View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_high_12 (Length: 294)

Name: NF10187_high_12
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_high_12
NF10187_high_12
[»] chr7 (6 HSPs)
chr7 (1-276)||(14616301-14616575)
chr7 (1-234)||(14616013-14616245)
chr7 (151-232)||(4007068-4007149)
chr7 (151-232)||(4012460-4012541)
chr7 (54-226)||(16030862-16031037)
chr7 (246-276)||(14616631-14616661)
[»] chr5 (3 HSPs)
chr5 (1-234)||(17713642-17713870)
chr5 (85-226)||(23909731-23909871)
chr5 (246-276)||(17713556-17713586)
[»] chr4 (8 HSPs)
chr4 (53-232)||(18618551-18618729)
chr4 (59-234)||(20309774-20309948)
chr4 (53-143)||(20572562-20572652)
chr4 (133-226)||(2758010-2758102)
chr4 (92-226)||(2767592-2767725)
chr4 (1-42)||(2767494-2767535)
chr4 (104-148)||(2762219-2762263)
chr4 (12-40)||(21211653-21211681)
[»] chr8 (4 HSPs)
chr8 (66-232)||(18450453-18450618)
chr8 (53-232)||(20685307-20685485)
chr8 (53-232)||(14755949-14756130)
chr8 (85-232)||(29388752-29388898)
[»] scaffold0067 (2 HSPs)
scaffold0067 (87-232)||(12741-12885)
scaffold0067 (87-232)||(19799-19943)
[»] scaffold0027 (1 HSPs)
scaffold0027 (60-232)||(52937-53108)
[»] chr2 (8 HSPs)
chr2 (54-232)||(23469411-23469589)
chr2 (75-142)||(22542302-22542369)
chr2 (185-232)||(13312924-13312971)
chr2 (1-43)||(2453077-2453119)
chr2 (55-121)||(17502465-17502531)
chr2 (1-43)||(19031344-19031386)
chr2 (1-43)||(22542204-22542246)
chr2 (11-43)||(2453013-2453045)
[»] chr1 (5 HSPs)
chr1 (53-237)||(17061302-17061488)
chr1 (53-237)||(41580887-41581073)
chr1 (11-43)||(17107327-17107359)
chr1 (11-41)||(13143504-13143534)
chr1 (204-232)||(16884360-16884388)
[»] chr6 (4 HSPs)
chr6 (54-232)||(22337228-22337406)
chr6 (54-232)||(22266956-22267134)
chr6 (53-232)||(17795465-17795643)
chr6 (151-232)||(22724571-22724653)
[»] scaffold0039 (2 HSPs)
scaffold0039 (54-232)||(64117-64294)
scaffold0039 (54-232)||(66073-66250)
[»] chr3 (2 HSPs)
chr3 (54-232)||(14753253-14753431)
chr3 (192-232)||(21487148-21487188)
[»] scaffold0010 (1 HSPs)
scaffold0010 (1-39)||(134974-135012)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 14616575 - 14616301
Alignment:
Q  1 caaatggagatacttttcacctccaaaggtaattgtgggggttcaagaggatgcatagcaaagacgatttctcggagtagaagatcaaaggattgtatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  14616575 caaatggagatacttttcacctccaaaggtaattgtgggggttcaagaggatgcatagcaaaggcgatttctcggagtagaagatcaaaggattgtatgc 14616476  T
Q  101 aaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaagattggatatattgtgattgattaacatagaagattgggaatcaaagg 200  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  14616475 aaacttgagattcaaagaccttgtggctgtctgatttcaagagagctt-aaagattagatatattgtgattgattaacatagaagattgggaatcaaagg 14616377  T
Q  201 agtctttgtaattatacacttgtaaacattttaaacacnnnnnnnaagaactattgtagaatttgagatctagatt 276  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  14616376 agtctttgtaattatacacttgtaaacattttaaacactttttttaagaactattgtagaatttgagatctagatt 14616301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 14616245 - 14616013
Alignment:
Q  1 caaatggagatacttttcacctccaaaggtaattgtgggggttcaagaggatgcatagcaaagacgatttctcggagtagaagatcaaaggattgtatgc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  14616245 caaatggagatacttttcacctccaaaggtaattgtgggggttcaagaggatgcatatcaaagacgatttctcggagtagaagatcaaaggattgcatgc 14616146  T
Q  101 aaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaagattggatatattgtgattgattaacatagaagattgggaatcaaagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14616145 aaacttgagattcaaagacctcgtggctgtctgatttcaagagagctt-aaagattggatatattgtgattgattaacatagaagattgggaatcaaagg 14616047  T
Q  201 agtctttgtaattatacacttgtaaacattttaa 234  Q
    ||||| ||||||||||||||| ||||||||||||    
