View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10186_low_22 (Length: 251)
Name: NF10186_low_22
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10186_low_22 |
 | |
|
| [»] chr6 (3 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 12 - 251
Target Start/End: Original strand, 6934538 - 6934779
Alignment:
| Q |
12 |
caaaggatccaacaattctcttaagtcatatgtctcaaac--caccggtcttcattagctttctttgatgtaggcttaattatttcaatccaaatttctt |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6934538 |
caaaggatccaacaattctcttaagtcatatgtctcaaacaccactggtcttcattagctttctttgatgtaggcttaactatttcaatccaaatttctt |
6934637 |
T |
|
| Q |
110 |
tatcttcttattatctttgatgtgtatagaaattgaatatgttcagttatattgcaatttgcaatggctgctatactactgaactattaattttggcatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6934638 |
tatcttcttattatctttgatgtgtatagaaattgaatatgttcaggtatattgcaatttgcaaaggctgctatactactgaactattaattttggcatg |
6934737 |
T |
|
| Q |
210 |
agcttagaaatttataccattgtaccattcacataaaagctc |
251 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
6934738 |
agcttagaaatttataccattgtaccatacacataaaagctc |
6934779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 6947188 - 6947245
Alignment:
| Q |
64 |
ttagctttctttgatgtaggcttaattatttcaatccaaatttctttatcttcttattatct |
125 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
6947188 |
ttagctttctttgatgtaggctta----tttcaatccaaatttctatatcttcttattatct |
6947245 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 182 - 248
Target Start/End: Original strand, 6947370 - 6947436
Alignment:
| Q |
182 |
atactactgaactattaattttggcatgagcttagaaatttataccattgtaccattcacataaaag |
248 |
Q |
| |
|
|||||| ||||||| ||||| | |||| |||||||||| ||||||||||||||||| ||||| |||| |
|
|
| T |
6947370 |
atactattgaactactaattatagcatcagcttagaaacttataccattgtaccatacacatcaaag |
6947436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University