View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_17 (Length: 362)

Name: NF10187_low_17
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_17
NF10187_low_17
[»] chr2 (8 HSPs)
chr2 (16-362)||(35279670-35280016)
chr2 (288-362)||(35289287-35289361)
chr2 (254-353)||(35307058-35307153)
chr2 (88-185)||(35289076-35289173)
chr2 (254-353)||(35322059-35322154)
chr2 (295-349)||(35311438-35311492)
chr2 (186-277)||(35275027-35275118)
chr2 (295-362)||(35275182-35275249)


Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 16 - 362
Target Start/End: Original strand, 35279670 - 35280016
Alignment:
Q  16 gtaggtccttatataggtatgaagaaattctaatcttgattataacacttatgatttttgtgtgagcagtaaacaattgagaaagaagaataaacaatgc 115  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||    
T  35279670 gtaggtccttaaataggtatgaagaaattctaatcttgattataacacttatgatttttgtttgagcagtacacaattgagaaagaagaaaaaacaatgc 35279769  T
Q  116 aacatttgattaatccaacataaaactaacattatccattcattgatttatgtaagacaaacaatatataaagatctagtcagcatttatgactttgacc 215  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  35279770 aacatttgattaatccaacataaaactagcattatccattcattgatttatgtaagacaaacaatatataaagatctagtcagcctttatgactttgacc 35279869  T
Q  216 ctctacttaatcaattatccaaaatctccaacacaatatttattcaattgctaatatgcccttcaattcatgatcaattaattcacaagtctgcaattct 315  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  35279870 ctctacttaatcaattatccaaattctccaacacaatatttattcaattgctaatatgccctccaattcatgatcaattaattcacaagtctgcaattct 35279969  T
Q  316 ttctaatttccccattagtccctgtgagaggactaattctgctcatc 362  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  35279970 ttctaatttccccattagtccctgtgagaggactaattctgctcatc 35280016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 288 - 362
Target Start/End: Original strand, 35289287 - 35289361
Alignment:
Q  288 atcaattaattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaattctgctcatc 362  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||||| || |||||||||||||| ||||||    
T  35289287 atcaattagttcacaagcctgcaattctttctaatctccccattagtcccagttagaggactaattctactcatc 35289361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 254 - 353
Target Start/End: Original strand, 35307058 - 35307153
Alignment:
Q  254 tttattcaattgctaatatgcccttcaattcatgatcaattaattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaatt 353  Q
    |||||| ||||||| ||| ||||| ||||||| ||||||||    |||||| ||||||||||||||||| |||||||||||||| || ||||||||||||    
T  35307058 tttatttaattgcttataagccctccaattcaagatcaatt----cacaagcctgcaattctttctaatctccccattagtcccagttagaggactaatt 35307153  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 88 - 185
Target Start/End: Original strand, 35289076 - 35289173
Alignment:
Q  88 acaattgagaaagaagaataaacaatgcaacatttgattaatccaacataaaactaacattatccattcattgatttatgtaagacaaacaatatata 185  Q
    |||||||||||| ||||| |||||||||||||     | ||||||||| ||||||| |||| |||||||||||||||| ||||||||||||| |||||    
T  35289076 acaattgagaaataagaaaaaacaatgcaacaacatttgaatccaacacaaaactagcattttccattcattgatttaagtaagacaaacaacatata 35289173  T

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Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 353
Target Start/End: Original strand, 35322059 - 35322154
Alignment:
Q  254 tttattcaattgctaatatgcccttcaattcatgatcaattaattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaatt 353  Q
    |||||||||||||| ||| ||||| ||||||| ||||||||    |||||| || |||||||||||||| |||||||||||||| || |||||| |||||    
T  35322059 tttattcaattgcttataagccctccaattcaagatcaatt----cacaagcctacaattctttctaatctccccattagtcccagttagaggattaatt 35322154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 295 - 349
Target Start/End: Original strand, 35311438 - 35311492
Alignment:
Q  295 aattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggact 349  Q
    |||||||||| || ||||||||||| || |||||||||||||| |||||||||||    
T  35311438 aattcacaagcctacaattctttctgatctccccattagtcccagtgagaggact 35311492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 277
Target Start/End: Original strand, 35275027 - 35275118
Alignment:
Q  186 aagatctagtcagcatttatgactttgaccctctacttaatcaat-tatccaaaatctccaacacaatatttattcaattgctaatatgccct 277  Q
    |||||||||||| | |||||||| | |||||| || |||| |||| | || |||||||||| ||||||||||||| ||||||| |||||||||    
T  35275027 aagatctagtcaacctttatgacctagaccctgtaattaaacaatctctcaaaaatctcca-cacaatatttattaaattgctgatatgccct 35275118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 295 - 362
Target Start/End: Original strand, 35275182 - 35275249
Alignment:
Q  295 aattcacaagtctgcaattctttctaatttccccattagtccctgtgagaggactaattctgctcatc 362  Q
    |||||||||  |||||||||||||| || || ||||||||||| || |||||||||||| | ||||||    
T  35275182 aattcacaatcctgcaattctttctgatctcaccattagtcccagtaagaggactaattttactcatc 35275249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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