View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10186_low_5 (Length: 452)
Name: NF10186_low_5
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10186_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 410; Significance: 0; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 8 - 437
Target Start/End: Complemental strand, 31629449 - 31629020
Alignment:
| Q |
8 |
aagcagagacagaaatcaaacatatgtaatttcactaaagtaacttcaatttgtaatatcttgaaatgatacaatttttattgaagaatattagtagtga |
107 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31629449 |
aagcaaagacagaaatcaaacatatgtaatttcactaaagtaacttcaatttgtaatatcttgaaatgatacaatttttattgaagaaaattagtagtga |
31629350 |
T |
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| Q |
108 |
tgatgtggtgtctattttggactcttgacacatgcaggacaccggacactctttcaacaagaaatgtccgtaacacatgtcattttgattccaattacgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629349 |
tgatgtggtgtctattttggactcttgacacatgaaggacaccggacactctttcaacaagaaatgtccgtaacacatgtcattttgattccaattacgt |
31629250 |
T |
|
| Q |
208 |
gatttgataattagatcattaacaaataattcttatcataaaaagtaagaaaggaagcaaaactgaccagaaaattatgatataaaaatgctctaggctc |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629249 |
aatttgataattagatcattaacaaataattcttatcataaaaagtaagaaaggaaacaaaactgaccagaaaattatgatataaaaatgctctaggctc |
31629150 |
T |
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| Q |
308 |
ccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcatagaatatagatgagaaagagatgcaatcaatcataaagagagaataga |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31629149 |
ccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcatagaatatagatgagaaagagatgcaatcaatcataaagagagaataga |
31629050 |
T |
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| Q |
408 |
ataacacaaagaaagttgagttgaactgaa |
437 |
Q |
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| T |
31629049 |
ataacacaaagaaagttgagttgaactgaa |
31629020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 268 - 365
Target Start/End: Complemental strand, 31643658 - 31643561
Alignment:
| Q |
268 |
aactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcatagaata |
365 |
Q |
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|||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| |
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| T |
31643658 |
aactaaccagaaaattatgatataaaaacgctctaggctcccacgatacgatttcaacccaacgcttattgtcatcgtcttcacttctgcatagaata |
31643561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 271 - 359
Target Start/End: Complemental strand, 31650828 - 31650740
Alignment:
| Q |
271 |
tgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcat |
359 |
Q |
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| T |
31650828 |
tgaccagaaaattatgatataaaaatgctctaggctcccacgatatgatttgaacccaacgcttattgtcatcgtcttcatttctgcat |
31650740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 215 - 342
Target Start/End: Complemental strand, 31654359 - 31654226
Alignment:
| Q |
215 |
taattagatcattaacaaataattcttatca-taaaa---agtaagaaaggaagcaa--aactgaccagaaaattatgatataaaaatgctctaggctcc |
308 |
Q |
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||||||||||||||||||||||| ||||||| ||||| || ||||| |||| ||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
31654359 |
taattagatcattaacaaataatccttatcaataaaagcaagcaagaagggaaacaagaaactgacaagaaaattatgatataaaaatgctctaggctcc |
31654260 |
T |
|
| Q |
309 |
cacgatacgatttgaacccaacgcttattgtcat |
342 |
Q |
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| T |
31654259 |
cacgatatgatttgaacccaacgcttattgtcat |
31654226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 268 - 359
Target Start/End: Complemental strand, 31635684 - 31635593
Alignment:
| Q |
268 |
aactgaccagaaaattatgatataaaaatgctctaggctcccacgatacgatttgaacccaacgcttattgtcattgtcttcacttctgcat |
359 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| ||| || | ||||||| |
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| T |
31635684 |
aactgaccaaaaaattatgatataaaaatactctaggctcccacgatacgatttcaacccaacgcttattgtcatcgtcatcgcgtctgcat |
31635593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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