View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_12 (Length: 387)

Name: NF10187_low_12
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_12
NF10187_low_12
[»] chr6 (3 HSPs)
chr6 (1-371)||(28883939-28884308)
chr6 (228-324)||(3637881-3637977)
chr6 (253-329)||(28884273-28884349)
[»] chr3 (2 HSPs)
chr3 (228-335)||(20302759-20302866)
chr3 (228-335)||(20327303-20327410)
[»] chr4 (1 HSPs)
chr4 (228-281)||(56074639-56074692)
[»] chr1 (3 HSPs)
chr1 (226-287)||(13046542-13046603)
chr1 (225-267)||(36580741-36580783)
chr1 (225-281)||(9487523-9487579)
[»] chr5 (2 HSPs)
chr5 (228-291)||(25076108-25076171)
chr5 (228-291)||(25134077-25134140)
[»] chr7 (1 HSPs)
chr7 (232-306)||(4880395-4880469)
[»] chr2 (1 HSPs)
chr2 (228-281)||(18612033-18612086)


Alignment Details
Target: chr6 (Bit Score: 323; Significance: 0; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 371
Target Start/End: Original strand, 28883939 - 28884308
Alignment:
Q  1 gtacactgtcggtgacagtttatggttgggatgacttcttgatttcaacaactggtcggcttgaaaaacagtttcatgttggtgattttcttggtaagag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28883939 gtacactgtcggtgacagtttatggttgggatgacttcttgatttcaacaactggtcggcttgaaaaacagtttcatgttggtgattttcttggtaagag 28884038  T
Q  101 tagagtttcacattcataaatggattgtgtttgttcatgcgtatgaacaaagataacttgttggaagactttgaaggtggtgctaaacacaatttcgagc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  28884039 tagagtttcacattcataaatggattgtgtttgttcatgcgtatgaacaaagataacttgtttgaagactttgaaggtggtgctaaacacaatttcgagc 28884138  T
Q  201 aaaataatactagtctattgtttcttattatgaatcatggaattatagggaagaaggtcataatgatcggccagaaagcaaatatagttccacttacgag 300  Q
    |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  28884139 aaaataatactagtttaatgtttcttattatgaatcatggaattatagggaagaaggtcataatgatcagccagaaagcaaatatagttccacttatgag 28884238  T
Q  301 ggagatactcgtagagattcatatagaatgaatatgaaggctataatgatcaacaagaaagcaaacatagt 371  Q
    |  ||||||||||||||||||||| |||||||||||||||| |||||||| | ||||||||||||||||||    
T  28884239 gttgatactcgtagagattcatat-gaatgaatatgaaggccataatgattagcaagaaagcaaacatagt 28884308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 228 - 324
Target Start/End: Complemental strand, 3637977 - 3637881
Alignment:
Q  228 ttatgaatcatggaattatagggaagaaggtcataatgatcggccagaaagcaaatatagttccacttacgagggagatactcgtagagattcatat 324  Q
    |||| ||||||| |||||||| |||||||||| |||| |||  | | |||||||| ||||||||||| | |||||||||||  ||||||||||||||    
T  3637977 ttattaatcatgaaattatagagaagaaggtcgtaataatcaacaaaaaagcaaacatagttccactcatgagggagataccggtagagattcatat 3637881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 329
Target Start/End: Original strand, 28884273 - 28884349
Alignment:
Q  253 gaaggtcataatgatcggccagaaagcaaatatagttccacttacgagggagatactcgtagagattcatatagaat 329  Q
    ||||| |||||||||  || |||||||||| ||||||||||| | |||| ||||| |||||||||||||||||||||    
T  28884273 gaaggccataatgattagcaagaaagcaaacatagttccactcatgaggtagatattcgtagagattcatatagaat 28884349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 228 - 335
Target Start/End: Complemental strand, 20302866 - 20302759
Alignment:
Q  228 ttatgaatcatggaattatagggaagaaggtcataatgatcggccagaaagcaaatatagttccacttacgagggagatactcgtagagattcatataga 327  Q
    ||||||||||||||||| ||||||||||| ||||||||||| || |||||||||| ||||  | | | | |||||||||||||  |||||||| |||| |    
T  20302866 ttatgaatcatggaattgtagggaagaagatcataatgatcagcaagaaagcaaacataggactattcatgagggagatactcacagagattcgtataca 20302767  T
