View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10186_low_26 (Length: 245)

Name: NF10186_low_26
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10186_low_26
NF10186_low_26
[»] chr2 (5 HSPs)
chr2 (1-224)||(28248994-28249217)
chr2 (170-224)||(12873756-12873810)
chr2 (129-224)||(5109355-5109450)
chr2 (189-224)||(2936345-2936380)
chr2 (166-224)||(38554519-38554577)
[»] chr4 (5 HSPs)
chr4 (170-224)||(28020538-28020592)
chr4 (170-224)||(53225705-53225759)
chr4 (179-223)||(696412-696456)
chr4 (179-223)||(764710-764754)
chr4 (176-224)||(43117915-43117963)
[»] chr5 (1 HSPs)
chr5 (187-224)||(3814032-3814069)
[»] chr8 (2 HSPs)
chr8 (189-224)||(7693094-7693129)
chr8 (170-224)||(10839796-10839850)
[»] chr3 (4 HSPs)
chr3 (189-224)||(51723430-51723465)
chr3 (170-224)||(25910252-25910306)
chr3 (168-205)||(55121250-55121287)
chr3 (180-224)||(47720712-47720756)
[»] chr7 (2 HSPs)
chr7 (190-224)||(30823762-30823796)
chr7 (189-217)||(29365689-29365717)
[»] chr1 (1 HSPs)
chr1 (179-224)||(27069189-27069234)