T  14616046 agtctatgtaattatacacttataaacattttaa 14616013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 4007068 - 4007149
Alignment:
Q  151 aagattggatatattgtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    |||||||||| |  |||||||| ||| ||||||||||| | |||  ||||| |||||||||| |||||||||||||||||||    
T  4007068 aagattggatcttgtgtgattgtttagcatagaagattagaaattgaaggaatctttgtaatcatacacttgtaaacatttt 4007149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 4012460 - 4012541
Alignment:
Q  151 aagattggatatattgtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    |||||||||| |  |||||||| ||| ||||||||||| | |||  ||||| |||||||||| |||||||||||||||||||    
T  4012460 aagattggatcttgtgtgattgtttagcatagaagattagaaattgaaggaatctttgtaatcatacacttgtaaacatttt 4012541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 54 - 226
Target Start/End: Original strand, 16030862 - 16031037
Alignment:
Q  54 catagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctg-tctgatttcaagagagcttaaaa 152  Q
    ||||||||||| ||||| |  |||||||||||| ||||||   ||||||||||||||||  ||||||| |||| |  ||  |||| ||||||| || ||     
T  16030862 catagcaaagaagatttattagagtagaagatctaaggatgacatgcaaacttgagatttgaagaccttgtggattatccaattttaagagagtttgaa- 16030960  T
Q  153 gattggatatatt---gtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaa 226  Q
    |||||||| |  |   ||||||  ||| ||||||||||| | |||||||||| |||||||||| |||||||||||||    
T  16030961 gattggattttgttgtgtgatttcttagcatagaagattagaaatcaaaggaatctttgtaatcatacacttgtaaa 16031037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 276
Target Start/End: Complemental strand, 14616661 - 14616631
Alignment:
Q  246 aagaactattgtagaatttgagatctagatt 276  Q
    |||||||||||||||||||||||||||||||    
T  14616661 aagaactattgtagaatttgagatctagatt 14616631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 181; Significance: 8e-98; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 17713642 - 17713870
Alignment:
Q  1 caaatggagatacttttcacctccaaaggtaattgtgggggttcaagaggatgcatagcaaagacgatttctcggagtagaagatcaaaggattgtatgc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||    
T  17713642 caaatggagatacttttcacctccaaaggtaattgtgggggttcaagaggatgcatagcaaagacgatttcttggagtaaaagatcaaaggattgcatgc 17713741  T
Q  101 aaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaagattggatatattgtgattgattaacatagaagattgggaatcaaagg 200  Q
    ||||||||||||||||||||||||||    |||||||||||||| ||| |||||||||||||| |||  |||||||||||||||||||||||||||||||    
T  17713742 aaacttgagattcaaagacctcgtgg----ctgatttcaagagacctt-aaagattggatatagtgtacttgattaacatagaagattgggaatcaaagg 17713836  T
Q  201 agtctttgtaattatacacttgtaaacattttaa 234  Q
    ||||||||||||||||||||||||||||||||||    
T  17713837 agtctttgtaattatacacttgtaaacattttaa 17713870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 226
Target Start/End: Complemental strand, 23909871 - 23909731
Alignment:
Q  85 tcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaagattggatatattgtgattgattaacatagaa 184  Q
    |||| |||||| |||||| ||||||||||||||| |  |||| ||||  |||| |||||  ||| || ||||| || |  |||||||| ||| |||||||    
T  23909871 tcaagggattgcatgcaagcttgagattcaaagatcatgtggttgtccaattttaagaggtcttgaa-gattgaatcttgtgtgattgcttagcatagaa 23909773  T
Q  185 gattgggaatcaaaggagtctttgtaattatacacttgtaaa 226  Q
    ||||| ||||| ||||| |||||||||| || || |||||||    
T  23909772 gattgagaatccaaggaatctttgtaatcatgcatttgtaaa 23909731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 276
Target Start/End: Original strand, 17713556 - 17713586
Alignment:
Q  246 aagaactattgtagaatttgagatctagatt 276  Q
    |||||||||||||||||||||||||||||||    
T  17713556 aagaactattgtagaatttgagatctagatt 17713586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 18618729 - 18618551
Alignment:
