View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_high_15 (Length: 262)

Name: NF10187_high_15
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_high_15
NF10187_high_15
[»] chr7 (9 HSPs)
chr7 (17-111)||(10980416-10980507)
chr7 (190-258)||(48104510-48104577)
chr7 (188-258)||(38193182-38193252)
chr7 (189-258)||(19272437-19272506)
chr7 (187-224)||(23371447-23371484)
chr7 (189-229)||(1594141-1594181)
chr7 (188-224)||(5909712-5909748)
chr7 (188-224)||(13279439-13279475)
chr7 (188-224)||(39580188-39580224)
[»] chr2 (10 HSPs)
chr2 (189-235)||(23260320-23260366)
chr2 (189-262)||(30371385-30371458)
chr2 (187-235)||(12028196-12028244)
chr2 (192-258)||(28484580-28484646)
chr2 (187-224)||(19641444-19641481)
chr2 (187-224)||(19840037-19840074)
chr2 (190-247)||(41089383-41089439)
chr2 (187-259)||(17920215-17920287)
chr2 (188-224)||(29835101-29835137)
chr2 (189-229)||(44241097-44241137)
[»] chr5 (5 HSPs)
chr5 (189-258)||(22551522-22551591)
chr5 (189-236)||(33052817-33052864)
chr5 (190-259)||(21149088-21149156)
chr5 (188-249)||(12823710-12823771)
chr5 (189-258)||(24098651-24098720)
[»] chr4 (5 HSPs)
chr4 (187-224)||(51965370-51965407)
chr4 (187-229)||(550671-550713)
chr4 (189-258)||(22272930-22272999)
chr4 (189-258)||(24215729-24215798)
chr4 (201-262)||(35904836-35904897)
[»] chr3 (8 HSPs)
chr3 (189-237)||(51460772-51460820)
chr3 (188-247)||(41749385-41749444)
chr3 (189-258)||(25110049-25110118)
chr3 (188-229)||(29184998-29185039)
chr3 (189-222)||(51252049-51252082)
chr3 (188-229)||(54567760-54567801)
chr3 (188-224)||(47115584-47115620)
chr3 (188-224)||(49880759-49880795)
[»] scaffold0384 (2 HSPs)
scaffold0384 (189-224)||(4249-4284)
scaffold0384 (188-224)||(4449-4485)
[»] chr8 (5 HSPs)
chr8 (193-247)||(34019123-34019177)
chr8 (187-224)||(960519-960556)
chr8 (189-258)||(4105268-4105336)
chr8 (188-224)||(27543647-27543683)
chr8 (189-229)||(39515139-39515179)
[»] chr1 (6 HSPs)
chr1 (208-262)||(1632337-1632391)
chr1 (192-262)||(2059410-2059480)
chr1 (189-247)||(30434280-30434338)
chr1 (189-262)||(36343154-36343228)
chr1 (189-258)||(26097015-26097084)
chr1 (188-236)||(46136085-46136133)
[»] scaffold0809 (1 HSPs)
scaffold0809 (190-235)||(4008-4053)
[»] scaffold0031 (1 HSPs)
scaffold0031 (187-224)||(1825-1862)
[»] chr6 (7 HSPs)
chr6 (187-224)||(10344048-10344085)
chr6 (188-229)||(14328663-14328704)
chr6 (188-229)||(14421673-14421714)
chr6 (189-229)||(3063500-3063540)
chr6 (188-224)||(13114397-13114433)
chr6 (184-236)||(22366228-22366280)
chr6 (188-236)||(24387771-24387819)
[»] scaffold0142 (1 HSPs)
scaffold0142 (188-224)||(34848-34884)
[»] scaffold0010 (1 HSPs)
scaffold0010 (188-224)||(26307-26343)


Alignment Details
Target: chr7 (Bit Score: 77; Significance: 8e-36; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 10980416 - 10980507
Alignment:
Q  17 cacagataacaacagcagagtgaactcaatctatgtcaaatataaataaaaaatatatctatattattttatggtctgtgtgtaaataaatgtaa 111  Q
    |||||||| |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10980416 cacagatagcaacagcag---gaactcaatctatgtcaaatataaataaaaaatatatctatattattttatggtctgtgtgtaaataaatgtaa 10980507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 48104510 - 48104577
Alignment:
Q  190 ggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttt 258  Q
    ||||||||||||||||| || |||||||||||||| ||||| ||||||  |||||||| | ||||||||    
T  48104510 ggttaataggtctttacccc-tgtaatataggtcattttttgttttctcccctgtaaaatttttatttt 48104577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 188 - 258
Target Start/End: Complemental strand, 38193252 - 38193182
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttt 258  Q
    ||||||||||||||||||| || |||||||||||||| || |  ||||||  |||||||| | ||||||||    
T  38193252 tgggttaataggtctttaccccctgtaatataggtcatttctggttttctcccctgtaaaatttttatttt 38193182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 19272506 - 19272437
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttt 258  Q
    |||||||||||||||||| || |||||||||||||| ||||  |||||  || |||||| | ||||||||    
T  19272506 gggttaataggtctttaccccctgtaatataggtcatttttggttttccctcatgtaaaatttttatttt 19272437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 23371447 - 23371484
Alignment:
Q  187 atgggttaataggtctttactccgtgtaatataggtca 224  Q
