start/End: Original strand, 21484262 - 21484332
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaat 210  Q
    ||||||||||||||| |||| ||||||||||| ||| |||||  |||| |||||| ||||| || ||||||    
T  21484262 aataatatatattatctaaattttcattatgtgttactttacgccaaagatgttcatttaaacgctaaaat 21484332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 37126992 - 37127042
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttc 194  Q
    |||||||||||||||| |||||||||| |||| ||||| ||||| ||||||    
T  37126992 atatatattatttaaattttcattatgatttactttacatcaaagatgttc 37127042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 371
Target Start/End: Complemental strand, 18964294 - 18964201
Alignment:
Q  278 aaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaata 371  Q
    ||||||||| | ||| |||||| |||||||||||  || ||||||||||||   ||||| ||| |||||||||| |||   |||||||||||||    
T  18964294 aaatccggactgccttagcatatgattcttttgtgaggtccacattgcaccgacagtttttgttgtccacaacaaccataaacctctataaata 18964201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 8e-74; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 8e-74
Query Start/End: Original strand, 144 - 373
Target Start/End: Complemental strand, 13037967 - 13037736
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    ||||||||||||||| |||| ||||||||||||||||| ||||| |||||| |||| ||||||||||||  |||||||   |||||||||||||||  ||    
T  13037967 atatatattatttaacctttaattatgttttaatttacgtcaaatatgttcatttattcgataaaataaacaaagataggattttcggattacgaaatcc 13037868  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    | |||  ||||||||||  |||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13037867 gaatttgcctagggcgtgtgtgtgttccggaaaatgaaatccagaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 13037768  T
Q  342 gtccacaacatccaaggacctctataaataca 373  Q
    ||||||||||||||||||||| || |||||||    
T  13037767 gtccacaacatccaaggacctttaaaaataca 13037736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 278 - 355
Target Start/End: Original strand, 3513849 - 3513926
Alignment:
Q  278 aaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatcca 355  Q
    ||||||||| | ||||||||||||||||||||||  |||||||||| |||    | ||| ||||||||||||||||||    
T  3513849 aaatccggactgcctcagcataggattcttttgtgaggaccacatttcacagacaatttttgtggtccacaacatcca 3513926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 144 - 177
Target Start/End: Complemental strand, 34949955 - 34949922
Alignment:
Q  144 atatatattatttaaactttcattatgttttaat 177  Q
    ||||||||||||||||||||||||||||||||||    
T  34949955 atatatattatttaaactttcattatgttttaat 34949922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 18 - 48
Target Start/End: Complemental strand, 13038118 - 13038088
Alignment:
Q  18 ggaagaagttagtttagatgatccgtgataa 48  Q
    |||||||||||||||||||||||||||||||    
T  13038118 ggaagaagttagtttagatgatccgtgataa 13038088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 355
Target Start/End: Original strand, 12304454 - 12304531
Alignment:
Q  278 aaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatcca 355  Q
    ||||||||| | ||||| ||||||||| ||||||  ||| |||||||||||   | ||| ||||||||||||||||||    
T  12304454 aaatccggattgcctcaacataggattattttgtgaggatcacattgcaccgacaatttttgtggtccacaacatcca 12304531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 140 - 200
Target Start/End: Complemental strand, 20819601 - 20819541
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaa 200  Q
    ||||||||||||||| |||| ||| ||||||| ||| ||||| ||||| |||||| |||||    
T  20819601 aataatatatattatctaaatttttattatgtgttactttacgtcaaagatgttcatttaa 20819541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 25136655 - 25136711
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaa 200  Q
    |||||||||||||||| ||||||||||| ||| |||||  |||| |||||| |||||    
T  25136655 atatatattatttaaattttcattatgtgttactttacgccaaagatgttcatttaa 25136711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 292 - 328
Target Start/End: Original strand, 25137834 - 25137870
Alignment:
Q  292 tcagcataggattcttttgtatggaccacattgcacc 328  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  25137834 tcagcatatgattcttttgtatgggccacattgcacc 25137870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 144 - 380
Target Start/End: Complemental strand, 24831834 - 24831596
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaa--cc 241  Q
    |||||||||||||||||||||||||||||||||||||| ||||| |||||| | || || |||||||||| ||||||||  |||||||||||||||  ||    
T  24831834 atatatattatttaaactttcattatgttttaatttacgtcaaatatgttcatatattcaataaaataaccaaagatatgattttcggattacgaaatcc 24831735  T
Q  242 ggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtg 341  Q
    ||||   |||||||| ||  ||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| |    
T  24831734 ggatatgcctagggcttatctgtgttccggaaaacgaaatccggaatacctcagcataagattcttttgtatggaccacattgcactaggagtttatgcg 24831635  T
Q  342 gtccacaacatccaaggacctctataaatacatcatctc 380  Q
    ||||||||||||||| |||||||||||||||||| ||||    
T  24831634 gtccacaacatccaaagacctctataaatacatcctctc 24831596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 144 - 375
Target Start/End: Original strand, 10788 - 11013
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataactaaagatatccttttcggattacgaaccgg 243  Q
    ||||||||||||||||||||||||||||||||||| || ||||| |||||| |||| ||||||||||||| ||| ||||  |||||||||||||     |    
T  10788 atatatattatttaaactttcattatgttttaatt-acgtcaaatatgttcatttattcgataaaataaccaaatatatgattttcggattacg-----g 10881  T
