View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10186_low_18 (Length: 289)

Name: NF10186_low_18
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10186_low_18
NF10186_low_18
[»] chr1 (2 HSPs)
chr1 (6-273)||(26399904-26400171)
chr1 (174-231)||(21002249-21002306)
[»] chr8 (6 HSPs)
chr8 (137-237)||(9700058-9700158)
chr8 (14-51)||(14929295-14929332)
chr8 (171-232)||(16162851-16162912)
chr8 (14-56)||(31875672-31875714)
chr8 (169-233)||(6918124-6918188)
chr8 (168-228)||(8629201-8629261)
[»] chr3 (10 HSPs)
chr3 (134-237)||(43115110-43115213)
chr3 (171-232)||(44014716-44014777)
chr3 (14-54)||(28842972-28843012)
chr3 (142-233)||(49605768-49605859)
chr3 (15-57)||(31075610-31075652)
chr3 (16-54)||(48528495-48528533)
chr3 (174-239)||(25459541-25459606)
chr3 (11-56)||(36200030-36200075)
chr3 (139-183)||(29600702-29600746)
chr3 (14-54)||(44284173-44284213)
[»] chr6 (3 HSPs)
chr6 (142-232)||(2460069-2460159)
chr6 (17-71)||(740966-741020)
chr6 (137-241)||(281757-281861)
[»] chr4 (9 HSPs)
chr4 (142-232)||(27123270-27123360)
chr4 (174-236)||(28615428-28615490)
chr4 (137-238)||(6428075-6428176)
chr4 (15-53)||(54414865-54414903)
chr4 (137-234)||(11264358-11264455)
chr4 (193-238)||(35571543-35571588)
chr4 (10-54)||(2980586-2980630)
chr4 (14-54)||(24193500-24193540)
chr4 (169-237)||(47399574-47399642)
[»] chr5 (12 HSPs)
chr5 (137-218)||(32172710-32172791)
chr5 (137-232)||(25720335-25720430)
chr5 (14-54)||(26516213-26516253)
chr5 (14-54)||(40534109-40534149)
chr5 (174-237)||(10391436-10391499)
chr5 (170-229)||(10771809-10771868)
chr5 (22-54)||(6738522-6738554)
chr5 (169-241)||(11095404-11095476)
chr5 (14-54)||(19093961-19094001)
chr5 (14-54)||(20982250-20982290)
chr5 (22-54)||(36539669-36539701)
chr5 (16-56)||(36774799-36774839)
[»] chr2 (2 HSPs)
chr2 (162-235)||(6547971-6548044)
chr2 (162-231)||(11513978-11514047)
[»] scaffold0459 (1 HSPs)
scaffold0459 (145-237)||(6611-6703)
[»] scaffold0366 (1 HSPs)
scaffold0366 (145-237)||(6609-6701)
[»] chr7 (1 HSPs)
chr7 (137-203)||(27517252-27517318)


Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 6 - 273
Target Start/End: Original strand, 26399904 - 26400171
Alignment:
Q  6 acgcttaacataagcgcttatcatataagtacttatgtgtaagctatttattgtataacaaaagatccgacatagtaaaactgttttcatacaaactata 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26399904 acgcttaacataagcgcttatcatataagtacttatgtgtaagctatttattgtataacaaaagatccgacatagtaaagctgttttcatacaaactata 26400003  T
Q  106 aataacttttttcataagctacaatgaaaagttatggacatgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagtata 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26400004 aataacttttttcataagctacaatgaaaagttatggacatgtcatgaattgattacataagctctctcaaacaatctcacaagttattatgctagtata 26400103  T
Q  206 taatcttaaataagcaaatccaaacagaccctaagtcaaattataacaatattaaccctaactctgtg 273  Q
    |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  26400104 taatctcaaataagcaaatccaaacagatcctaagtcaaattataacaatattaaccctaactatgtg 26400171  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 21002249 - 21002306
Alignment:
Q  174 caaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaaca 231  Q
    |||||| ||||||||||| |||||| |||| |||| || |||||||| ||||||||||    
T  21002249 caaacagtctcacaagttcttatgcaagtagataagctcaaataagccaatccaaaca 21002306  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 137 - 237
Target Start/End: Original strand, 9700058 - 9700158
Alignment:
Q  137 ttatggacatgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacagaccc 236  Q
    ||||||||||||||| |||||||| || || |||||||||| | ||||||||||  ||||||||||| |||| || |||||||  ||||||||||| |||    
T  9700058 ttatggacatgtcataaattgatttcacaagctctctcaaatagtctcacaagtgtttatgctagtagataagctcaaataagttaatccaaacaggccc 9700157  T
Q  237 t 237  Q
    |    
