View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10186_low_19 (Length: 278)
Name: NF10186_low_19
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10186_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 43181688 - 43181427
Alignment:
| Q |
1 |
aagtttgtgggatttgtacgagagatggagaagtcaccacacagttactcgaagccttgatgagaagaataatcgttttaacgtgttcaaagccaatgtt |
100 |
Q |
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| T |
43181688 |
aagtttgtgggatttgtacgagagatggagaagtcaccacacagttactcgaagccttgatgagaagaataatcgttttaacgtgttcaaagccaatgtt |
43181589 |
T |
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| Q |
101 |
atgcatgttcataataccaataaattagataaaccttataagcttaagttgaataagtttgctgacatgactaattacgaatttaggagcatctatgctg |
200 |
Q |
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| T |
43181588 |
atgcatgttcataataccaataaattagataaaccttataagcttaagttgaataagtttgctgacatgactaattacgaatttaggagcatctatgctg |
43181489 |
T |
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| Q |
201 |
attctaaggttaatcaccatagaatgttccgtggcatgtcacatgacaatgggccgttcatg |
262 |
Q |
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| T |
43181488 |
attctaaggttaatcaccatagaatgttccgtggcatgtcacatgacaatgggccgttcatg |
43181427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 5 - 236
Target Start/End: Complemental strand, 34312839 - 34312608
Alignment:
| Q |
5 |
ttgtgggatttgtacgagagatggagaagtcaccacacagttactcgaagccttgatgagaagaataatcgttttaacgtgttcaaagccaatgttatgc |
104 |
Q |
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| T |
34312839 |
ttgtgggacttatacgagagatggaggagtcatcacacggtttctcggaacctcaacgagaaacaaaagcgctttaacgtgttcaaatcaaatgtgatgc |
34312740 |
T |
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| Q |
105 |
atgttcataataccaataaattagataaaccttataagcttaagttgaataagtttgctgacatgactaattacgaatttaggagcatctatgctgattc |
204 |
Q |
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| T |
34312739 |
atgtccacaacactaacaaaatggataagccttacaagttgaaacttaacaagtttgccgacatgaccaaccatgaatttaagactacctatgctggatc |
34312640 |
T |
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| Q |
205 |
taaggttaatcaccatagaatgttccgtggca |
236 |
Q |
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| T |
34312639 |
aaaggttaatcaccacagaatgttccgaggca |
34312608 |
T |
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