Q  53 gcatagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaa 152  Q
    ||||||||||||||| ||||| ||||||||| | || |||||| |||||| |||||||||||||||||| |||||||||  ||||||||||  ||| |||    
T  18618729 gcatagcaaagacgaattctcagagtagaagtttaagggattgcatgcaagcttgagattcaaagaccttgtggctgtccaatttcaagaggtctt-aaa 18618631  T
Q  153 gattggatatattgtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    |||||||| |||| |||||| ||| ||||||||||| ||||||||| || |||||| ||| ||| | |||||||||||||    
T  18618630 gattggatttattctgattgcttagcatagaagattaggaatcaaaagaatctttgcaatcatatatttgtaaacatttt 18618551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 234
Target Start/End: Complemental strand, 20309948 - 20309774
Alignment:
Q  59 caaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaagattgg 158  Q
    |||||||||||||| |||||| ||||||||||||||  |||||| |||||||||  |||||||  ||| ||||  ||||||||||  |||  ||||||||    
T  20309948 caaagacgatttcttggagtaaaagatcaaaggatttcatgcaatcttgagatttgaagaccttatggttgtccaatttcaagaggtctt-gaagattgg 20309850  T
Q  159 atatattgtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaacattttaa 234  Q
    || |  ||  |||| ||| ||||||| ||| |||||| ||| | |||||||||| |||||||||||||||||||||    
T  20309849 atcttgtgccattgcttagcatagaaaattaggaatcgaagtaatctttgtaatcatacacttgtaaacattttaa 20309774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 20572562 - 20572652
Alignment:
Q  53 gcatagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagag 143  Q
    ||||||||||||||||||||||||||  |||||||| |||||| || ||| ||||| |||  ||||||| |||||||||||| ||||||||    
T  20572562 gcatagcaaagacgatttctcggagtttaagatcaagggattgcatacaagcttgaaatttgaagaccttgtggctgtctgacttcaagag 20572652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 226
Target Start/End: Original strand, 2758010 - 2758102
Alignment:
Q  133 gatttcaagagagcttaaaagattggatatattgtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaa 226  Q
    |||||||||||||||| || |||||||| || ||||||||  || ||||||||||| |||||| || || |||||||||| ||||  |||||||    
T  2758010 gatttcaagagagcttgaa-gattggatctagtgtgattgcctagcatagaagattaggaatcgaaagaatctttgtaatcatacttttgtaaa 2758102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 226
Target Start/End: Original strand, 2767592 - 2767725
Alignment:
Q  92 attgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaagattggatatattgtgattgattaacatagaagattggg 191  Q
    |||| |||||| ||||| |||| ||||||| ||||||||  ||||||||||||||||  |||||| ||| || ||| ||||  || ||||||||||| |     
T  2767592 attgcatgcaagcttgaaattcgaagaccttgtggctgttagatttcaagagagctt-gaagattagatctagtgttattgcctagcatagaagattaga 2767690  T
Q  192 aatcaaaggagtctttgtaattatacacttgtaaa 226  Q
    |||  || || |||||||||| |||  ||||||||    
T  2767691 aatataaagaatctttgtaatcataatcttgtaaa 2767725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2767494 - 2767535
Alignment:
Q  1 caaatggagatacttttcacctccaaaggtaattgtgggggt 42  Q
    |||| |||| ||||||||||||| ||||||||||||||||||    
T  2767494 caaaaggaggtacttttcacctcaaaaggtaattgtgggggt 2767535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 104 - 148
Target Start/End: Original strand, 2762219 - 2762263
Alignment:
Q  104 cttgagattcaaagacctcgtggctgtctgatttcaagagagctt 148  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||||||    
T  2762219 cttgatattcgaagaccttgtggctgtccgatttcaagagagctt 2762263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 40
Target Start/End: Original strand, 21211653 - 21211681
Alignment:
Q  12 acttttcacctccaaaggtaattgtgggg 40  Q
    |||||||||||||||||||||||||||||    
T  21211653 acttttcacctccaaaggtaattgtgggg 21211681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 66 - 232
Target Start/End: Original strand, 18450453 - 18450618
Alignment:
