View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_high_27 (Length: 235)

Name: NF10187_high_27
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_high_27
NF10187_high_27
[»] chr1 (1 HSPs)
chr1 (114-223)||(29160683-29160791)


Alignment Details
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 114 - 223
Target Start/End: Complemental strand, 29160791 - 29160683
Alignment:
Q  114 ctacaattgaattgcagcatctttgtggattagttattttgatttgatttctaannnnnnnnggttacggatcagtgattttgtacgataatttaacatc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||| ||||||||||||||||||||||||||||||||    
T  29160791 ctacaattgaattgcagcatctttgtggattagttattttgatttgatttctaa-tttttttggttaaggatcagtgattttgtacgataatttaacatc 29160693  T
Q  214 aattcattat 223  Q
    ||||||||||    
T  29160692 aattcattat 29160683  T

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