View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10186_low_9 (Length: 407)

Name: NF10186_low_9
Description: NF10186
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10186_low_9
NF10186_low_9
[»] chr3 (2 HSPs)
chr3 (1-395)||(32925592-32925986)
chr3 (45-146)||(34545882-34545981)
[»] chr1 (3 HSPs)
chr1 (1-391)||(33928503-33928911)
chr1 (2-376)||(37501656-37502047)
chr1 (104-181)||(10621783-10621860)
[»] chr8 (3 HSPs)
chr8 (104-391)||(32331350-32331658)
chr8 (1-185)||(43190049-43190232)
chr8 (220-352)||(42347221-42347350)
[»] chr2 (1 HSPs)
chr2 (4-179)||(36284272-36284448)
[»] chr4 (2 HSPs)
chr4 (230-388)||(10406016-10406169)
chr4 (2-79)||(10406313-10406390)
[»] chr5 (1 HSPs)
chr5 (2-65)||(3548880-3548943)


Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Original strand, 32925592 - 32925986
Alignment:
Q  1 cacattaagaaccattgtatcattatcatcacattgccaacatgcttcatgagtgggcctaactaatgcggttgaaatatagtattgttgaatgcctgct 100  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  32925592 cacattaagaaccattgtatcattatcatcactttgccaacatgcttcatgagtgggcctaactaatgcggttgaaatatagtattgtcgaatgcccgct 32925691  T
Q  101 ctaaaacttgcgattgcgcataaacagctgaaactgtaattgagacaaccagttggataccatcaaacaccaacttgttgcgagtgataggggtgacact 200  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||    
T  32925692 ctaaaacttgcaattgcgcataaacagctgaaactgtagttgagacaaccagttggataccatcaaacaccaacttgttgtgagtgataggggcgacact 32925791  T
Q  201 ccctattttagttaataaaatttgtatgatatctttcatattactcgaaggattattagcgcacaatgaagacatgttagggaatctacatcaagaccac 300  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||||||||||||||||||||||||    
T  32925792 ccctattttacttaataaaatttgtatgatatctttcatattactcgaaggattattagcgcgcaatgaagacacattagggaatctacatcaagaccac 32925891  T
Q  301 actacaacagctcgcagacaaaggatgaggcaatgaagagtagattcatcttcctcgttacatcatggacatgtagtagaaacattcaccctttg 395  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32925892 actacaacagctcgcagacaaaggatgaggcaatgaagaatagattcatcttcctcgttacatcatggacatgtagtagaaacattcaccctttg 32925986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 45 - 146
Target Start/End: Original strand, 34545882 - 34545981
Alignment:
Q  45 cttcatgagtgggcctaactaatgcggttgaaatatagtattgttgaatgcctgctctaaaacttgcgattgcgcataaacagctgaaactgtaattgag 144  Q
    ||||||||||||||||||||| ||||||||||  ||| |||||| ||||| | |||   |||||||| ||||||||| ||||||||||| |||| |||||    
T  34545882 cttcatgagtgggcctaactagtgcggttgaa--ataatattgtcgaatgtcagctgcgaaacttgcaattgcgcatgaacagctgaaattgtagttgag 34545979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 391
Target Start/End: Complemental strand, 33928911 - 33928503
Alignment:
Q  1 cacattaagaaccattgtatcattatcatcacattgccaacatgcttcatgagtgggcctaactaatgcggttgaaatatagtattgttgaatgcctgct 100  Q
    |||||||||||||||||||||||||||| ||  |||||||||| |||||||||||||||||||||||||||||||||||  ||||||| |||||||  ||    
T  33928911 cacattaagaaccattgtatcattatcaccatgttgccaacatacttcatgagtgggcctaactaatgcggttgaaata--gtattgtcgaatgccctct 33928814  T
Q  101 ctaaaacttgcgattgcgcataaacagctgaaactgtaattgagacaaccagttggataccatcaaacaccaacttgttgcgagtg-------------- 186  Q
     | |||||||| |||||| |||||| || |||| |||| ||||||| | |||||| ||||||||||||||||||||||||||| ||                  
T  33928813 gtgaaacttgcaattgcgtataaactgcagaaattgtagttgagactagcagttgaataccatcaaacaccaacttgttgcgaatgcaccataggttcca 33928714  T
Q  187 -------ataggggtgacactccctattttagttaataaaatttgtatgatatctttcatattactcgaaggattattagcgcacaatgaagacatgtta 279  Q
           |||||||||| ||||||||| ||| ||||||  | |||||||||||||  |||| ||||||||||||||||||||||||||||||||| ||      
T  33928713 cattatgataggggtgatactccctatcttacttaatatcaattgtatgatatctcccataatactcgaaggattattagcgcacaatgaagacacgtag 33928614  T
