View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10186_low_17 (Length: 302)
Name: NF10186_low_17
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10186_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 120 - 292
Target Start/End: Complemental strand, 38788351 - 38788179
Alignment:
| Q |
120 |
gtctgattattaacatgatcagtatttttacctgagtttaatggttacacacctgcagcgcacaattttacactgacatccaatgagagaccaccatttt |
219 |
Q |
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| T |
38788351 |
gtctgattattaacatgatcagtatttttacctgagtttaatggttacacactggcagcccacaattttacactgacatccaatgagagaccaccatttt |
38788252 |
T |
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| Q |
220 |
tccacatcacacaatcagcttcaaaatacatgtacattgaaaatgcacatcctctgattcctctttacctttg |
292 |
Q |
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| T |
38788251 |
tccacatcacacaatcagcttcaaaatacatgtacattgaaaatgcacatcctctgattcctctttacttttg |
38788179 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 21 - 125
Target Start/End: Complemental strand, 38788481 - 38788377
Alignment:
| Q |
21 |
catgcaaggacaaggaccctaatagttgttagctatggctatctggagtctatattacaattttggaatttcttttgatcaagacactgtaaaattagtg |
120 |
Q |
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| T |
38788481 |
catgcaagttcaaggaccctaatagttgttagctatggctatctggagtctatattacaattttggaatttcttttgatcaagagactgtaaaattagtg |
38788382 |
T |
|
| Q |
121 |
tctga |
125 |
Q |
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||||| |
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| T |
38788381 |
tctga |
38788377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 181 - 238
Target Start/End: Complemental strand, 29938668 - 29938611
Alignment:
| Q |
181 |
acaattttacactgacatccaatgagagaccaccatttttccacatcacacaatcagc |
238 |
Q |
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| T |
29938668 |
acaattttacactgacatccaatgagaagccaccatttttccacgtcacacaatcagc |
29938611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 219
Target Start/End: Original strand, 25789395 - 25789428
Alignment:
| Q |
186 |
tttacactgacatccaatgagagaccaccatttt |
219 |
Q |
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| T |
25789395 |
tttacactgacatccaatgagagaccaccatttt |
25789428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 220
Target Start/End: Original strand, 51669666 - 51669703
Alignment:
| Q |
183 |
aattttacactgacatccaatgagagaccaccattttt |
220 |
Q |
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| T |
51669666 |
aattttacactgacatccagtgagaaaccaccattttt |
51669703 |
T |
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