View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_1 (Length: 711)
Name: NF10187_low_1
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 627; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 627; E-Value: 0
Query Start/End: Original strand, 14 - 692
Target Start/End: Complemental strand, 29321220 - 29320543
Alignment:
| Q |
14 |
caaagggaaggtatgtatgcatatatatgatatatgatattgaataagcttttaagctcaagtgttttcttgatgatgcattaccttatagaaatcatgc |
113 |
Q |
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| T |
29321220 |
caaagggaaggtatgtatgcatatatatgatatatgatattgaataagcttttaagctcaagtgttttcttgatgatgcattaccttatagaaatcatgc |
29321121 |
T |
|
| Q |
114 |
catgtcaagtaatttttctgtgtactctgtagaacattgtttccagaagcaaatacgtgtttctaagcattacnnnnnnnntgattaaggataaatcgtg |
213 |
Q |
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| T |
29321120 |
catgtcaagtaatttttctgtgtactctgtagaacattgttttcagaagcaaatgcgtgtttctaagcattacaaaaaaaatgattaaggataaatcgtg |
29321021 |
T |
|
| Q |
214 |
tgagctagggtaaatcgtgataaaggatttaattaggtctgcagtcgtactgcattgtttgtaactttatgcagattaagttgtgcatttgtattttggt |
313 |
Q |
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| T |
29321020 |
tgagctagggtaaatcgtgataa-ggatttaattaggtctgcagtcgtactgcattgtttgtaactttatgcagattaagttgtgcatttgtattttggt |
29320922 |
T |
|
| Q |
314 |
ttctcttacagaaacctaaatcttaatgacaccaccgagttgtggactttcacttatcaatcaataatatttaacaaattaaaatctaatggattatgta |
413 |
Q |
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| T |
29320921 |
ttctcttacagaaacctaaatcttaatgacaccaccgagttgtggactttcacttatcaatcaataatatttaacaaattaaaatctaatggattatgta |
29320822 |
T |
|
| Q |
414 |
agttatcggatactcggcttgtaactctttgttggttacttgtatttgtgttattagaatggtatttattaatggatgcttgcaccatacattcctgtgc |
513 |
Q |
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| T |
29320821 |
agttatcagatactcggcttgtaactgtttgttggttacttgtatttgtgttattagaatggtatttattaatggatgcttgcaccatacattcctgtgc |
29320722 |
T |
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| Q |
514 |
ctgaagttgaccattacgaaccttcaataatatttgctgatttcatacatatcatgttatttgtaatgctaacaatctcattcatatacgattctctctt |
613 |
Q |
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| T |
29320721 |
ctgaagttgaccattacgaacctgcaataatatttgctgatttcatacatatcatgttatttgtaatgctaacaatctcattcatatacgattctctctt |
29320622 |
T |
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| Q |
614 |
cccttttgctaccacaggacatgatgctatactttaaccaagttgcgatgctggcccttaagtcactggatgatttgga |
692 |
Q |
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| T |
29320621 |
cccttttgctaccacaggacatgatgctatactttaaccaagttgcgatgctggcccttaagtcactggatgatttgga |
29320543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 579 - 686
Target Start/End: Complemental strand, 29331619 - 29331512
Alignment:
| Q |
579 |
atgctaacaatctcattcatatacgattctctcttcccttttgctaccacaggacatgatgctatactttaaccaagttgcgatgctggcccttaagtca |
678 |
Q |
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| T |
29331619 |
atgctaataatttcattcatatatgattctctcttccattttgctaccacaggacatgatgctatactttaacgaagttgcgatactggtccttaagtca |
29331520 |
T |
|
| Q |
679 |
ctggatga |
686 |
Q |
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|||||||| |
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| T |
29331519 |
ctggatga |
29331512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 273 - 502
Target Start/End: Complemental strand, 29303637 - 29303390
Alignment:
| Q |
273 |
tgtaactttatgcagattaagttgtgcatttgtattttggtttctcttacagaaacctaaatcttaatgacaccaccgagtt------------------ |
354 |
Q |
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|||| |||||||||||| ||||| |||||||||||||| |||||||||||| || ||||||| ||||||||||| ||||||| |
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| T |
29303637 |
tgtagctttatgcagatgaagttttgcatttgtattttagtttctcttacacaagcctaaattttaatgacacccccgagtttaaataatttcattctat |
29303538 |
T |
|
| Q |
355 |
gtggactttcacttatcaatcaataatatttaacaaattaaaatctaatggattatgtaagttatcggatactcggcttgtaactctttgttggttactt |
454 |
Q |
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| T |
29303537 |
gtggactttcacttatcaatcagtaatatttaacaaattaaaatctaacggattatacgagatatcagatactcagtttgtaactcttgcctggatactt |
29303438 |
T |
|
| Q |
455 |
gtatttgtgttattagaatggtatttattaatggatgcttgcaccata |
502 |
Q |
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|| | | || || |||| |||||||||||| |||| |||| |||||| |
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| T |
29303437 |
ataatcgcgtcatcagaacggtatttattaacggatacttgaaccata |
29303390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 546 - 687
Target Start/End: Complemental strand, 29303299 - 29303159
Alignment:
| Q |
546 |
tttgctgatttcatacatatcatgttatttgtaatgctaacaatctcattcatatacgattctctcttcccttttgctaccacaggacatgatgctatac |
645 |
Q |
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|||||||||||||| |||||| ||||||| || ||||| ||||| | ||| ||||| |||||| |||| ||||||| ||| |||||||||||| | ||| |
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| T |
29303299 |
tttgctgatttcattcatatcctgttattcgtgatgcttacaatttaatttatatatgattctttctt-ccttttggtactacaggacatgatacagtac |
29303201 |
T |
|
| Q |
646 |
tttaaccaagttgcgatgctggcccttaagtcactggatgat |
687 |
Q |
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||| |||||||||| | |||| |||||||| ||| |||||| |
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| T |
29303200 |
tttgaccaagttgcaagtctggtccttaagttacttgatgat |
29303159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 178
Target Start/End: Complemental strand, 29304045 - 29303885
Alignment:
| Q |
28 |
gtatgcatatatatgatatatgatattgaataagcttttaag-ctcaagtgttttcttgatgatgcattaccttatagaaa-----------tcatgcca |
115 |
Q |
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| T |
29304045 |
gtatgtatctatatgacatatgatattgaatgagctttgaactctcaattgttttttcgatgatgcattaccttgtagaaaaagcaatcatgtcatgtca |
29303946 |
T |
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| Q |
116 |
tgtcaagtaatttttctgtgtactctgtagaacattgtttccagaagcaaatacgtgtttcta |
178 |
Q |
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||||| |||||||| |||||||| ||||| |||||||||| ||||||| || ||||||||| |
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| T |
29303945 |
tgtcatgtaatttt--tgtgtactatgtagtacattgtttcgagaagcatgtatgtgtttcta |
29303885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 359 - 410
Target Start/End: Complemental strand, 29331875 - 29331824
Alignment:
| Q |
359 |
actttcacttatcaatcaataatatttaacaaattaaaatctaatggattat |
410 |
Q |
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| T |
29331875 |
actttctctgatcaatcaatagtatttaacaaataaaagtctaatggattat |
29331824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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