View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10186_low_35 (Length: 228)
Name: NF10186_low_35
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10186_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 159; Significance: 8e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 3524425 - 3524618
Alignment:
| Q |
17 |
acataatactatgtttactcttcaaaagcaaccaaagatccgannnnnnnncaaacctaagacctcctctttagtaagaccctcttattcatat--ttga |
114 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
3524425 |
acataatactatgtttactcttcaaaagcaaccaaagatccgattttttttcaaacctaagacctcctctttagtaagaccctcttattcatatatttga |
3524524 |
T |
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| Q |
115 |
agtctagagttgctatatacgtcaagcccattgattttctcctccaaatccccatacacttttcagttccacttcttgatttcaccctttatca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3524525 |
agtctagagttgctatatacgtcaagcccattgattttctcctccaaatccccatacacttttcagttccacttcttgatttcaccctttatca |
3524618 |
T |
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