    |||||||||||||||||||| || ||||||||||||||    
T  23371447 atgggttaataggtctttaccccctgtaatataggtca 23371484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 1594181 - 1594141
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttt 229  Q
    |||||||||||||||||| || |||||||||||||| ||||    
T  1594181 gggttaataggtctttaccccctgtaatataggtcactttt 1594141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 5909712 - 5909748
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtca 224  Q
    ||||||||||||||||||| || ||||||||||||||    
T  5909712 tgggttaataggtctttaccccatgtaatataggtca 5909748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 13279475 - 13279439
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtca 224  Q
    ||||||||||||||||||| || ||||||||||||||    
T  13279475 tgggttaataggtctttaccccctgtaatataggtca 13279439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 39580224 - 39580188
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtca 224  Q
    ||||||||||||||||||| || ||||||||||||||    
T  39580224 tgggttaataggtctttaccccctgtaatataggtca 39580188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 189 - 235
Target Start/End: Original strand, 23260320 - 23260366
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttttatttt 235  Q
    ||||||||||||||||||||| |||||||||||||| ||||||||||    
T  23260320 gggttaataggtctttactccctgtaatataggtcattttttatttt 23260366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 30371385 - 30371458
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttttatt 262  Q
    ||||||||||||||||||||| |||||||||||||| ||||  |||||   |||||||| | ||||||||||||    
T  30371385 gggttaataggtctttactccctgtaatataggtcatttttggttttcccccctgtaaaatttttatttttatt 30371458  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 187 - 235
Target Start/End: Original strand, 12028196 - 12028244
Alignment:
Q  187 atgggttaataggtctttactccgtgtaatataggtcagtttttatttt 235  Q
    |||||||||||||||||||| || |||||||||||||| |||| |||||    
T  12028196 atgggttaataggtctttacaccctgtaatataggtcatttttgatttt 12028244  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 258
Target Start/End: Complemental strand, 28484646 - 28484580
Alignment:
Q  192 ttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttt 258  Q
    |||||||||||||||||| |||||||||||||| ||||  |||||   |||||||| | ||||||||    
T  28484646 ttaataggtctttactccctgtaatataggtcatttttggttttccgccctgtaaaatttttatttt 28484580  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 19641444 - 19641481
Alignment:
Q  187 atgggttaataggtctttactccgtgtaatataggtca 224  Q
    |||||||||||||||||||| || ||||||||||||||    
T  19641444 atgggttaataggtctttaccccctgtaatataggtca 19641481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 19840037 - 19840074
Alignment:
Q  187 atgggttaataggtctttactccgtgtaatataggtca 224  Q
    |||||||||||||||||||| || ||||||||||||||    
T  19840037 atgggttaataggtctttaccccctgtaatataggtca 19840074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 247
Target Start/End: Complemental strand, 41089439 - 41089383
Alignment:
Q  190 ggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaa 247  Q
    ||||||||||||||||| || ||||||||| |||| ||||| ||||| ||||||||||    
T  41089439 ggttaataggtctttac-ccctgtaatataagtcattttttgttttccttcctgtaaa 41089383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 259
Target Start/End: Complemental strand, 17920287 - 17920215
Alignment:
Q  187 atgggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttattttt 259  Q
    |||||||||| |  |||||| || |||||||||||||| ||||  ||||||| |||||||||| ||| |||||    
T  17920287 atgggttaatggtgctttaccccctgtaatataggtcatttttagttttcttccctgtaaatttttttttttt 17920215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 29835101 - 29835137
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtca 224  Q
    ||||||||||||||||||| || ||||||||||||||    
T  29835101 tgggttaataggtctttaccccctgtaatataggtca 29835137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 44241097 - 44241137
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttt 229  Q
    ||||||||||| ||||||||| |||||||||||||| ||||    
T  44241097 gggttaataggactttactccctgtaatataggtcattttt 44241137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 22551522 - 22551591