Q  66 gatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaagattggatatatt 165  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||| || |||||||| | ||||||||||  |||  |||||||||| |  |    
T  18450453 gatttctcggagtagaagatcaaaggattgcatgcaagcttgagattcaaagatcttgtggctgtgtaatttcaagagttctt-gaagattggatcttgt 18450551  T
Q  166 gtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    ||||||| ||| ||||||||||| |||||| ||| | |||||||||| ||||||||||||| |||||    
T  18450552 gtgattgcttagcatagaagattaggaatcgaagaaatctttgtaatcatacacttgtaaatatttt 18450618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 20685485 - 20685307
Alignment:
Q  53 gcatagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaa 152  Q
    ||||||||||||||| |||||  |||||||| ||||||||||| |||||| |||||| ||| |||| ||  ||||||||  | |||||||| | ||  ||    
T  20685485 gcatagcaaagacgaattctcaaagtagaagttcaaaggattgcatgcaagcttgaggttcgaagatcttatggctgtccaaattcaagag-gttttgaa 20685387  T
Q  153 gattggatatattgtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    |||||||| |  |||||||| ||| ||||||| ||| |||||| || || |||||||| | |||||||||||||||||||    
T  20685386 gattggatcttgtgtgattgcttagcatagaacattaggaatcgaaagaatctttgtattcatacacttgtaaacatttt 20685307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 14756130 - 14755949
Alignment:
Q  53 gcatagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaa 152  Q
    ||||| |||||| ||||| | |||| |||| |||||||||||| |||||  |||||||||| |||||||  |||||  | ||||||||||||||||  ||    
T  14756130 gcatatcaaagatgatttttaggagaagaaaatcaaaggattgcatgcatgcttgagattcgaagaccttttggctacccgatttcaagagagctt-gaa 14756032  T
Q  153 gattggatatattgtgattgattaacatagaagatt---gggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    ||||| || || |||||||| || ||||| | ||||    |||||| | | | |||||||||| |||||||||||||||||||    
T  14756031 gattgaatctagtgtgattgcttgacataaatgattaggaggaatcgatgaaatctttgtaatcatacacttgtaaacatttt 14755949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 85 - 232
Target Start/End: Complemental strand, 29388898 - 29388752
Alignment:
Q  85 tcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaagattggatatattgtgattgattaacatagaa 184  Q
    |||| |||||| |||||| ||  |||||| ||||||| ||| |||||| ||||||||||| ||| || |||||||| |  |||||||| ||| |||||||    
T  29388898 tcaagggattgcatgcaagctctagattcgaagaccttgtgactgtctaatttcaagagaacttgaa-gattggatcttgtgtgattgcttagcatagaa 29388800  T
Q  185 gattgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    ||||  ||||| || || ||||||| || ||||| ||||| |||||||    
T  29388799 gattatgaatcgaaagaatctttgttatcatacatttgtacacatttt 29388752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 12885 - 12741
Alignment:
Q  87 aaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaagattggatatattgtgattgattaacatagaaga 186  Q
    ||||||||| ||||||||||||||||| |||| || |||||||||| | ||||||||  ||| || |||||||| |  |||||||  |||  ||||||||    
T  12885 aaaggattgcatgcaaacttgagattcgaagatcttgtggctgtctaaattcaagaggtcttgaa-gattggatcttgtgtgattacttagtatagaaga 12787  T
Q  187 ttgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    ||| ||||| ||||| |||||||||| |||| ||||||||||||||    
T  12786 ttgtgaatcgaaggaatctttgtaatcatacgcttgtaaacatttt 12741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 87 - 232
Target Start/End: Complemental strand, 19943 - 19799
Alignment:
Q  87 aaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaagattggatatattgtgattgattaacatagaaga 186  Q
    ||||||||| ||||||||||||||||| |||| || |||||||||| | ||||||||  ||| || |||||||| |  |||||||  |||  ||||||||    
T  19943 aaaggattgcatgcaaacttgagattctaagatcttgtggctgtctaaattcaagaggtcttgaa-gattggatcttgtgtgattacttagtatagaaga 19845  T
Q  187 ttgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    ||| ||||| ||||| |||||||||| |||| ||||||||||||||    