T  9700158 t 9700158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 14929332 - 14929295
Alignment:
Q  14 cataagcgcttatcatataagtacttatgtgtaagcta 51  Q
    |||||||||||||||||||||||||||||| |||||||    
T  14929332 cataagcgcttatcatataagtacttatgtataagcta 14929295  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 232
Target Start/End: Original strand, 16162851 - 16162912
Alignment:
Q  171 tctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacag 232  Q
    ||||||||| ||||||||||  ||||||||||| |||| || |||||||| |||||||||||    
T  16162851 tctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacag 16162912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 31875714 - 31875672
Alignment:
Q  14 cataagcgcttatcatataagtacttatgtgtaagctatttat 56  Q
    |||||||||||||||||||||| ||||| | ||||||||||||    
T  31875714 cataagcgcttatcatataagtgcttatctataagctatttat 31875672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 233
Target Start/End: Complemental strand, 6918188 - 6918124
Alignment:
Q  169 tctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacaga 233  Q
    ||||||| |||||| |||||||  |||| ||||||| |||||||||||| |  ||||||||||||    
T  6918188 tctctcacacaatcccacaagtgcttatactagtatttaatcttaaataggtcaatccaaacaga 6918124  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 228
Target Start/End: Original strand, 8629201 - 8629261
Alignment:
Q  168 ctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaa 228  Q
    ||||||||| || ||||||||||  |||||| ||||  ||| |||||||||||||||||||    
T  8629201 ctctctcaagcagtctcacaagtgcttatgccagtaggtaagcttaaataagcaaatccaa 8629261  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 43115110 - 43115213
Alignment:
Q  134 aagttatggacatgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacaga 233  Q
    |||||||||||||||||| | ||| || ||||| ||||  ||||||||||||||||| ||||||  | || |||| |||| ||||||||||| ||||||     
T  43115110 aagttatggacatgtcataagttgtttccataaactcttccaaacaatctcacaagtgattatgtcaatagataaccttatataagcaaatcaaaacagg 43115209  T
Q  234 ccct 237  Q
    ||||    
T  43115210 ccct 43115213  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 44014777 - 44014716
Alignment:
Q  171 tctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacag 232  Q
    ||||||||| ||||||||||  ||||||||||| |||| || |||||||| |||||||||||    
T  44014777 tctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacag 44014716  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 28843012 - 28842972
Alignment:
Q  14 cataagcgcttatcatataagtacttatgtgtaagctattt 54  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  28843012 cataagcgcttatcatataagtgcttatgtataagctattt 28842972  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 142 - 233
Target Start/End: Complemental strand, 49605859 - 49605768
Alignment:
Q  142 gacatgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacaga 233  Q
    |||||||||| | ||| || ||| | |||||||||||| ||||||||||  ||||||||| | |||| || |||||| | ||||||||||||    
T  49605859 gacatgtcataagttgtttccatgaactctctcaaacactctcacaagtacttatgctagaagataaactcaaataaactaatccaaacaga 49605768  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 57
Target Start/End: Original strand, 31075610 - 31075652
Alignment:
Q  15 ataagcgcttatcatataagtacttatgtgtaagctatttatt 57  Q
    |||||||||| |||||||||||||||| | |||||||||||||    
T  31075610 ataagcgcttgtcatataagtacttatatataagctatttatt 31075652  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 54
Target Start/End: Original strand, 48528495 - 48528533
Alignment:
Q  16 taagcgcttatcatataagtacttatgtgtaagctattt 54  Q
    |||| ||||||||||||||||||||||| ||||||||||    
T  48528495 taagagcttatcatataagtacttatgtataagctattt 48528533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 239
Target Start/End: Complemental strand, 25459606 - 25459541
Alignment:
Q  174 caaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacagaccctaa 239  Q
