View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_10 (Length: 398)
Name: NF10187_low_10
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 12 - 384
Target Start/End: Complemental strand, 29646095 - 29645723
Alignment:
| Q |
12 |
cattaactacatgaatgcgtggacattgtgaccatagacgatccgaattaagaaattaccactaatgaggcaatgagcatgtgatatattgggaaatgtt |
111 |
Q |
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| T |
29646095 |
cattaactacatgaatgcgtggacattgtgaccatagacgatccgaattaagaaattaccactaatgaggcaatgagcatgtaatatattgggaaatttt |
29645996 |
T |
|
| Q |
112 |
atgagtatactcacaaatatgccagaggcaccaagtgccaaagccttgaagacatcggttccacggcgtacacctccatccaaaaatacaggaacacgac |
211 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
29645995 |
atgagtatacttacaaatatgccagaggcaccaagtgccaaagccttgaagacatcggttccacggcgtacacctccatccaaaaatacaggaacacggc |
29645896 |
T |
|
| Q |
212 |
cttgagcagctttcacaacctaagtagtttcaacggcacaattatgatataaacaatcttattgtgtagaatgatttatacaactcgattcagattaata |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29645895 |
cttgagcagctttcacaacctaagtagtttcaacggcacaattatgatataaacaatcttattgtgtagaatgatttatacaactcgattcagattaata |
29645796 |
T |
|
| Q |
312 |
ataacttggaatttttaaagtacctcttctaaggcacttatggtggctggaacataatcaagctgccttgctc |
384 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29645795 |
ataatttggaatttttaaagtacctcttctaaggcacttatggtggctggaacataatcaagctgccttgctc |
29645723 |
T |
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