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttt 258  Q
    |||||||||||||||||| || |||||||||||||| ||||||||||   ||||||||| | ||||||||    
T  22551522 gggttaataggtctttaccccctgtaatataggtcattttttatttttcctcctgtaaaatttttatttt 22551591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 189 - 236
Target Start/End: Original strand, 33052817 - 33052864
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttttattttc 236  Q
    |||||||||||||||||| || |||||||||||||| |||||||||||    
T  33052817 gggttaataggtctttaccccttgtaatataggtcattttttattttc 33052864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 190 - 259
Target Start/End: Complemental strand, 21149156 - 21149088
Alignment:
Q  190 ggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttattttt 259  Q
    ||||||||||||||||| || |||||||||||||| ||||  ||||||| |||||||| | |||||||||    
T  21149156 ggttaataggtctttacccc-tgtaatataggtcatttttggttttcttccctgtaaaatttttattttt 21149088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 12823771 - 12823710
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaatt 249  Q
    ||||||||||||| |||||  | || ||||||||||| ||||| |||||| |||||||||||    
T  12823771 tgggttaataggtttttacctcctgcaatataggtcattttttgttttctctcctgtaaatt 12823710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 24098720 - 24098651
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttt 258  Q
    |||||||||||||||||  || |||||||||||||| ||||  |||||  ||||||||| | ||||||||    
T  24098720 gggttaataggtctttagcccttgtaatataggtcatttttggttttccctcctgtaaaatttttatttt 24098651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 51965370 - 51965407
Alignment:
Q  187 atgggttaataggtctttactccgtgtaatataggtca 224  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  51965370 atgggttaataggtctttactccctgtaatataggtca 51965407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 229
Target Start/End: Original strand, 550671 - 550713
Alignment:
Q  187 atgggttaataggtctttactccgtgtaatataggtcagtttt 229  Q
    |||||||||||||||||||| || |||||||||||||| ||||    
T  550671 atgggttaataggtctttaccccctgtaatataggtcattttt 550713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 258
Target Start/End: Original strand, 22272930 - 22272999
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttt 258  Q
    |||||||||||| ||||| || |||||||||||||| |||   |||||  ||||||||||| ||||||||    
T  22272930 gggttaataggtttttaccccctgtaatataggtcattttcggttttccctcctgtaaattttttatttt 22272999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 24215798 - 24215729
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttt 258  Q
    |||||||||||||||||| || |||||||||||||| || |  ||||||  |||||||||| ||| ||||    
T  24215798 gggttaataggtctttaccccctgtaatataggtcatttctggttttctcccctgtaaattttttttttt 24215729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 201 - 262
Target Start/End: Complemental strand, 35904897 - 35904836
Alignment:
Q  201 ctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttttatt 262  Q
    ||||||||| |||||||||||||| |||||||||||   |||||||| | ||| ||||||||    
T  35904897 ctttactccctgtaatataggtcattttttattttcccccctgtaaaatatttttttttatt 35904836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 237
Target Start/End: Complemental strand, 51460820 - 51460772
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttttattttct 237  Q
    |||||||||||||||||| || |||||||||||||| ||||| ||||||    
T  51460820 gggttaataggtctttaccccctgtaatataggtcattttttgttttct 51460772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 41749385 - 41749444
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaa 247  Q
    |||||||||||| |||||| || |||||||||||||| |||| |||||||  ||||||||    
T  41749385 tgggttaataggcctttaccccttgtaatataggtcacttttgattttctcccctgtaaa 41749444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 25110118 - 25110049
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttt 258  Q
    |||||||||||||||||| || |||||||||||||| |||   ||||| | |||||||| | ||||||||    
T  25110118 gggttaataggtctttacaccctgtaatataggtcattttcggttttcctccctgtaaaatttttatttt 25110049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 29185039 - 29184998
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtcagtttt 229  Q
    |||||||||||| ||||||||| |||||||||||||| ||||    
