View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10186_low_6 (Length: 443)
Name: NF10186_low_6
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10186_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 414; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 18 - 431
Target Start/End: Complemental strand, 41564528 - 41564115
Alignment:
| Q |
18 |
agtgtgttaagaatcctccaactgaaaagtgtgatagtatcaaaacttgaggagcccaaccctttatcaaaaatcctttccctttagtcctttcctcaaa |
117 |
Q |
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| T |
41564528 |
agtgtgttaagaatcctccaactgaaaagtgtgatagtatcaaaacttgaggagcccaaccctttatcaaaaatcctttccctttagtcctttcctcaaa |
41564429 |
T |
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| Q |
118 |
acttgattccttgatccatttattcaactcttctgtttgatttctttccctaattacccaaatgaatggtctttcacattcttctaatgccataccaagt |
217 |
Q |
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| T |
41564428 |
acttgattccttgatccatttattcaactcttctgtttgatttctttccctaattacccaaatgaatggtctttcacattcttctaatgccataccaagt |
41564329 |
T |
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| Q |
218 |
tctataaactgcaaagaagttaaattacatatacttcctaagcatacatatataacagaattttgcttttgcaaatcaagccactttaagcaattttcta |
317 |
Q |
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| T |
41564328 |
tctataaactgcaaagaagttaaattacatatacttcctaagcatacatatataacagaattttgcttttgcaaatcaagccactttaagcaattttcta |
41564229 |
T |
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| Q |
318 |
catcagttgaagaagccaccttgttgttccctctttgagccatatctaagttattcttgttccttagtgaaacaggaccaacacaccaaactttaccatt |
417 |
Q |
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| T |
41564228 |
catcagttgaagaagccaccttgttgttccctctttgagccatatctaagttattcttgttccttagtgaaacaggaccaacacaccaaactttaccatt |
41564129 |
T |
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| Q |
418 |
cctagtgttcttca |
431 |
Q |
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| T |
41564128 |
cctagtgttcttca |
41564115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 236 - 322
Target Start/End: Complemental strand, 41565013 - 41564927
Alignment:
| Q |
236 |
gttaaattacatatacttcctaagcatacatatataacagaattttgcttttgcaaatcaagccactttaagcaattttctacatca |
322 |
Q |
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| T |
41565013 |
gttaaactacatatacttcctgaacatacaatgataacagcatttggattttgcaaattaagtcactttaagcaattttccacatca |
41564927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 46 - 90
Target Start/End: Complemental strand, 41545667 - 41545623
Alignment:
| Q |
46 |
gtgtgatagtatcaaaacttgaggagcccaaccctttatcaaaaa |
90 |
Q |
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| T |
41545667 |
gtgtgatagtatcaacacttgtggtgcccaaccctttatcaaaaa |
41545623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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