Alignment Details
Target: chr2 (Bit Score: 136; Significance: 5e-71; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 28249217 - 28248994
Alignment:
Q  1 attaaagattgagattagtcaaatttgagaggattttcattgtcatccaagcttatggatcggtcttttaagatgttcaaaaccgacttataaacagaat 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28249217 attaaagattgacattagtcaaatttgagaggattttcattgtcatccaagcttatggatcggtcttttaagatgttcaaaaccgacttataaacagaat 28249118  T
Q  101 tgttgtattcgattaaggagtcattacttatataatactcattccgatcctatttatnnnnnnnngttaactttctacatttattaaataattaatgtat 200  Q
    |||||||||||||||  ||||| |||||||||| ||| |   |||  | ||||||||        ||| ||||| || ||| ||||||||||||||||||    
T  28249117 tgttgtattcgattactgagtctttacttatatgatatttcctccagttctatttataagaaaaagttgactttttagattcattaaataattaatgtat 28249018  T
Q  201 ttggtatagaatatagactaaata 224  Q
    ||||||||||||||||||||||||    
T  28249017 ttggtatagaatatagactaaata 28248994  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 12873756 - 12873810
Alignment:
Q  170 actttctacatttattaaataattaatgtatttggtatagaatatagactaaata 224  Q
    ||||| || ||| ||||| ||||||||||||||||||||||||||||||||||||    
T  12873756 actttttagattcattaagtaattaatgtatttggtatagaatatagactaaata 12873810  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 224
Target Start/End: Original strand, 5109355 - 5109450
Alignment:
Q  129 tatataatactcattccgatcctatttatnnnnnnnngttaactttctacatttattaaataattaatgtatttggtatagaatatagactaaata 224  Q
    ||||||||||||  |||| ||||||||||        ||||||||| || ||| ||| | |||||||||||||||||||||||||||| |||||||    
T  5109355 tatataatactctctccggtcctatttataagaaaaagttaactttttagattcattgagtaattaatgtatttggtatagaatataggctaaata 5109450  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 2936345 - 2936380
Alignment:
Q  189 taattaatgtatttggtatagaatatagactaaata 224  Q
    ||||||||||| ||||||||||||||||||||||||    
T  2936345 taattaatgtacttggtatagaatatagactaaata 2936380  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 38554577 - 38554519
Alignment:
Q  166 gttaactttctacatttattaaataattaatgtatttggtatagaatatagactaaata 224  Q
    ||||||||| || ||| ||| | ||||||||||| |||||||||||||||||| |||||    
T  38554577 gttaactttttaaattcattgagtaattaatgtacttggtatagaatatagaccaaata 38554519  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 28020592 - 28020538
Alignment:
Q  170 actttctacatttattaaataattaatgtatttggtatagaatatagactaaata 224  Q
    ||||| || ||||||||| |||||||||||||| ||||||||||||||| |||||    
T  28020592 actttttaaatttattaagtaattaatgtatttagtatagaatatagaccaaata 28020538  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 53225759 - 53225705
Alignment:
Q  170 actttctacatttattaaataattaatgtatttggtatagaatatagactaaata 224  Q
    ||||| || ||| ||| |||||||||||||||||||||||||| ||||| |||||    
T  53225759 actttttagattcattgaataattaatgtatttggtatagaatgtagaccaaata 53225705  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 696456 - 696412
Alignment:
Q  179 atttattaaataattaatgtatttggtatagaatatagactaaat 223  Q
    |||||||| ||||||||||||| | || |||||||||||||||||    
T  696456 atttattatataattaatgtatcttgtttagaatatagactaaat 696412  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 179 - 223
Target Start/End: Complemental strand, 764754 - 764710
Alignment:
Q  179 atttattaaataattaatgtatttggtatagaatatagactaaat 223  Q
    |||||||| ||||||||||||| | || |||||||||||||||||    
T  764754 atttattatataattaatgtatcttgtttagaatatagactaaat 764710  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 176 - 224
Target Start/End: Complemental strand, 43117963 - 43117915
Alignment:
Q  176 tacatttattaaataattaatgtatttggtatagaatatagactaaata 224  Q
    |||||| ||| ||||||| |||||||||||||| ||||||||| |||||    
T  43117963 tacattcattgaataattgatgtatttggtataaaatatagaccaaata 43117915  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 3814069 - 3814032
Alignment:
Q  187 aataattaatgtatttggtatagaatatagactaaata 224  Q
    ||||||||||||| ||||||||||||||||||||||||    
T  3814069 aataattaatgtacttggtatagaatatagactaaata 3814032  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Complemental strand, 7693129 - 7693094
Alignment:
Q  189 taattaatgtatttggtatagaatatagactaaata 224  Q
    |||||||||||||||||||| |||||||||||||||    
T  7693129 taattaatgtatttggtataaaatatagactaaata 7693094  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 10839796 - 10839850
Alignment:
Q  170 actttctacatttattaaataattaatgtatttggtatagaatatagactaaata 224  Q
    ||||| || ||| ||| ||||||||||||| |||||||||||||||||| |||||    
T  10839796 actttttagattcattgaataattaatgtacttggtatagaatatagaccaaata 10839850  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 51723430 - 51723465
Alignment:
Q  189 taattaatgtatttggtatagaatatagactaaata 224  Q
    ||||||||||||||| ||||||||||||||||||||    
T  51723430 taattaatgtatttgatatagaatatagactaaata 51723465  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 224
Target Start/End: Complemental strand, 25910306 - 25910252
Alignment:
Q  170 actttctacatttattaaataattaatgtatttggtatagaatatagactaaata 224  Q
    ||||| || ||||||| | ||||||||||||||||| |||||||||||| |||||    
T  25910306 actttttaaatttattgagtaattaatgtatttggtgtagaatatagaccaaata 25910252  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 205
Target Start/End: Complemental strand, 55121287 - 55121250
Alignment:
Q  168 taactttctacatttattaaataattaatgtatttggt 205  Q
    ||||||| || |||||||||||||||||||||||||||    
T  55121287 taactttttagatttattaaataattaatgtatttggt 55121250  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 47720712 - 47720756
Alignment:
Q  180 tttattaaataattaatgtatttggtatagaatatagactaaata 224  Q
    |||||| ||| ||||||||||||||||||||||||| || |||||    
T  47720712 tttattgaattattaatgtatttggtatagaatataaaccaaata 47720756  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 224
Target Start/End: Original strand, 30823762 - 30823796
Alignment:
Q  190 aattaatgtatttggtatagaatatagactaaata 224  Q
    ||||||||||||||||||||||||||||| |||||    
T  30823762 aattaatgtatttggtatagaatatagaccaaata 30823796  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 189 - 217
Target Start/End: Complemental strand, 29365717 - 29365689
Alignment:
Q  189 taattaatgtatttggtatagaatataga 217  Q
    |||||||||||||||||||||||||||||    
T  29365717 taattaatgtatttggtatagaatataga 29365689  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 224
Target Start/End: Original strand, 27069189 - 27069234
Alignment:
Q  179 atttattaaataattaatgtatttggtatagaatatagactaaata 224  Q
    ||||||||| |||||||| |||||| | ||||||||||||||||||    
T  27069189 atttattaactaattaatttatttgatttagaatatagactaaata 27069234  T

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