T  29185039 tgggttaataggcctttactccctgtaatataggtcactttt 29184998  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 222
Target Start/End: Original strand, 51252049 - 51252082
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggt 222  Q
    ||||||||||||||||||||| ||||||||||||    
T  51252049 gggttaataggtctttactccctgtaatataggt 51252082  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 54567801 - 54567760
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtcagtttt 229  Q
    ||||||||||||||||||| || |||||||||||||| ||||    
T  54567801 tgggttaataggtctttaccccctgtaatataggtcactttt 54567760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 47115620 - 47115584
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtca 224  Q
    ||||||||||||||||||| || ||||||||||||||    
T  47115620 tgggttaataggtctttaccccctgtaatataggtca 47115584  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 49880795 - 49880759
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtca 224  Q
    ||||||||||||||||||| || ||||||||||||||    
T  49880795 tgggttaataggtctttaccccctgtaatataggtca 49880759  T

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Target: scaffold0384 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 189 - 224
Target Start/End: Original strand, 4249 - 4284
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtca 224  Q
    ||||||||||||||||||||| ||||||||||||||    
T  4249 gggttaataggtctttactccctgtaatataggtca 4284  T

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Target: scaffold0384; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 4485 - 4449
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtca 224  Q
    ||||||||||||||||||| || ||||||||||||||    
T  4485 tgggttaataggtctttaccccctgtaatataggtca 4449  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 193 - 247
Target Start/End: Complemental strand, 34019177 - 34019123
Alignment:
Q  193 taataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaa 247  Q
    |||||||||||||  || |||||||||||||| ||||||||||| | ||||||||    
T  34019177 taataggtctttatcccctgtaatataggtcattttttattttcatccctgtaaa 34019123  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Complemental strand, 960556 - 960519
Alignment:
Q  187 atgggttaataggtctttactccgtgtaatataggtca 224  Q
    |||||||||||||||||||| || ||||||||||||||    
T  960556 atgggttaataggtctttaccccctgtaatataggtca 960519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 4105336 - 4105268
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttt 258  Q
    |||||||||||||||||| || |||||||||||||| ||||| ||||||   ||||||| | ||||||||    
T  4105336 gggttaataggtctttacccc-tgtaatataggtcattttttgttttctcctctgtaaaatttttatttt 4105268  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 27543683 - 27543647
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtca 224  Q
    ||||||||||||||||||| || ||||||||||||||    
T  27543683 tgggttaataggtctttaccccctgtaatataggtca 27543647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 39515179 - 39515139
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttt 229  Q
    ||||||||||| ||||||||| |||||||||||||| ||||    
T  39515179 gggttaataggcctttactccctgtaatataggtcactttt 39515139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 208 - 262
Target Start/End: Original strand, 1632337 - 1632391
Alignment:
Q  208 ccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttttatt 262  Q
    ||||||||||||||||| ||||||||||| | |||||||| | ||| ||||||||    
T  1632337 ccgtgtaatataggtcattttttattttcctccctgtaaaatatttttttttatt 1632391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 262
Target Start/End: Complemental strand, 2059480 - 2059410
Alignment:
Q  192 ttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttttatt 262  Q
    ||||||||||||||| || |||||||||||||| || | ||||||  ||||||||| | ||| ||||||||    
T  2059480 ttaataggtctttaccccctgtaatataggtcatttctgattttccctcctgtaaaatatttttttttatt 2059410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 247
Target Start/End: Original strand, 30434280 - 30434338
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaa 247  Q
    |||||||| ||||||||| || |||||||||||||| ||||| ||||||| | ||||||    
T  30434280 gggttaatcggtctttaccccctgtaatataggtcattttttgttttcttccttgtaaa 30434338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 189 - 262
