View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10187_high_3 (Length: 384)
Name: NF10187_high_3
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 368
Target Start/End: Complemental strand, 3238489 - 3238135
Alignment:
| Q |
14 |
aacctgtgcattacctaaagtacaggttgatcgagcatttgtgtctataattctttttataactttgaagattggcgactagagataatcattttaggtg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3238489 |
aacctgtgcattacctaaagtacaggttgatcgagcatttgtgtctataattctttttataactttgaagattggcgactagagataatcattttaggtg |
3238390 |
T |
|
| Q |
114 |
gaagaatttattaaatagcggctgcagcggtactatagatagcgaatttgaactaatcgctattgttctgcaatatgttaattagtacaaaatacagcgg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3238389 |
gaagaatttattaaatagcggctgcagcggtactatagatagcgaatttgaactaatcgctattgttctgcaatatgttaattagtacaaaatacagcgg |
3238290 |
T |
|
| Q |
214 |
caatagcgacactatagacctgttgcaaatcgaaatttgaatgagctgctattttccgcgatcggggattgatagacaacatcaaatatgttatattatg |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3238289 |
caatagcgacactatagacctgttgcaaatcgaaatttgaatgagctgctattttccgcgatcggggattgatagacaacatcaaatatgttatattatg |
3238190 |
T |
|
| Q |
314 |
attattattctatgtttgatacacatctaataacaaacagatagcgtgtgtatat |
368 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3238189 |
attattattctatgtttgatacacatctaataacaaacagatagcgtgtgtatat |
3238135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 204
Target Start/End: Complemental strand, 48198123 - 48198079
Alignment:
| Q |
160 |
tttgaactaatcgctattgttctgcaatatgttaattagtacaaa |
204 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||| |
|
|
| T |
48198123 |
tttgaactaatcgctattgttctgtgatatgttatttagtacaaa |
48198079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 203
Target Start/End: Complemental strand, 16169232 - 16169188
Alignment:
| Q |
159 |
atttgaactaatcgctattgttctgcaatatgttaattagtacaa |
203 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| || | ||||||| |
|
|
| T |
16169232 |
atttgaactaatcgctattgttctgcgatatgctattgagtacaa |
16169188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 207
Target Start/End: Original strand, 20981269 - 20981319
Alignment:
| Q |
157 |
gaatttgaactaatcgctattgttctgcaatatgttaattagtacaaaata |
207 |
Q |
| |
|
||||||||||||||| |||||||||||||||| | || |||||| |||||| |
|
|
| T |
20981269 |
gaatttgaactaatcactattgttctgcaatacgctatttagtataaaata |
20981319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 206
Target Start/End: Complemental strand, 39647189 - 39647140
Alignment:
| Q |
157 |
gaatttgaactaatcgctattgttctgcaatatgttaattagtacaaaat |
206 |
Q |
| |
|
|||||||||| ||||| ||||||||||| ||||| || |||||||||||| |
|
|
| T |
39647189 |
gaatttgaacaaatcgttattgttctgcgatatgctatttagtacaaaat |
39647140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 204
Target Start/End: Original strand, 55314496 - 55314542
Alignment:
| Q |
158 |
aatttgaactaatcgctattgttctgcaatatgttaattagtacaaa |
204 |
Q |
| |
|
||||||||| ||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
55314496 |
aatttgaacaaattgctattgttctgcgatatgctaattagtacaaa |
55314542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 2732936 - 2732984
Alignment:
| Q |
158 |
aatttgaactaatcgctattgttctgcaatatgttaattagtacaaaat |
206 |
Q |
| |
|
||||||||| ||||||||||||| ||| ||||| || |||||||||||| |
|
|
| T |
2732936 |
aatttgaacaaatcgctattgttttgcgatatgctatttagtacaaaat |
2732984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University