View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10186_low_38 (Length: 215)

Name: NF10186_low_38
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10186_low_38
NF10186_low_38
[»] chr1 (1 HSPs)
chr1 (3-182)||(14934219-14934398)
[»] scaffold0075 (3 HSPs)
scaffold0075 (88-177)||(9850-9939)
scaffold0075 (88-177)||(11750-11839)
scaffold0075 (53-97)||(6796-6840)


Alignment Details
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 3 - 182
Target Start/End: Original strand, 14934219 - 14934398
Alignment:
Q  3 aagtctcttatatttttgttgatttttcatacnnnnnnngcttatactaaaaaatttatatttctacttcatgcagtagctaacatgatctacttagact 102  Q
    ||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14934219 aagtctcttatatttttgttgatttttcatactttttttgcttatactaaaaaatttatatttctacttcatgcagtagctaacatgatctacttagact 14934318  T
Q  103 ctcgaattggtgttggcttctcatattcagccaacaagtctgattatttccttgtgaatgaccaaattacaggttaattt 182  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14934319 ctccaattggtgttggcttctcatattcagccaacaagtctgattatttccttgtgaatgaccaaattacaggttaattt 14934398  T

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Target: scaffold0075 (Bit Score: 58; Significance: 1e-24; HSPs: 3)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 9850 - 9939
Alignment:
Q  88 tgatctacttagactctcgaattggtgttggcttctcatattcagccaacaagtctgattatttccttgtgaatgaccaaattacaggtt 177  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||| |||||||||||||||    ||||||||||||||||||||||||    
T  9850 tgatctacttagacactccaattggtgttggtttctcatattcagctaacaagtctgattatgcttttgtgaatgaccaaattacaggtt 9939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 88 - 177
Target Start/End: Original strand, 11750 - 11839
Alignment:
Q  88 tgatctacttagactctcgaattggtgttggcttctcatattcagccaacaagtctgattatttccttgtgaatgaccaaattacaggtt 177  Q
    |||||||||||||| ||| |||||||||||  |||||||||||||| |||||||||||||||  | ||||||||||||||||||||||||    
T  11750 tgatctacttagacactccaattggtgttgatttctcatattcagctaacaagtctgattatgcctttgtgaatgaccaaattacaggtt 11839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 53 - 97
Target Start/End: Original strand, 6796 - 6840
Alignment:
Q  53 aaaatttatatttctacttcatgcagtagctaacatgatctactt 97  Q
    ||||||||| ||||||| |  ||||||||||||||||||||||||    
T  6796 aaaatttatttttctacattttgcagtagctaacatgatctactt 6840  T

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