View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10186_low_20 (Length: 256)
Name: NF10186_low_20
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10186_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 12600476 - 12600708
Alignment:
| Q |
1 |
cttagtaatattaaacaagtttggaagaaaaccacgatataacaaagcactggtatttcataccattcgaaatcatttcaaacacaagtatctcactcaa |
100 |
Q |
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| T |
12600476 |
cttagtaatattaaacaagtttggaagaaaaccaagatataacaaagcactggcgtttcataccattcgaaatcatttcaaacacaagtatctcactcaa |
12600575 |
T |
|
| Q |
101 |
tggctcaatatttgtgctagttgatgggtcaacttcaatagtacttgatggctcaacttcggtagcaatagattgatcatatattagataaacagcagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12600576 |
tggctcaatatttgtgctagttgatgggtcaacttcaatagtacttgatggctcaacttcggtagcaatagattgatcatatattagataaacagcagtt |
12600675 |
T |
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| Q |
201 |
tcttttagattgtagttatttacttcactcccc |
233 |
Q |
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||||||||||||||||||| ||||||||||||| |
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| T |
12600676 |
tcttttagattgtagttatgtacttcactcccc |
12600708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 99 - 202
Target Start/End: Complemental strand, 15805143 - 15805040
Alignment:
| Q |
99 |
aatggctcaatatttgtgctagttgatgggtcaacttcaatagtacttgatggctcaacttcggtagcaatagattgatcatatattagataaacagcag |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |
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| T |
15805143 |
aatggctcaatatttgtgctagttgatgggtcaacttcaatagtacttgatggctcaacttccgtagaaatagattgatcatatattagataaaccgcag |
15805044 |
T |
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| Q |
199 |
tttc |
202 |
Q |
| |
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|||| |
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| T |
15805043 |
tttc |
15805040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 15806213 - 15806119
Alignment:
| Q |
3 |
tagtaatattaaacaagtttggaagaaaaccacgatataacaaagcactggtatttcataccattcgaaatcatttcaaacacaagtatctcactc |
98 |
Q |
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| T |
15806213 |
tagtagtataaaacaagtttggaagaaaaccaagatataacaaagcactggcatttcataccattcaaaatcatttcaaacacaa-tatctcactc |
15806119 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 98 - 202
Target Start/End: Complemental strand, 3366181 - 3366077
Alignment:
| Q |
98 |
caatggctcaatatttgtgctagttgatgggtcaacttcaatagtacttgatggctcaacttcggtagcaatagattgatcatatattagataaacagca |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
3366181 |
caatggctcaatatttgtgctagttgatgggtcaacttcaatagtacttgaaggctcaacttccgtagcaatagattgatcatatattagataaacagca |
3366082 |
T |
|
| Q |
198 |
gtttc |
202 |
Q |
| |
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||||| |
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|
| T |
3366081 |
gtttc |
3366077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 100
Target Start/End: Complemental strand, 3321205 - 3321108
Alignment:
| Q |
3 |
tagtaatattaaacaagtttggaagaaaaccacgatataacaaagcactggtatttcataccattcgaaatcatttcaaacacaagtatctcactcaa |
100 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||| |||| |||||||||| |
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| T |
3321205 |
tagtagtattaaacaagtttggaagaaaaccaagatataacaaagcaccggcgattcataccattcaaaatcatttcaaacagaagtgtctcactcaa |
3321108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 9 - 84
Target Start/End: Complemental strand, 3367072 - 3366997
Alignment:
| Q |
9 |
tattaaacaagtttggaagaaaaccacgatataacaaagcactggtatttcataccattcgaaatcatttcaaaca |
84 |
Q |
| |
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||||||||||||||||||||| |||| ||||||||||||||| || |||||||||||||||||||||| ||||| |
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| T |
3367072 |
tattaaacaagtttggaagaagaccaagatataacaaagcaccggcgcttcataccattcgaaatcatttgaaaca |
3366997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 3319737 - 3319670
Alignment:
| Q |
123 |
gatgggtcaacttcaatagtacttgatggctcaacttcggtagcaatagattgatcatatattagata |
190 |
Q |
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|||||||||||||| |||||| |||||| ||||| ||| ||||| | || ||||||||||||||||| |
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| T |
3319737 |
gatgggtcaacttccatagtatttgatgactcaatttccatagcatttgactgatcatatattagata |
3319670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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