View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_high_29 (Length: 228)
Name: NF10187_high_29
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_high_29 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 40864698 - 40864898
Alignment:
| Q |
18 |
agttgccaataagctaggaatgaactcataacagtgaaggaaggagaatgaatatatttagcaaaaagagaggcttagagagctctcgctttcacaatgt |
117 |
Q |
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| T |
40864698 |
agttgccaataagctaggaatgaactcataacagtgaaggaaggagaatgaatatatttagcaaaaagagaggcttagagggctctcgctttcacaatgt |
40864797 |
T |
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| Q |
118 |
ccaagctcatctcacttggatcagttgcttgcagttcaacttgaatgccatccaattctctcttgaatctatccttggaacttgcatacaccatcttcat |
217 |
Q |
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| T |
40864798 |
ccaagctcatctcacttggatcagttgcttgcagttcaacttgaatgccatccaattctctcttgaatctatccttggaacttgcatacaccatcttcat |
40864897 |
T |
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| Q |
218 |
c |
218 |
Q |
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| T |
40864898 |
c |
40864898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 214
Target Start/End: Original strand, 36528985 - 36529073
Alignment:
| Q |
126 |
atctcacttggatcagttgcttgcagttcaacttgaatgccatccaattctctcttgaatctatccttggaacttgcatacaccatctt |
214 |
Q |
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| T |
36528985 |
atctcagtaggatcagttgcttgcaactcaatctgaataccatcaagctctctcttgaatctatctttggagcttgcataaatcatctt |
36529073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 106 - 218
Target Start/End: Complemental strand, 2791208 - 2791096
Alignment:
| Q |
106 |
ctttcacaatgtccaagctcatctcacttggatcagttgcttgcagttcaacttgaatgccatccaattctctcttgaatctatccttggaacttgcata |
205 |
Q |
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| T |
2791208 |
ctttcacgatgtccaagctcatctcacttggatcagttgcttggagttcaacttgaatgccatccaactccctcttgaatctatccttagaacttgcata |
2791109 |
T |
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| Q |
206 |
caccatcttcatc |
218 |
Q |
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| T |
2791108 |
caccatcttcatc |
2791096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 45483652 - 45483558
Alignment:
| Q |
120 |
aagctcatctcacttggatcagttgcttgcagttcaacttgaatgccatccaattctctcttgaatctatccttggaacttgcatacaccatctt |
214 |
Q |
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|||||||| ||||| ||||| |||||||||| ||||||||||||||||| | ||| ||||||||||| ||||||| || |||||||||||||| |
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| T |
45483652 |
aagctcatttcactaggatctgttgcttgcaactcaacttgaatgccatcaagttccctcttgaatctgtccttggtgctagcatacaccatctt |
45483558 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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