Q  280 gggaatctacatcaagaccacactacaacagctcgcagacaaaggatgaggcaatgaagagtagattcatcttcctcgttacatcatggacatgtagtag 379  Q
    || |||| ||||| |||||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||| |||||| |||||| ||    
T  33928613 ggtaatccacatccagaccacattacaacagctcgcagacaaaggatgaggcaatgaggaatagattcatcttcctcg-tacaacatggatatgtagcag 33928515  T
Q  380 aaacattcaccc 391  Q
    |||| |||||||    
T  33928514 aaactttcaccc 33928503  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 2 - 376
Target Start/End: Complemental strand, 37502047 - 37501656
Alignment:
Q  2 acattaagaaccattgtatcattatcatcacattgccaacatgcttcatgagtgggcctaactaatgcggttgaaatatagtattgttgaatgcctgctc 101  Q
    ||||||||||||||||||||||||||| ||   | | ||||| ||||||||||||||||||||||||||||| |||||   |||||||||||||| | |     
T  37502047 acattaagaaccattgtatcattatcaccatgctactaacatacttcatgagtgggcctaactaatgcggttaaaataa--tattgttgaatgcccgttg 37501950  T
Q  102 taaaacttgcgattgcgcataaacagctgaaactgtaattgagacaaccagttggataccatcaaacaccaacttgttgcgagtg--------------- 186  Q
    | |||||||| ||||| ||||||||  ||||||| || ||||||| |    ||||||| |||||| |||||||||||||||||||                   
T  37501949 tgaaacttgcaattgcacataaacaattgaaactatagttgagactattgattggataacatcaatcaccaacttgttgcgagtgcgccgtaagttctac 37501850  T
Q  187 ------ataggggtgacactccctattttagttaataaaatttgtatgatatctttcatattactcgaaggattattagcgcacaatgaagacatgttag 280  Q
          |||||||||||||||||||| ||| ||||||| ||||||||||||||| |||||||||||||  |||| | |||  ||||||||||||  || |    
T  37501849 attatgataggggtgacactccctatcttatttaataacatttgtatgatatctctcatattactcgagagattgtcagc--acaatgaagacacattgg 37501752  T
Q  281 ggaatctacatcaagaccacactacaacagctcgcagacaaaggatgaggcaatgaagagtagattcatcttcctcgttacatcatggacatgtag 376  Q
    |||| | ||||| ||||||| || ||||| ||||  ||||||||||| ||||||||||| || ||||||||||||||||||| |||||||||||||    
T  37501751 ggaagccacatccagaccacgctgcaacaactcgtggacaaaggatggggcaatgaagaatatattcatcttcctcgttacaacatggacatgtag 37501656  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 10621860 - 10621783
Alignment:
Q  104 aaacttgcgattgcgcataaacagctgaaactgtaattgagacaaccagttggataccatcaaacaccaacttgttgc 181  Q
    |||||||| |||||| ||||||| ||||||| ||| ||| ||  |  ||||| |||||||||||||||||||| ||||    
T  10621860 aaacttgcaattgcgtataaacaactgaaacagtagttgggattataagttgaataccatcaaacaccaacttcttgc 10621783  T

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Target: chr8 (Bit Score: 109; Significance: 1e-54; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 104 - 391
Target Start/End: Complemental strand, 32331658 - 32331350
Alignment:
Q  104 aaacttgcgattgcgcataaacagctgaaactgtaattgagacaaccagttggataccatcaaacaccaacttgttgcgagtg----------------- 186  Q
    |||||||| ||||||| |||||||| ||||||| | ||  ||| | |||||||||||||||||||||||||||||||||||||                     
T  32331658 aaacttgcaattgcgcgtaaacagcagaaactgcagttcggactatcagttggataccatcaaacaccaacttgttgcgagtgcacgataggttccacat 32331559  T
Q  187 ----ataggggtgacactccctattttagttaataaaatttgtatgatatctttcatattactcgaaggattattagcgcacaatgaagacatgttaggg 282  Q
        ||||||| |||||| ||||| ||| ||||||| ||||||||||||||| |||||||||||||||||||||||  |||||| ||||||| |||||||    
T  32331558 tataataggggcgacacttcctatcttacttaataacatttgtatgatatctctcatattactcgaaggattattaatgcacaaagaagacacgttaggg 32331459  T
Q  283 aatctacatcaagaccacactacaacagctcgcagacaaaggatgaggcaatgaagagtagattcatcttcctcgttacatcatggacatgtagtagaaa 382  Q
    |||  ||||| |||||||||| ||||||||||| |||||||||||||||||||| || |||||||||||| |   ||||| ||||||||| ||| |||||    
T  32331458 aattcacatccagaccacactgcaacagctcgcggacaaaggatgaggcaatgaggaatagattcatctttccgattacaacatggacatatagcagaaa 32331359  T
Q  383 cattcaccc 391  Q
    |||||||||    
