View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_16 (Length: 363)
Name: NF10187_low_16
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 107 - 349
Target Start/End: Complemental strand, 971443 - 971201
Alignment:
| Q |
107 |
tctggcgtggttggaattaagcttgatatggaaaaagcatatgatagagtggaatgggatttcctagaaagcactcttctcactatggactttcctatta |
206 |
Q |
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| T |
971443 |
tctggtgtggttggaattaagcttgatatggaaaaagcatatcatagagtggaatgggatttcctagaaagcactcttctcactatgggcttccctatta |
971344 |
T |
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| Q |
207 |
aaattgttaaaactataatgttgtgtgtcagaagtgtatctttttccattcttataaatgaatccccatctactatgtttaaacctaaaagggaaattag |
306 |
Q |
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| T |
971343 |
aaattgttaaaactataatgctgtgtgtcagaagtgtgtctttttccattcttataaatggatccccatctactatgtttaaacctaaaaggggaattag |
971244 |
T |
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| Q |
307 |
acaaggagatcctctgcccccttatcttttcataatctgtgct |
349 |
Q |
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| T |
971243 |
acaaggagatcctctctccccttatcttttcataatttgtgct |
971201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 321
Target Start/End: Complemental strand, 43136452 - 43136247
Alignment:
| Q |
116 |
gttggaattaagcttgatatggaaaaagcatatgatagagtggaatgggatttcctagaaagcactcttctcactatggactttcctattaaaattgtta |
215 |
Q |
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| T |
43136452 |
gttggaattaagcttgatctggaaaaggcatatgacagagtggagtgggattttttagaatcaactctcttcaccatgggttttcctattaatcttgtca |
43136353 |
T |
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| Q |
216 |
aaactataatgttgtgtgtcagaagtgtatctttttccattcttataaatgaatccccatctactatgtttaaacctaaaagggaaattagacaaggaga |
315 |
Q |
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| T |
43136352 |
atactatcgtgctttgtgtcagaagtgtctctttttctattctaattaatggatctcattctactacttttaaacctaagagaggaattagacaaggaga |
43136253 |
T |
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| Q |
316 |
tcctct |
321 |
Q |
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| T |
43136252 |
ccctct |
43136247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 90
Target Start/End: Complemental strand, 971540 - 971468
Alignment:
| Q |
18 |
acaacaaagtacatttttaccaaacaagcttatttctgataacaccattatagcttatgaagcctttcatttt |
90 |
Q |
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| T |
971540 |
acaacagagtgcatttttaccaaacatgcttatttctgataacaccattctagcttatgaagtctttcatttt |
971468 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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