View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_14 (Length: 379)

Name: NF10187_low_14
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_14
NF10187_low_14
[»] chr5 (1 HSPs)
chr5 (19-379)||(13472177-13472535)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 379
Target Start/End: Complemental strand, 13472535 - 13472177
Alignment:
Q  19 tctccacctatctcttattgtatgtttccatgtaaacgacgtaaaatccgctgtattgattcatggcggacccaaagcaagtgcaaccaggccaattgtg 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13472535 tctccacctatctcttattgtatgtttccatgtaaacgacgtaaaatccgctgtatcgattcatggcggacccaaagcaagtgcaaccaggccaattgtg 13472436  T
Q  119 gtctcaaaaaatgttggggactcaattatttatttattttgaaatcctaactaactgaacttaatcctagcacatagagagaattaattatccgtagagg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| ||||||||||||||| |||||||||    
T  13472435 gtctcaaaaaatgttggggactcaattatttatttattttgaaatcctaactaactgaacttaatcct--cacaaagagagaattaattacccgtagagg 13472338  T
Q  219 atgtaactaacaaagatataaagattgatgatggaagaccattcaaaagcttgaatccaagcttccaatggctcccaatgagtattgacaaaaaggacga 318  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  13472337 atgtaactaacaaagatataaagattgatgatggaagatcattcaaaagcttgaatccaagcttccaatggctcccaatgagtattgacagaaaggacga 13472238  T
Q  319 gtttgacaaaccgataaacacgagggaccgaaaagaacatatgttttgggagtcatgagac 379  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |||||    
T  13472237 gtttgacaaaccgataaacacgagggaccaaaaaaaacatatgttttgggagtcacgagac 13472177  T

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