T  19844 ttgtgaatcgaaggaatctttgtaatcatacgcttgtaaacatttt 19799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0027 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 60 - 232
Target Start/End: Complemental strand, 53108 - 52937
Alignment:
Q  60 aaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaagattgga 159  Q
    |||||||||||||| ||| ||||||||||||||||| |||||| ||| |||||| ||||||| |||| ||||  ||||| |||| | |   |||||||||    
T  53108 aaagacgatttctcagagcagaagatcaaaggattgcatgcaagcttaagattcgaagaccttgtggttgtccaatttccagag-gttgtgaagattgga 53010  T
Q  160 tatattgtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    |||  |||||||  ||| |||| |||||| | |||||| ||| | ||| |||| |||||||||||||||||||    
T  53009 tattgtgtgatttcttagcataaaagattagtaatcaagggaatttttataatcatacacttgtaaacatttt 52937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 7e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 23469411 - 23469589
Alignment:
Q  54 catagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaag 153  Q
    |||| ||||||||| |||||  |||||||| | ||||||||| ||| || |||||||||| ||||||  |||| |||| |||||||||||  ||| ||||    
T  23469411 cataacaaagacgaattctcatagtagaagtttaaaggattgcatgaaagcttgagattcgaagaccatgtggttgtccgatttcaagaggtctt-aaag 23469509  T
Q  154 attggatatattgtgattgattaacatagaagatt-gggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    |||||||    |||||||| ||| |||||||||||   ||||| || || |||||||||||||||||||||| |||||||    
T  23469510 attggatcgtgtgtgattgcttagcatagaagattaatgaatcgaatgaatctttgtaattatacacttgtagacatttt 23469589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 75 - 142
Target Start/End: Original strand, 22542302 - 22542369
Alignment:
Q  75 gagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaaga 142  Q
    ||||| ||||||||| ||||| ||||||  |||||||||||||||||  |||||||| ||||||||||    
T  22542302 gagtacaagatcaaaagattgcatgcaagtttgagattcaaagaccttatggctgtccgatttcaaga 22542369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 13312924 - 13312971
Alignment:
Q  185 gattgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    |||| |||||||||||||  |||||||| |||||||||||||||||||    
T  13312924 gattaggaatcaaaggagagtttgtaatcatacacttgtaaacatttt 13312971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 2453077 - 2453119
Alignment:
Q  1 caaatggagatacttttcacctccaaaggtaattgtgggggtt 43  Q
    |||| |||| ||||||||||||||||||||||| |||||||||    
T  2453077 caaaaggaggtacttttcacctccaaaggtaatcgtgggggtt 2453119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 17502531 - 17502465
Alignment:
Q  55 atagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacct 121  Q
    |||| ||||| ||||| ||  ||||||||||||||| |||| |||||| |||||| |||||||||||    
T  17502531 atagtaaagaagatttatcatagtagaagatcaaagaattgcatgcaagcttgaggttcaaagacct 17502465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 19031386 - 19031344
Alignment:
Q  1 caaatggagatacttttcacctccaaaggtaattgtgggggtt 43  Q
    |||| |||| || ||||||||||||||||||||||||||||||    
T  19031386 caaaaggaggtatttttcacctccaaaggtaattgtgggggtt 19031344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 22542204 - 22542246
Alignment:
Q  1 caaatggagatacttttcacctccaaaggtaattgtgggggtt 43  Q
    |||| |||| |||||||||||||||||||||||||||| ||||    
T  22542204 caaaaggaggtacttttcacctccaaaggtaattgtggcggtt 22542246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 43
Target Start/End: Original strand, 2453013 - 2453045
Alignment:
Q  11 tacttttcacctccaaaggtaattgtgggggtt 43  Q
    ||||||||||||||||||||||| |||||||||    
T  2453013 tacttttcacctccaaaggtaatcgtgggggtt 2453045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 53 - 237
Target Start/End: Original strand, 17061302 - 17061488
Alignment:
Q  53 gcatagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtgg-ctgtctgatttcaagagagcttaaa 151  Q
    |||||| ||||| | ||||||  |||||||||||||||||||| |||||| |||||||||| |||||||  |||  ||||||||||||||||| |||  |    
T  17061302 gcatagaaaagaaggtttctcatagtagaagatcaaaggattgcatgcaagcttgagattcgaagaccttatggattgtctgatttcaagagaactt-ga 17061400  T
Q  152 agattggat--atattgtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaacattttaaaca 237  Q
    |||| ||||   || |||||||||||| | || |||||| ||||||  |||| | ||||||||  ||| |||||||||||| ||||||    
T  17061401 agatcggattcttagtgtgattgattagcgtataagattaggaatcgtaggattatttgtaatcttactcttgtaaacattctaaaca 17061488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 237
Target Start/End: Complemental strand, 41581073 - 41580887
Alignment:
Q  53 gcatagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtgg-ctgtctgatttcaagagagcttaaa 151  Q
    ||||||||||||  ||||||| |||||||||||  |||||||| ||| || | |||| ||||||||||| ||||  ||| ||||||||||| |||||  |    
T  41581073 gcatagcaaagaatatttctcagagtagaagattgaaggattgcatgaaagcatgaggttcaaagaccttgtggattgtttgatttcaagaaagctt-ga 41580975  T
Q  152 agattggatatat--tgtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaacattttaaaca 237  Q
    ||| | ||| | |  |||||||| ||| |||| |||||| |||||| ||||| |||||| ||||||||| ||||||| ||||| ||||    
T  41580974 agacttgattttttgtgtgattgcttagcataaaagattaggaatcgaaggaatctttgcaattatacatttgtaaatattttcaaca 41580887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 43
Target Start/End: Complemental strand, 17107359 - 17107327
Alignment:
Q  11 tacttttcacctccaaaggtaattgtgggggtt 43  Q
    |||||||||||||||||||||||||||||||||    
T  17107359 tacttttcacctccaaaggtaattgtgggggtt 17107327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 41
Target Start/End: Original strand, 13143504 - 13143534
Alignment:
Q  11 tacttttcacctccaaaggtaattgtggggg 41  Q
    |||||||||||||||||||||||||||||||    
T  13143504 tacttttcacctccaaaggtaattgtggggg 13143534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 232
Target Start/End: Original strand, 16884360 - 16884388
Alignment:
Q  204 ctttgtaattatacacttgtaaacatttt 232  Q
    |||||||||||||||||||||||||||||    
T  16884360 ctttgtaattatacacttgtaaacatttt 16884388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 22337228 - 22337406
Alignment:
Q  54 catagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaag 153  Q
    ||||||||| |||| |||||||||||| |  |||| |||||| ||| || |||||||||| ||||||| ||||||||   |||||| |||  |||  |||    
T  22337228 catagcaaatacgaattctcggagtagcaattcaagggattgcatggaagcttgagattcgaagaccttgtggctgttcaatttcatgaggactt-gaag 22337326  T
Q  154 attggatatattgtgattgattaacatagaagat-tgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    ||||||| | | || |||| ||| |||| |||||  ||||||||||||| ||||| |||| |||||||||||||||||||    
T  22337327 attggatctttagtaattgcttagcataaaagatgagggaatcaaaggaatctttataatcatacacttgtaaacatttt 22337406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 22266956 - 22267134
Alignment:
Q  54 catagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaag 153  Q
    ||||||||| |||| ||||| |||||| |  |||| |||||| ||| || |||||||||| ||||||| ||| ||||    |||||||||  ||| || |    
T  22266956 catagcaaatacgaattctcagagtagcaattcaagggattgcatggaagcttgagattcgaagaccttgtgactgttcagtttcaagaggacttgaa-g 22267054  T
Q  154 attggatatattgtgattgattaacatagaagatt-gggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    ||||||| | | || |||| |||||||| |||||  ||||||||||||| ||||| |||| ||||||||| |||||||||    
T  22267055 attggatctttagtaattgcttaacataaaagatgagggaatcaaaggaatctttataatcatacacttgaaaacatttt 22267134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 17795643 - 17795465
Alignment:
Q  53 gcatagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaa 152  Q