Q  328 atgaatat 335  Q
    ||||||||    
T  20302766 atgaatat 20302759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 228 - 335
Target Start/End: Complemental strand, 20327410 - 20327303
Alignment:
Q  228 ttatgaatcatggaattatagggaagaaggtcataatgatcggccagaaagcaaatatagttccacttacgagggagatactcgtagagattcatataga 327  Q
    ||||||||||||||||| ||||||||||| |||| |||||| || |||||||||| ||||  ||| | | |||||||||||||  ||||||||  ||| |    
T  20327410 ttatgaatcatggaattgtagggaagaagatcatcatgatcagcaagaaagcaaacataggaccattcatgagggagatactcacagagattcgcataca 20327311  T
Q  328 atgaatat 335  Q
    ||||||||    
T  20327310 atgaatat 20327303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 56074639 - 56074692
Alignment:
Q  228 ttatgaatcatggaattatagggaagaaggtcataatgatcggccagaaagcaa 281  Q
    |||||||||||||||| |||||||||||||||||||||||| || |||||||||    
T  56074639 ttatgaatcatggaatcatagggaagaaggtcataatgatcagcaagaaagcaa 56074692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 226 - 287
Target Start/End: Complemental strand, 13046603 - 13046542
Alignment:
Q  226 tattatgaatcatggaattatagggaagaaggtcataatgatcggccagaaagcaaatatag 287  Q
    ||||||||||||||| ||||||||||||||| ||||||||||| |  ||||||||| |||||    
T  13046603 tattatgaatcatggtattatagggaagaagatcataatgatcagtaagaaagcaagtatag 13046542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 267
Target Start/End: Complemental strand, 36580783 - 36580741
Alignment:
Q  225 ttattatgaatcatggaattatagggaagaaggtcataatgat 267  Q
    ||||||||||||||| |||||||||||||||| ||||||||||    
T  36580783 ttattatgaatcatgaaattatagggaagaagatcataatgat 36580741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 281
Target Start/End: Complemental strand, 9487579 - 9487523
Alignment:
Q  225 ttattatgaatcatggaattatagggaagaaggtcataatgatcggccagaaagcaa 281  Q
    |||||||||||||| ||||| ||||||||||| ||||| ||||| || |||||||||    
T  9487579 ttattatgaatcatcgaattctagggaagaagatcatagtgatcagcaagaaagcaa 9487523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 25076108 - 25076171
Alignment:
Q  228 ttatgaatcatggaattatagggaagaaggtcataatgatcggccagaaagcaaatatagttcc 291  Q
    |||||||||||||||| ||||||||||| |||||||||||  || |||||||||  ||||||||    
T  25076108 ttatgaatcatggaatcatagggaagaatgtcataatgattagcaagaaagcaagcatagttcc 25076171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 291
Target Start/End: Original strand, 25134077 - 25134140
Alignment:
Q  228 ttatgaatcatggaattatagggaagaaggtcataatgatcggccagaaagcaaatatagttcc 291  Q
    |||||||||||||||| ||||||||||| |||||||||||  || |||||||||  ||||||||    
T  25134077 ttatgaatcatggaatcatagggaagaatgtcataatgattagcaagaaagcaagcatagttcc 25134140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 306
Target Start/End: Complemental strand, 4880469 - 4880395
Alignment:
Q  232 gaatcatggaattatagggaagaaggtcataatgatcggccagaaagcaaatatagttccacttacgagggagat 306  Q
    ||||||||||||||||||||||||||||| |||||||  | | |||||||  ||||||||| | | |||||||||    
T  4880469 gaatcatggaattatagggaagaaggtcaaaatgatcaacaaaaaagcaagcatagttccagtcaagagggagat 4880395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 281
Target Start/End: Original strand, 18612033 - 18612086
Alignment:
Q  228 ttatgaatcatggaattatagggaagaaggtcataatgatcggccagaaagcaa 281  Q
    |||||||||||||||| ||  |||||||||||||||| ||| || |||||||||    
T  18612033 ttatgaatcatggaatcattaggaagaaggtcataatcatcagcaagaaagcaa 18612086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University