View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10186_low_4 (Length: 466)
Name: NF10186_low_4
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10186_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 144 - 452
Target Start/End: Complemental strand, 49876479 - 49876170
Alignment:
| Q |
144 |
ctacttaacttactcttgttttttagaatgataacttaacttacttgctggcaatttgttggattatgtagttagcgataactaacataataaactatat |
243 |
Q |
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| T |
49876479 |
ctacttaacttactcttgttttttagaatgataacttaacttacttgctggcaatttgttggattatgtagttagcgataactaacataataaactatat |
49876380 |
T |
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| Q |
244 |
atggtg-aagaatattagtttccacgtaaggaaatgtgttggttaatgataacttataacttccttgttggcaagttgttggattatgtatttagtttgt |
342 |
Q |
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| T |
49876379 |
atggtggaagaatattagtttccacgtaaggaaatgtgttggttaatgataacttataacttccttgttggcaagttgttggattatgtatttagtttgt |
49876280 |
T |
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| Q |
343 |
ataaatcaacatacatggatgtggatatgaatgatgacggaagtcccaaacattattagattagtagagattttcatttgttcaaattttgaactttcct |
442 |
Q |
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| T |
49876279 |
ataaatcaacatacatggatgtggatatgaatgatgacggaagtcccaaacattattagattagtagagattttcatttgttcaaattttgaactttcct |
49876180 |
T |
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| Q |
443 |
tctgtgctcc |
452 |
Q |
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| T |
49876179 |
tctgtgctcc |
49876170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 17 - 128
Target Start/End: Complemental strand, 49876625 - 49876516
Alignment:
| Q |
17 |
aaattgaagagatggttgattttgtgagtcacaggaacttgcacttgcatcatttttagaagaacaatggaatggaatggaaaggaaaataataataatg |
116 |
Q |
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| T |
49876625 |
aaattgaagagatggttgattttgtgagtcacaggaacttgcacttgcatcatttttagaagaacaatggaatggaaaggaaa--ataataataataatg |
49876528 |
T |
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| Q |
117 |
gtgatgatgatg |
128 |
Q |
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| T |
49876527 |
gtgatgatgatg |
49876516 |
T |
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