Q  244 attgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggt 343  Q
    |||  |||| |||||| |||||||||| |||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||    
T  10882 atttgcctatggcgtatgtgtgttccggaaaacgaaatccggaatacctcagcattggattcttttgtatggaccgcattgcaccaagagtttatgtggt 10981  T
Q  344 ccacaacatccaaggacctctataaatacatc 375  Q
    |||||||||| ||| |||||||||||||||||    
T  10982 ccacaacatcgaagaacctctataaatacatc 11013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 302 - 373
Target Start/End: Complemental strand, 41835604 - 41835533
Alignment:
Q  302 attcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaataca 373  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  41835604 attcttttgtatggaccacattgcaccaaaagtttatgtggtccacaacatccaaggacctctataaataca 41835533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 371
Target Start/End: Complemental strand, 11457795 - 11457716
Alignment:
Q  292 tcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaata 371  Q
    |||||||||||||||||||||||||||||| ||||||   | ||||||||||||||||| ||||  ||||||||||||||    
T  11457795 tcagcataggattcttttgtatggaccacaatgcaccgacaatttatgtggtccacaacgtccagagacctctataaata 11457716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 144 - 212
Target Start/End: Complemental strand, 41835754 - 41835686
Alignment:
Q  144 atatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataa 212  Q
    |||||||||||||||||||||||||||||||||||||  ||||| |||||| |||| |  |||||||||    
T  41835754 atatatattatttaaactttcattatgttttaatttatgtcaaagatgttcatttattatataaaataa 41835686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 203 - 375
Target Start/End: Complemental strand, 16607 - 16433
Alignment:
Q  203 gataaaataactaaagatatccttttcggattacgaac--cggattgacctagggcgtaagtgtgttccgaaaaatgaaatccggaatacctcagcatag 300  Q
    |||||||||||  ||||||| ||||||||||||||||   || |||  ||||||||||| ||||||| || |||| ||||||||||||||||||||||||    
T  16607 gataaaataaccgaagatatgcttttcggattacgaaattcgaatttgcctagggcgtatgtgtgtttcggaaaacgaaatccggaatacctcagcatag 16508  T
Q  301 gattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaatacatc 375  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  16507 gattcttttgtatggaccacattgcaccaagagtttatgtggtccacaacatccaaggacctctataagtacatc 16433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 62291 - 62354
Alignment:
Q  292 tcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatcca 355  Q
    ||||||||||||||||||||||| |||||||||||||| |  ||||||||||||||||||||||    
T  62291 tcagcataggattcttttgtatgaaccacattgcaccaaggatttatgtggtccacaacatcca 62354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 279 - 371
Target Start/End: Original strand, 18161 - 18253
Alignment:
Q  279 aatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaata 371  Q
    |||||| ||| ||| |||||||||||||||||||||||||||| ||||||   | ||| ||||||||||||||||||  ||| ||||||||||    
T  18161 aatccgaaatcccttagcataggattcttttgtatggaccacaatgcaccgatattttctgtggtccacaacatccagagacttctataaata 18253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 18039 - 18111
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataa 212  Q
    ||||||||||||||| |||| ||||||||||| ||| ||||| ||||| |||||| ||||| || ||||||||    
T  18039 aataatatatattatataaattttcattatgtgttactttacgtcaaatatgttcatttaaacgctaaaataa 18111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 300 - 371
Target Start/End: Original strand, 426514 - 426585
Alignment:
Q  300 ggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaata 371  Q
    |||||||||||||||| |||||||||||||  ||||| ||||||||||||| ||||   |||||||||||||    
T  426514 ggattcttttgtatggtccacattgcaccaatagtttttgtggtccacaacgtccagatacctctataaata 426585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 212
Target Start/End: Original strand, 426326 - 426398
Alignment:
Q  140 aataatatatattatttaaactttcattatgttttaatttacttcaaaaatgttcgtttaatcgataaaataa 212  Q
    ||||||||||||||||||||||||||| |||||| | |||||   ||| |||||| ||||| || ||||||||    
T  426326 aataatatatattatttaaactttcatcatgtttaactttacggtaaagatgttcatttaaacgctaaaataa 426398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 279 - 371
Target Start/End: Original strand, 37193 - 37285
Alignment:
Q  279 aatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaata 371  Q
    |||||| ||| | ||| |||| ||||||||||||||||||||| |||||||  ||||||| || |||||||  ||||  ||||||||||||||    
T  37193 aatccgaaatgcttcaacatatgattcttttgtatggaccacaatgcaccaacagtttatatgctccacaatgtccagagacctctataaata 37285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 371
Target Start/End: Complemental strand, 250818 - 250726
Alignment:
Q  279 aatccggaatacctcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatccaaggacctctataaata 371  Q
    ||||||||| || |||| || |||||||||||| ||| ||||||| ||||   | ||||||||||||||||| |  | |||||||||||||||    
T  250818 aatccggaaaacttcaggattggattcttttgtgtggcccacattacaccgacaatttatgtggtccacaacgttgagggacctctataaata 250726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0210 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0210
Description:

Target: scaffold0210; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 292 - 355
Target Start/End: Original strand, 7371 - 7434
Alignment:
Q  292 tcagcataggattcttttgtatggaccacattgcaccaggagtttatgtggtccacaacatcca 355  Q
    |||||||||||||||||||||||||||||| | |||||   |||| ||| ||||||||| ||||    
T  7371 tcagcataggattcttttgtatggaccacactacaccaactgtttttgtcgtccacaacgtcca 7434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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