View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_high_4 (Length: 373)

Name: NF10187_high_4
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_high_4
NF10187_high_4
[»] chr5 (3 HSPs)
chr5 (130-361)||(27244852-27245082)
chr5 (98-138)||(27245112-27245152)
chr5 (17-51)||(27245199-27245233)


Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 130 - 361
Target Start/End: Complemental strand, 27245082 - 27244852
Alignment:
Q  130 taattggtaagtatgtatcatctaaacattgattcaaaccttttctaatgcgtcttctgcattttgggcaatcttctctacatcttctgctacgttttca 229  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  27245082 taattggta-gtatgtatcatctaaacattgattcaaaccttttctaatgcgtcttctgcattttgagcaatcttctctacatcttctgctacgttttca 27244984  T
Q  230 acaaattcagcaacaactcgtcgttttcctttgggaagattctttacagttctttctgccatcttgtccaccctttcagccacttcttctacaatgtttg 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27244983 acaaattcagcaacaactcgtcgttttcctttgggaagattctttgcagttctttctgccatcttgtccaccctttcagccacttcttccacaatgtttg 27244884  T
Q  330 ctacttgttctgcgttttctattgttgtttca 361  Q
    ||||||||||||| ||||||||||||||||||    
T  27244883 ctacttgttctgctttttctattgttgtttca 27244852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 27245152 - 27245112
Alignment:
Q  98 cccatggacatataaattatgtttcttaaaagtaattggta 138  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  27245152 cccatggacgtataaattatgtttcttaaaagtaattggta 27245112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 27245233 - 27245199
Alignment:
Q  17 aaactaagcagaaactaagacgtaaagaatgtctt 51  Q
    |||||||||||||||||||||||||||||||||||    
T  27245233 aaactaagcagaaactaagacgtaaagaatgtctt 27245199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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