View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_11 (Length: 397)
Name: NF10187_low_11
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 36457155 - 36457533
Alignment:
| Q |
1 |
attaataatgggtggtcatagaggctatcttggaagcgtaatgctattgattgggaggcctaactggtgcagaatttgaatacgctgctgctgtcagcgt |
100 |
Q |
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| T |
36457155 |
attaataatgggtggtcatagaggctatcttggaagcgtaatgctattgattgggaggcctaactggtgcagaatttgaatacgctgctgctgtcagcgt |
36457254 |
T |
|
| Q |
101 |
ctccaaggcaggaccagcctgatactgggtctggaaactagaatctacgcagagattcagctgcaaaagctgatgtagaatgctgtcagatttatatgca |
200 |
Q |
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| T |
36457255 |
ctccaaggcaggaccagcctgatactgggtctggaaactagagtctacacagagattcagctgcaaaagctgatgtagaatgctgtcagatttatatgca |
36457354 |
T |
|
| Q |
201 |
ggcgacgagtttagagcagcatatcacctaatttggcgatgtgtcgaaagtccaggttttcgggtggaagctcctgcagaagaggctgcagtcaatgttg |
300 |
Q |
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| T |
36457355 |
ggcgacgagtttaaagtagcatatcacctaatttggcgatgtgtcgaaagtccaggttttcgtgtggaagctcctgcagaagaggctgcagtcaatgttg |
36457454 |
T |
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| Q |
301 |
aatttaatcacaagaaacattatgcctgcggatcataattcatcctttgtgttctgttctgacaataattagagcgagg |
379 |
Q |
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| T |
36457455 |
aatttaatcacaagaaacattatgcctgcggatcataattcatcctttgtgttctgttctgacaataattagagcgagg |
36457533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 11629672 - 11629609
Alignment:
| Q |
315 |
aaacattatgcctgcggatcataattcatcctttgtgttctgttctgacaataattagagcgag |
378 |
Q |
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| T |
11629672 |
aaacattaggcctgcagatcataattcatcctttgtgttctgttccgacaataattagagcgag |
11629609 |
T |
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