    |||||||||||||||||  ||||||||||  |||| || ||||||   ||||||||||||||||||    
T  25459606 caaacaatctcacaagtgcttatgctagttgataagctcaaataaatcaatccaaacagaccctaa 25459541  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Original strand, 36200030 - 36200075
Alignment:
Q  11 taacataagcgcttatcatataagtacttatgtgtaagctatttat 56  Q
    ||||||||| ||||||||||||||| ||||||| | ||||||||||    
T  36200030 taacataagagcttatcatataagttcttatgtatcagctatttat 36200075  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 139 - 183
Target Start/End: Complemental strand, 29600746 - 29600702
Alignment:
Q  139 atggacatgtcatgaattgattacataatctctctcaaacaatct 183  Q
    ||||||||||||| ||||| || ||||| ||||||||||||||||    
T  29600746 atggacatgtcataaattgttttcataaactctctcaaacaatct 29600702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 44284213 - 44284173
Alignment:
Q  14 cataagcgcttatcatataagtacttatgtgtaagctattt 54  Q
    |||||||| |||||||||||||||| |||| ||||||||||    
T  44284213 cataagcgattatcatataagtactaatgtataagctattt 44284173  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 2460159 - 2460069
Alignment:
Q  142 gacatgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacag 232  Q
    |||||||||| | ||| || ||||| |||||||||||| ||||||||||  |||||||||| ||||| || |||||||  |||||||||||    
T  2460159 gacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatccaaacag 2460069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 71
Target Start/End: Complemental strand, 741020 - 740966
Alignment:
Q  17 aagcgcttatcatataagtacttatgtgtaagctatttattgtataacaaaagat 71  Q
    ||||| ||||||||||| | ||||||| |||||||||| || |||||||||||||    
T  741020 aagcgtttatcatataaatgcttatgtataagctattttttctataacaaaagat 740966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 137 - 241
Target Start/End: Complemental strand, 281861 - 281757
Alignment:
Q  137 ttatggacatgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacagaccc 236  Q
    |||| |||||||||| | ||| || ||| | ||||| |||||| ||||||||||  |||||  | || ||||||| || ||||  |||||||||||||||    
T  281861 ttatagacatgtcataagttgcttccattagctctcccaaacagtctcacaagtacttatgtcactacataatctcaagtaagtcaatccaaacagaccc 281762  T
Q  237 taagt 241  Q
    |||||    
T  281761 taagt 281757  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 232
Target Start/End: Complemental strand, 27123360 - 27123270
Alignment:
Q  142 gacatgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacag 232  Q
    |||||||||| | ||| || ||||| |||||||||||| ||||||||||  |||||||||| ||||| || |||||||  |||||||||||    
T  27123360 gacatgtcataagttgtttccataagctctctcaaacagtctcacaagtacttatgctagtttataagctcaaataagttaatccaaacag 27123270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 28615428 - 28615490
Alignment:
Q  174 caaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacagaccc 236  Q
    |||||||||||||||||  ||||||||||| |||| ||||||||||  |||||||||||||||    
T  28615428 caaacaatctcacaagtgtttatgctagtagataaacttaaataagtcaatccaaacagaccc 28615490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 6428075 - 6428176
Alignment:
Q  137 ttatggacatgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacagaccc 236  Q
    ||||||||||||||| | ||| || |||||||||||||||||  ||||||||||  |||| | | ||||||| || |||||||  ||| |||||| ||||    
T  6428075 ttatggacatgtcataagttgttttcataatctctctcaaactgtctcacaagtgcttataccaatatataagctcaaataagtcaattcaaacaaaccc 6428174  T
Q  237 ta 238  Q
    ||    
T  6428175 ta 6428176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 15 - 53
Target Start/End: Original strand, 54414865 - 54414903
Alignment:
Q  15 ataagcgcttatcatataagtacttatgtgtaagctatt 53  Q
    ||||||||||||||||||||| ||||||| |||||||||    
T  54414865 ataagcgcttatcatataagtgcttatgtataagctatt 54414903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 137 - 234