    ||||| |||||||||||||||  ||| |||||||||||||| | |||||| ||  |||||  ||||||| |||| |||| ||||||||||| |  |  ||    
T  17795643 gcataacaaagacgatttctcaaagtggaagatcaaaggatcgcatgcaagctatagatttgaagaccttgtggttgtccgatttcaagag-gtattgaa 17795545  T
Q  153 gattggatatattgtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    | |||||  || |||   || ||  |||| ||||||  ||||| ||||| |||||||||| |||||||||||||||||||    
T  17795544 ggttggacctagtgtagctgcttggcataaaagattatgaatcgaaggaatctttgtaatcatacacttgtaaacatttt 17795465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 151 - 232
Target Start/End: Original strand, 22724571 - 22724653
Alignment:
Q  151 aagattggatatattgtgattgattaacatagaagatt-gggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    |||||||||| |  |||||||  ||| |||| |||||| ||||||| ||||| |||||||||| |||||||||||||||||||    
T  22724571 aagattggatcttgtgtgattccttagcatataagattagggaatcgaaggaatctttgtaatcatacacttgtaaacatttt 22724653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 64117 - 64294
Alignment:
Q  54 catagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaag 153  Q
    |||| ||||||||| ||||  ||||||||| |||| || ||| |||||| |||||||||| ||||||| |||||||||  | || |||||  ||| |  |    
T  64117 catatcaaagacgaattcttagagtagaagttcaacgggttgcatgcaagcttgagattcgaagaccttgtggctgtccaaatttaagaggccttgag-g 64215  T
Q  154 attggatatattgtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    ||| | | |  ||||| |  |||  ||||||||||| || |||||||| |||||||||| |||||||||||||||||||    
T  64216 atttgttcttgtgtgaattcttagtatagaagattgagattcaaaggaatctttgtaatcatacacttgtaaacatttt 64294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 54 - 232
Target Start/End: Complemental strand, 66250 - 66073
Alignment:
Q  54 catagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaag 153  Q
    |||| ||||||||| ||||  ||||||||| |||| || ||| |||||| |||||||||| ||||||| |||||||||  | || |||||  ||| |  |    
T  66250 catatcaaagacgaattcttagagtagaagttcaacgggttgcatgcaagcttgagattcgaagaccttgtggctgtccaaatttaagaggccttgag-g 66152  T
Q  154 attggatatattgtgattgattaacatagaagattgggaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    ||| | | |  ||||| |  |||  ||||||||||| || |||||||| |||||||||| |||||||||||||||||||    
T  66151 atttgttcttgtgtgaattcttagtatagaagattgagattcaaaggaatctttgtaatcatacacttgtaaacatttt 66073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 54 - 232
Target Start/End: Complemental strand, 14753431 - 14753253
Alignment:
Q  54 catagcaaagacgatttctcggagtagaagatcaaaggattgtatgcaaacttgagattcaaagacctcgtggctgtctgatttcaagagagcttaaaag 153  Q
    |||| ||||||||| ||||  ||||||||| ||||||||||| ||| || |||||  ||| ||||||| |||| ||||  || |||||||  |||  |||    
T  14753431 cataccaaagacgaattcttagagtagaagttcaaaggattgcatggaagcttgatgttcgaagaccttgtgggtgtccaatatcaagaggtctt-gaag 14753333  T
Q  154 attggatatattgtgattgattaacatagaagattgg-gaatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    |||| || |  |||||||| ||| || | |||||||| |||||||| || | |||||||| ||| |||||||||||||||    
T  14753332 attgaatcttgtgtgattgcttatcaaataagattggagaatcaaatgaatttttgtaatcatagacttgtaaacatttt 14753253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Complemental strand, 21487188 - 21487148
Alignment:
Q  192 aatcaaaggagtctttgtaattatacacttgtaaacatttt 232  Q
    |||| ||||| |||||||||| |||||||||||||||||||    
T  21487188 aatccaaggaatctttgtaatcatacacttgtaaacatttt 21487148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 135012 - 134974
Alignment:
Q  1 caaatggagatacttttcacctccaaaggtaattgtggg 39  Q
    |||| |||| |||||||||||||||||||||||||||||    
T  135012 caaaaggaggtacttttcacctccaaaggtaattgtggg 134974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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