Target Start/End: Original strand, 36343154 - 36343228
Alignment:
Q  189 gggttaataggtctttactc-cgtgtaatataggtcagtttttattttctttcctgtaaattctttatttttatt 262  Q
    |||||||||||||||||| | | |||||||||||||| ||||| |||||   |||||||||| ||| ||||||||    
T  36343154 gggttaataggtctttaccctcctgtaatataggtcattttttgttttcccccctgtaaattttttttttttatt 36343228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 258
Target Start/End: Complemental strand, 26097084 - 26097015
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttttattttctttcctgtaaattctttatttt 258  Q
    |||||||||||||||||| || |||||||||||||| ||||  ||||   ||||||||||| ||| ||||    
T  26097084 gggttaataggtctttaccccctgtaatataggtcacttttggttttgcctcctgtaaattttttttttt 26097015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 46136085 - 46136133
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtcagtttttattttc 236  Q
    |||||||||| |||||||| || |||||||||||||| ||||| |||||    
T  46136085 tgggttaataagtctttaccccctgtaatataggtcattttttgttttc 46136133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0809 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0809
Description:

Target: scaffold0809; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 235
Target Start/End: Complemental strand, 4053 - 4008
Alignment:
Q  190 ggttaataggtctttactccgtgtaatataggtcagtttttatttt 235  Q
    ||||||||||||||||| || |||||||||| ||| ||||||||||    
T  4053 ggttaataggtctttaccccctgtaatatagatcattttttatttt 4008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 1825 - 1862
Alignment:
Q  187 atgggttaataggtctttactccgtgtaatataggtca 224  Q
    |||||||||||||||||||| || ||||||||||||||    
T  1825 atgggttaataggtctttaccccctgtaatataggtca 1862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 187 - 224
Target Start/End: Original strand, 10344048 - 10344085
Alignment:
Q  187 atgggttaataggtctttactccgtgtaatataggtca 224  Q
    |||||||||||||||||||| || ||||||||||||||    
T  10344048 atgggttaataggtctttaccccctgtaatataggtca 10344085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 14328704 - 14328663
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtcagtttt 229  Q
    ||||||||||||||||||| || |||||||||||||| ||||    
T  14328704 tgggttaataggtctttaccccctgtaatataggtcactttt 14328663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 188 - 229
Target Start/End: Complemental strand, 14421714 - 14421673
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtcagtttt 229  Q
    ||||||||||||||||||| || |||||||||||||| ||||    
T  14421714 tgggttaataggtctttaccccctgtaatataggtcactttt 14421673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Complemental strand, 3063540 - 3063500
Alignment:
Q  189 gggttaataggtctttactccgtgtaatataggtcagtttt 229  Q
    |||||||||||||||||| || |||||||||||||| ||||    
T  3063540 gggttaataggtctttaccccctgtaatataggtcactttt 3063500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 13114397 - 13114433
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtca 224  Q
    ||||||||||||||||||| || ||||||||||||||    
T  13114397 tgggttaataggtctttaccccctgtaatataggtca 13114433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 22366280 - 22366228
Alignment:
Q  184 aagatgggttaataggtctttactccgtgtaatataggtcagtttttattttc 236  Q
    |||| |||||||||||||||||| || || ||||||||||| |||| ||||||    
T  22366280 aagaagggttaataggtctttaccccctgcaatataggtcacttttgattttc 22366228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 24387819 - 24387771
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtcagtttttattttc 236  Q
    ||||||||||||||||||| || |||||||||||| | |||| ||||||    
T  24387819 tgggttaataggtctttaccccctgtaatataggttatttttaattttc 24387771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Complemental strand, 34884 - 34848
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtca 224  Q
    ||||||||||||||||||| || ||||||||||||||    
T  34884 tgggttaataggtctttaccccctgtaatataggtca 34848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 224
Target Start/End: Original strand, 26307 - 26343
Alignment:
Q  188 tgggttaataggtctttactccgtgtaatataggtca 224  Q
    ||||||||||||||||||| || ||||||||||||||    
T  26307 tgggttaataggtctttaccccctgtaatataggtca 26343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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