View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10186_low_25 (Length: 248)

Name: NF10186_low_25
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10186_low_25
NF10186_low_25
[»] chr6 (6 HSPs)
chr6 (121-219)||(21200544-21200641)
chr6 (182-241)||(21144536-21144595)
chr6 (21-75)||(21242092-21242146)
chr6 (68-226)||(21156842-21156999)
chr6 (168-231)||(33709815-33709878)
chr6 (73-157)||(21185050-21185133)


Alignment Details
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 219
Target Start/End: Original strand, 21200544 - 21200641
Alignment:
Q  121 ctttgtcaacatgtgtataagggtattttataggtaattgtcttctaggttgtttcagaattttctatgtgggactatcaaaaccaaacaattttatgt 219  Q
    |||||||||||||| || | |||| |||||||||||||| |||||| |||||||||||||||||| |||||||||||||| | |||||| |||||||||    
T  21200544 ctttgtcaacatgtatacatgggt-ttttataggtaattttcttcttggttgtttcagaattttcgatgtgggactatcatatccaaactattttatgt 21200641  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 21144536 - 21144595
Alignment:
Q  182 tttctatgtgggactatcaaaaccaaacaattttatgtgttttgttcttcatctctgctc 241  Q
    |||||| ||||||||||||||||||||||||||||||||| || ||||||||| ||||||    
T  21144536 tttctacgtgggactatcaaaaccaaacaattttatgtgtctttttcttcatccctgctc 21144595  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 21 - 75
Target Start/End: Complemental strand, 21242146 - 21242092
Alignment:
Q  21 aaatcaataaaccaaaagttattactagtaaactaaacagttatataaattaagt 75  Q
    ||||||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  21242146 aaatcaattgaccaaaagttattactagtaaactaaacagttaaataaattaagt 21242092  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 226
Target Start/End: Original strand, 21156842 - 21156999
Alignment:
Q  68 aattaagttaagtggacaacacaattattaataattgggtccaaactgttttactttgtcaacatgtgtataagggtattttataggtaattgt-cttct 166  Q
    ||||||||||| ||||||||||| | |  ||  ||||||||| |||| || ||||||| ||| | || |  |||| |||||||||||||||| | | |||    
T  21156842 aattaagttaaatggacaacacagtga--aaagattgggtccgaacttttatactttggcaagaagtattaaaggatattttataggtaattcttcctct 21156939  T
Q  167 aggttgtttcagaattttctatgtgggactatcaaaaccaaacaattttatgtgttttgt 226  Q
     |||||||| ||||| ||| ||||||||||||  ||||||||| ||| ||| ||| ||||    
T  21156940 tggttgttttagaatcttcgatgtgggactatttaaaccaaactattctatatgtcttgt 21156999  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 231
Target Start/End: Original strand, 33709815 - 33709878
Alignment:
Q  168 ggttgtttcagaattttctatgtgggactatcaaaaccaaacaattttatgtgttttgttcttc 231  Q
    |||| |||||| | |||| |||||||||||| ||||| |||| ||||||| |||||||||||||    
T  33709815 ggttatttcagcactttcgatgtgggactattaaaacaaaactattttatatgttttgttcttc 33709878  T

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Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 21185050 - 21185133
Alignment:
Q  73 agttaagtggacaacacaattattaataattgggtccaaactgttttactttgtcaacatgtgtataagggtattttataggtaa 157  Q
    ||||||||||||||||||||    ||| ||||||||| ||||||| ||||| | |||||||  || |||||| ||||||||||||    
T  21185050 agttaagtggacaacacaatgcg-aattattgggtccgaactgttatacttcggcaacatgcatacaagggtcttttataggtaa 21185133  T

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