T  32331358 cattcaccc 32331350  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 43190232 - 43190049
Alignment:
Q  1 cacattaagaaccattgtatcattatcatcacattgccaacatgcttcatgagtgggcctaactaatgcggttgaaatatagtattgttgaatgcctgct 100  Q
    |||||||||||| | || ||||||||||     |||||||||||||||||||||||| |||||||| |||| ||||  | | || |||  |||||  |||    
T  43190232 cacattaagaacaagtgcatcattatcactgtgttgccaacatgcttcatgagtgggtctaactaaagcggctgaa--acaatactgtcaaatgctcgct 43190135  T
Q  101 ctaaaacttgc-gattgcgcataaacagctgaaactgtaattgagacaaccagttggataccatcaaacaccaacttgttgcgagt 185  Q
     | ||||||||  | |||||| ||||| || ||| |||| ||  ||  | |||||||||||||||||||||||||||||| |||||    
T  43190134 gtgaaacttgcaaactgcgcacaaacaacttaaaatgtagttaggagtatcagttggataccatcaaacaccaacttgttacgagt 43190049  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 352
Target Start/End: Original strand, 42347221 - 42347350
Alignment:
Q  220 atttgtatgatatctttcatattactcgaaggattattagcgcacaatgaagacatgttagggaatctacatcaagaccacactacaacagctcgcagac 319  Q
    |||||||| |||||| | ||||||||| || |  ||||||||||||| ||||||| ||| ||||||| ||| | | |||||||| |||||   ||| |      
T  42347221 atttgtattatatctctgatattactcaaaagtgtattagcgcacaacgaagacacgttggggaatccacacccaaaccacacttcaacaaaccgctg-- 42347318  T
Q  320 aaaggatgaggcaatgaagagtagattcatctt 352  Q
     ||||| ||||||||||||| |||||| |||||    
T  42347319 -aaggacgaggcaatgaagaatagatttatctt 42347350  T

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Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 179
Target Start/End: Complemental strand, 36284448 - 36284272
Alignment:
Q  4 attaagaaccattgtatcattatcatcac---attgccaacatgcttcatgagtgggcctaactaatgcggttgaaatatagtattgttgaatgcctgct 100  Q
    ||||||||||||| |||||||||||||||    |||||||||| ||||| |||||| ||||||||| |||||||||  | | ||||||  |||| | |||    
T  36284448 attaagaaccattatatcattatcatcaccatgttgccaacatacttcacgagtggacctaactaaagcggttgaa--acaatattgtcaaatgtccgct 36284351  T
Q  101 ctaaaacttgcgattgcgcataaacagctgaaactgtaattgagacaaccagttggataccatcaaacaccaacttgtt 179  Q
     | |||||||| |||| ||| ||| || |||||| ||| ||||||| | |||||| |||||||||||||||||||||||    
T  36284350 atgaaacttgcaattgtgcaaaaatagatgaaaccgtatttgagactatcagttgaataccatcaaacaccaacttgtt 36284272  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 230 - 388
Target Start/End: Complemental strand, 10406169 - 10406016
Alignment:
Q  230 tatctttcatattactcgaaggattattagcgcacaatgaagacatgttagggaatctacatcaagaccacactacaacagctcgcagacaaaggatgag 329  Q
    ||||| |||||||||||||  |||||||||||||||||||||||| || || ||||| | | |||     |||| ||||  ||||  ||||| ||||||     
T  10406169 tatctctcatattactcgagagattattagcgcacaatgaagacacgtcagagaatccaaaccaa-----cactgcaaccactcgtggacaatggatgaa 10406075  T
Q  330 gcaatgaagagtagattcatcttcctcgttacatcatggacatgtagtagaaacattca 388  Q
    |||||||||| |||||||||||||| ||||||| ||||||| ||||  |||||||||||    
T  10406074 gcaatgaagaatagattcatcttccccgttacaacatggacgtgtaccagaaacattca 10406016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 10406390 - 10406313
Alignment:
Q  2 acattaagaaccattgtatcattatcatcacattgccaacatgcttcatgagtgggcctaactaatgcggttgaaata 79  Q
    |||||||||  |||||||||||||||| ||   ||||| ||| |||||||| ||| ||||| ||||||||||||||||    
T  10406390 acattaagagtcattgtatcattatcaccatgctgccagcatacttcatgaatggacctaattaatgcggttgaaata 10406313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 3548943 - 3548880
Alignment:
Q  2 acattaagaaccattgtatcattatcatcacattgccaacatgcttcatgagtgggcctaacta 65  Q
    |||||||||||||||||| ||||||   ||  |||||||||| |||||||||||||||||||||    
T  3548943 acattaagaaccattgtaccattatttccatgttgccaacatacttcatgagtgggcctaacta 3548880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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