Target Start/End: Original strand, 11264358 - 11264455
Alignment:
Q  137 ttatggacatgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacagac 234  Q
    ||||||||||||||| | ||||||  |||  ||||| |||||| |||||||  |  ||||||||||| |||  || |||||||| |||||||||||||    
T  11264358 ttatggacatgtcataagttgattctatatgctctcccaaacagtctcacagatgtttatgctagtagatagactcaaataagccaatccaaacagac 11264455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 238
Target Start/End: Complemental strand, 35571588 - 35571543
Alignment:
Q  193 ttatgctagtatataatcttaaataagcaaatccaaacagacccta 238  Q
    ||||||||||| |||| || |||||||| |||||||||||||||||    
T  35571588 ttatgctagtagataagctcaaataagccaatccaaacagacccta 35571543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Complemental strand, 2980630 - 2980586
Alignment:
Q  10 ttaacataagcgcttatcatataagtacttatgtgtaagctattt 54  Q
    |||||||||| | ||||||||||||| ||||||| ||||||||||    
T  2980630 ttaacataagtgtttatcatataagtgcttatgtataagctattt 2980586  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 24193500 - 24193540
Alignment:
Q  14 cataagcgcttatcatataagtacttatgtgtaagctattt 54  Q
    ||||| |||||||||||||||||||||||| |||| |||||    
T  24193500 cataaacgcttatcatataagtacttatgtataagttattt 24193540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 237
Target Start/End: Original strand, 47399574 - 47399642
Alignment:
Q  169 tctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacagaccct 237  Q
    |||||||| || ||||||||||| |||||| |||||||||  | |||||||  ||| ||||||||||||    
T  47399574 tctctcaatcagtctcacaagtttttatgccagtatataagttcaaataagttaattcaaacagaccct 47399642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 32172710 - 32172791
Alignment:
Q  137 ttatggacatgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataa 218  Q
    ||||||||||||||| | ||| || ||||| ||||| ||||| |||||||||||  |||||||||||||||| || ||||||    
T  32172710 ttatggacatgtcataagttgtttccataagctctcccaaactatctcacaagtgcttatgctagtatataagctcaaataa 32172791  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 137 - 232
Target Start/End: Complemental strand, 25720430 - 25720335
Alignment:
Q  137 ttatggacatgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacag 232  Q
    ||||| ||||||||||||||| ||  |||| |||||||| ||| ||||||||||  |||||| |||| |||| || |||||||| ||| |||||||    
T  25720430 ttatgaacatgtcatgaattgtttttataagctctctcagacagtctcacaagtgcttatgccagtagataacctcaaataagctaattcaaacag 25720335  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 26516213 - 26516253
Alignment:
Q  14 cataagcgcttatcatataagtacttatgtgtaagctattt 54  Q
    |||||||||||||||||||||| ||||||| ||||||||||    
T  26516213 cataagcgcttatcatataagtgcttatgtataagctattt 26516253  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 40534109 - 40534149
Alignment:
Q  14 cataagcgcttatcatataagtacttatgtgtaagctattt 54  Q
    ||||||||||||||||||||| |||||||| ||||||||||    
T  40534109 cataagcgcttatcatataaggacttatgtataagctattt 40534149  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 10391436 - 10391499
Alignment:
Q  174 caaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacagaccct 237  Q
    ||||||||||||||||| ||||||| || | |||| ||||||||||| |||| |||||| ||||    
T  10391436 caaacaatctcacaagtgattatgccagcagataagcttaaataagccaatcgaaacaggccct 10391499  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 170 - 229
Target Start/End: Complemental strand, 10771868 - 10771809
Alignment:
Q  170 ctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaa 229  Q
    |||||||||||||||||||||  |||||| |||| |||| || |||||||| ||||||||    
T  10771868 ctctcaaacaatctcacaagtgcttatgccagtagataagctcaaataagccaatccaaa 10771809  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Complemental strand, 6738554 - 6738522
Alignment:
Q  22 cttatcatataagtacttatgtgtaagctattt 54  Q
