View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_high_24 (Length: 239)

Name: NF10187_high_24
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_high_24
NF10187_high_24
[»] chr5 (1 HSPs)
chr5 (4-223)||(8341736-8341955)
[»] chr8 (8 HSPs)
chr8 (7-208)||(4426824-4427025)
chr8 (6-134)||(17478716-17478844)
chr8 (8-134)||(32848893-32849019)
chr8 (6-197)||(29585084-29585279)
chr8 (6-173)||(4442393-4442563)
chr8 (7-134)||(4432805-4432932)
chr8 (7-197)||(4409974-4410164)
chr8 (61-133)||(20513204-20513276)
[»] chr4 (3 HSPs)
chr4 (6-111)||(8382227-8382332)
chr4 (6-113)||(8366224-8366331)
chr4 (7-134)||(46839700-46839827)


Alignment Details
Target: chr5 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 4 - 223
Target Start/End: Original strand, 8341736 - 8341955
Alignment:
Q  4 agctttattgaatttaaaggatttcgaggatttccagatgaggtttcttttgttgagtatgttttgcaaaatggacatgttttaaagacgttgattattg 103  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341736 agctttattgaatttaaaggatttcgaggatttccagatgaggtttcatttgttgagtatgttttgcaaaatggacatgttttaaagacgttgattattg 8341835  T
Q  104 ctgatatttccttggacctaaaaaagaagtatctcattctcaagttagtatctgatgtgccaagggcctctgcaatgtgccaactgaaatttgattgaac 203  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8341836 ctgatatttccttggacctaaaaaagaagtatctcattctcaagttagtatctgatgtgccaagggcctctgcaatgtgccaactgaaatttgattgaac 8341935  T
Q  204 tgtatctccttactatatat 223  Q
    ||||||||||||||||||||    
T  8341936 tgtatctccttactatatat 8341955  T

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Target: chr8 (Bit Score: 98; Significance: 2e-48; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 208
Target Start/End: Complemental strand, 4427025 - 4426824
Alignment:
Q  7 tttattgaatttaaaggatttcgaggatttccagatgaggtttcttttgttgagtatgttttgcaaaatggacatgttttaaagacgttgattattgctg 106  Q
    |||||| |||||||||||||||| |||||| |||||||||| || |||| |||||||||||| ||||| |||| |||||||||||| |||||||||||||    
T  4427025 tttattcaatttaaaggatttcgtggattttcagatgaggtgtcatttgctgagtatgttttacaaaaaggacttgttttaaagacattgattattgctg 4426926  T
Q  107 atatttccttggacctaaaaaagaagtatctcattctcaagttagtatctgatgtgccaagggcctctgcaatgtgccaactgaaatttgattgaactgt 206  Q
    |||||||| ||||| ||||  |||||||   |||||||||   | |||||||||||||||||||||| | |||||| ||||| |||||||| ||||||||    
T  4426925 atatttccgtggacttaaaggagaagtacgacattctcaaaacaatatctgatgtgccaagggcctcaggaatgtgtcaacttaaatttgactgaactgt 4426826  T
Q  207 at 208  Q
    ||    
T  4426825 at 4426824  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 17478716 - 17478844
Alignment:
Q  6 ctttattgaatttaaaggatttcgaggatttccagatgaggtttcttttgttgagtatgttttgcaaaatggacatgttttaaagacgttgattattgct 105  Q
    ||||||| ||||||||||| | |||||||||||||||||||| || ||||| |||||||||||||||||||||| ||||||||| ||  |||||||||||    
T  17478716 ctttattcaatttaaaggactgcgaggatttccagatgaggtgtcatttgtcgagtatgttttgcaaaatggacttgttttaaaaacaatgattattgct 17478815  T
Q  106 gatatttccttggacctaaaaaagaagta 134  Q
    | ||  |||||||||||| ||||||||||    
T  17478816 gttagatccttggacctagaaaagaagta 17478844  T

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Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 32849019 - 32848893
Alignment:
Q  8 ttattgaatttaaaggatttcgaggatttccagatgaggtttcttttgttgagtatgttttgcaaaatggacatgttttaaagacgttgattattgctga 107  Q
    |||| ||||||||||||||| |||||| ||| ||||||||||| ||||||||| ||||||||||||| |||| |||||||||||| ||||||||  ||||    
T  32849019 ttatagaatttaaaggatttagaggatctccggatgaggtttcatttgttgagcatgttttgcaaaaaggacttgttttaaagacattgattatctctga 32848920  T
Q  108 tatttccttggacctaaaaaagaagta 134  Q
    |||||||||| ||| ||  ||||||||    
T  32848919 tatttccttgaaccaaagtaagaagta 32848893  T