    |||||||||||||||||||||| ||||||||||    
T  6738554 cttatcatataagtacttatgtataagctattt 6738522  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 241
Target Start/End: Complemental strand, 11095476 - 11095404
Alignment:
Q  169 tctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacagaccctaagt 241  Q
    ||||||||||||| ||||||||  |||||  |||| |||| ||||||||| | | |||||||||||| |||||    
T  11095476 tctctcaaacaatatcacaagtgtttatgtcagtagataagcttaaataaaccagtccaaacagaccttaagt 11095404  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 19094001 - 19093961
Alignment:
Q  14 cataagcgcttatcatataagtacttatgtgtaagctattt 54  Q
    ||||||||||||||||||||| | |||| ||||||||||||    
T  19094001 cataagcgcttatcatataagcatttatatgtaagctattt 19093961  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 54
Target Start/End: Complemental strand, 20982290 - 20982250
Alignment:
Q  14 cataagcgcttatcatataagtacttatgtgtaagctattt 54  Q
    |||||| ||||||||||||||| ||||||| ||||||||||    
T  20982290 cataagtgcttatcatataagtgcttatgtataagctattt 20982250  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 36539669 - 36539701
Alignment:
Q  22 cttatcatataagtacttatgtgtaagctattt 54  Q
    |||||||||||||| ||||||||||||||||||    
T  36539669 cttatcatataagtgcttatgtgtaagctattt 36539701  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 36774839 - 36774799
Alignment:
Q  16 taagcgcttatcatataagtacttatgtgtaagctatttat 56  Q
    ||||||||||| |||||||||||||||| ||||| ||||||    
T  36774839 taagcgcttatgatataagtacttatgtataagccatttat 36774799  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 6547971 - 6548044
Alignment:
Q  162 cataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacagacc 235  Q
    ||||| ||| |||||||| ||||||||||| ||||||||||| |||| ||| ||||||  ||||||||||||||    
T  6547971 cataagctccctcaaacagtctcacaagttcttatgctagtagataagcttgaataagtcaatccaaacagacc 6548044  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 162 - 231
Target Start/End: Original strand, 11513978 - 11514047
Alignment:
Q  162 cataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaaca 231  Q
    ||||| |||||| ||||| ||||||||||  ||||||||||| ||||||| |||||| | ||||||||||    
T  11513978 cataagctctctaaaacagtctcacaagtgcttatgctagtagataatctcaaataaaccaatccaaaca 11514047  T

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Target: scaffold0459 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0459
Description:

Target: scaffold0459; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 6611 - 6703
Alignment:
Q  145 atgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacagaccct 237  Q
    ||||||| | ||| || |||||||||||||||||  |||||||||| ||||| | | ||||||| || |||||||  |||||||||| |||||    
T  6611 atgtcataacttgttttcataatctctctcaaactgtctcacaagtgattataccaatatataagctcaaataagtcaatccaaacaaaccct 6703  T

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Target: scaffold0366 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0366
Description:

Target: scaffold0366; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 145 - 237
Target Start/End: Original strand, 6609 - 6701
Alignment:
Q  145 atgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagtatataatcttaaataagcaaatccaaacagaccct 237  Q
    ||||||| | ||| || |||||||||||||||||  |||||||||| ||||| | | ||||||| || |||||||  |||||||||| |||||    
T  6609 atgtcataacttgttttcataatctctctcaaactgtctcacaagtgattataccaatatataagctcaaataagtcaatccaaacaaaccct 6701  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 27517318 - 27517252
Alignment:
Q  137 ttatggacatgtcatgaattgattacataatctctctcaaacaatctcacaagttattatgctagta 203  Q
    |||||||||||| |||| | | || ||||| |||||||||||| |||||||||| ||||||| ||||    
T  27517318 ttatggacatgttatgagtggtttccataaactctctcaaacagtctcacaagtaattatgccagta 27517252  T

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