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Target: chr8; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 6 - 197
Target Start/End: Complemental strand, 29585279 - 29585084
Alignment:
Q  6 ctttattgaatttaaaggatttcgaggatttccagatgaggtttcttttgttgagtatgttttgcaaaatggacatgttttaaagac---gttgattatt 102  Q
    ||||||| ||||||||| ||||| |||||||||||||||||| || |||||||||  |||||||||||| ||||  |||||| ||||   | |||||| |    
T  29585279 ctttattcaatttaaagaatttcaaggatttccagatgaggtgtcatttgttgagcttgttttgcaaaaaggactcgttttagagacaatgatgattact 29585180  T
Q  103 gctgatatttccttggacctaaaaaagaagtatctcattctc-aagttagtatctgatgtgccaagggcctctgcaatgtgccaactgaaatttga 197  Q
    ||||||| ||| ||||||||||| |||||| |   ||||||| ||   | ||||||||||||||||| |||| | |||||| ||||| ||||||||    
T  29585179 gctgatagttcattggacctaaagaagaagcacgacattctcaaaaacattatctgatgtgccaaggacctcaggaatgtgtcaacttaaatttga 29585084  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 6 - 173
Target Start/End: Original strand, 4442393 - 4442563
Alignment:
Q  6 ctttattgaatttaaaggatttcgaggatttccagatgaggtttcttttgttgagtatgttttgcaaaatggacatgttttaaagac---gttgattatt 102  Q
    ||||||| ||||||||||||||  |||||| ||||||||||| || ||||||||| ||||||||||| | |||   |||||||||||     ||||||||    
T  4442393 ctttattcaatttaaaggatttttaggattaccagatgaggtgtcatttgttgagcatgttttgcaagaaggattggttttaaagacaataatgattatt 4442492  T
Q  103 gctgatatttccttggacctaaaaaagaagtatctcattctcaagttagtatctgatgtgccaagggcctc 173  Q
     ||||||||||||| |||| ||  |||||||||  |||||||||   | ||||  ||||||||||||||||    
T  4442493 tctgatatttccttagaccaaagtaagaagtatgacattctcaaaagattatcgaatgtgccaagggcctc 4442563  T

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Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 7 - 134
Target Start/End: Original strand, 4432805 - 4432932
Alignment:
Q  7 tttattgaatttaaaggatttcgaggatttccagatgaggtttcttttgttgagtatgttttgcaaaatggacatgttttaaagacgttgattattgctg 106  Q
    |||||| | ||||||||||||  |||| ||||||||||| | |  |||| ||||||| || ||||||| |||| |||||| |||||  ||||||||| ||    
T  4432805 tttattcagtttaaaggatttaaaggagttccagatgagctattatttgctgagtatattctgcaaaaaggacttgttttgaagacaatgattattgatg 4432904  T
Q  107 atatttccttggacctaaaaaagaagta 134  Q
    |||||||  |||||||||  ||||||||    
T  4432905 atatttcagtggacctaagcaagaagta 4432932  T

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Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 4409974 - 4410164
Alignment:
Q  7 tttattgaatttaaaggatttcgaggatttccagatgaggtttcttttgttgagtatgttttgcaaaatggacatgttttaaagacgttgattattgctg 106  Q
    |||||| |||||||||| | || |||| ||||||||||| | |  |||||||||||| |||||| |||||||  || ||| |||||  || ||||| |||    
T  4409974 tttattcaatttaaaggctatcaaggacttccagatgagttgttatttgttgagtatattttgcgaaatggatttgctttgaagacaatggttatttctg 4410073  T
Q  107 atatttccttggacctaaaaaagaagtatctcattctcaagttagtatctgatgtgccaagggcctctgcaatgtgccaactgaaatttga 197  Q
    |||||||  ||||| |||  |||||| ||  |||| ||||   | ||||| |||||||||||||||||| ||  |||||||| | ||||||    
T  4410074 atatttcggtggacataaccaagaagaatgccattttcaaaagattatctaatgtgccaagggcctctggaaattgccaacttatatttga 4410164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 133
Target Start/End: Complemental strand, 20513276 - 20513204
Alignment:
Q  61 tatgttttgcaaaatggacatgttttaaagacgttgattattgctgatatttccttggacctaaaaaagaagt 133  Q
    ||||||||||||||||||| |||||||||||   |||||||| ||| | |||  ||||||| ||| |||||||    
T  20513276 tatgttttgcaaaatggacttgttttaaagaaaatgattatttctggtgttttgttggaccaaaagaagaagt 20513204  T

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Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 6 - 111
Target Start/End: Complemental strand, 8382332 - 8382227
Alignment:
Q  6 ctttattgaatttaaaggatttcgaggatttccagatgaggtttcttttgttgagtatgttttgcaaaatggacatgttttaaagacgttgattattgct 105  Q
    ||||||||||||||||||||||||||| ||| |||||||| | || ||||||||| ||||||||||||| |||| ||||||||||||  |||||||||||    
T  8382332 ctttattgaatttaaaggatttcgaggtttttcagatgagatatcatttgttgaggatgttttgcaaaaaggacttgttttaaagacagtgattattgct 8382233  T
Q  106 gatatt 111  Q
    ||||||    
T  8382232 gatatt 8382227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 6 - 113
Target Start/End: Complemental strand, 8366331 - 8366224
Alignment:
Q  6 ctttattgaatttaaaggatttcgaggatttccagatgaggtttcttttgttgagtatgttttgcaaaatggacatgttttaaagacgttgattattgct 105  Q
    ||||||| ||||||||  ||||| ||||||| |||||||| |  | ||| ||||| ||||||||||||| |||| ||||||||||||  |||||||||||    
T  8366331 ctttattcaatttaaaaaatttcaaggattttcagatgagataacatttattgagcatgttttgcaaaaaggacttgttttaaagacagtgattattgct 8366232  T
Q  106 gatatttc 113  Q
    ||||||||    
T  8366231 gatatttc 8366224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 46839827 - 46839700
Alignment:
Q  7 tttattgaatttaaaggatttcgaggatttccagatgaggtttcttttgttgagtatgttttgcaaaatggacatgttttaaagacgttgattattgctg 106  Q
    |||||| | |||||| ||| || |||| ||||||||||| | |  |||||||||||| ||||| |||| |||| |||||| |||||  ||||||||| ||    
T  46839827 tttattcagtttaaatgatatcaaggacttccagatgagctattatttgttgagtatattttgaaaaaaggacttgttttgaagacaatgattattgatg 46839728  T
Q  107 atatttccttggacctaaaaaagaagta 134  Q
    ||||||| ||||||||||  ||||||||    
T  46839727 atatttcattggacctaagtaagaagta 46839700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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