View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_18 (Length: 357)

Name: NF10187_low_18
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_18
NF10187_low_18
[»] chr8 (3 HSPs)
chr8 (180-341)||(8018278-8018439)
chr8 (38-103)||(8018134-8018199)
chr8 (236-341)||(17654769-17654874)
[»] chr5 (3 HSPs)
chr5 (182-341)||(11106865-11107025)
chr5 (267-307)||(24874219-24874259)
chr5 (266-341)||(30987200-30987275)
[»] chr7 (2 HSPs)
chr7 (173-339)||(30269634-30269801)
chr7 (267-333)||(9082952-9083018)
[»] chr3 (2 HSPs)
chr3 (173-341)||(41430387-41430556)
chr3 (36-92)||(175182-175238)
[»] chr6 (1 HSPs)
chr6 (173-324)||(12734609-12734761)
[»] chr1 (3 HSPs)
chr1 (266-334)||(44269762-44269830)
chr1 (267-341)||(28521561-28521635)
chr1 (174-224)||(31525115-31525165)
[»] chr2 (1 HSPs)
chr2 (267-322)||(43706541-43706596)
[»] chr4 (1 HSPs)
chr4 (267-339)||(50822823-50822895)


Alignment Details
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 180 - 341
Target Start/End: Original strand, 8018278 - 8018439
Alignment:
Q  180 tgcatcactccgaagaaaattcaaaagatctgtcggaggagactcatnnnnnnnnnctcaaagtttgatgatgcactaagcttggacaaaaaatccgcac 279  Q
    |||||||||||||||||||||||||||||||||||||||||||||||         |||||| ||||||||| ||| || ||| ||||||||||||||||    
T  8018278 tgcatcactccgaagaaaattcaaaagatctgtcggaggagactcataaaaagaaactcaaaatttgatgatacaccaaacttagacaaaaaatccgcac 8018377  T
Q  280 attgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagctctttt 341  Q
    ||| ||| |||||| |||| ||||||||||| ||||||||||||||||||||||||||||||    
T  8018378 attaatttccttcccaaagagtgtgattcattgtaacatttccttactccaatagctctttt 8018439  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 8018134 - 8018199
Alignment:
Q  38 tgttttcagtgacattatggtgagtattttcgttctctttgttcatatttttgtggagtcaagatt 103  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||    
T  8018134 tgttttcagtgacattatggtgagtattttcattctctttgttcttattcttgtggagtcaagatt 8018199  T

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Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 236 - 341
Target Start/End: Original strand, 17654769 - 17654874
Alignment:
Q  236 ctcaaagtttgatgatgcactaagcttggacaaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagc 335  Q
    ||||||||||||||| |||| |||||||  |||||||| ||||| |||||||| ||||    |||| |||||||| |||| |||||||| |||||| |||    
T  17654769 ctcaaagtttgatgaggcaccaagcttgaccaaaaaattcgcacgttgattcctttcccttggggtatgattcatggtaatatttccttgctccaaaagc 17654868  T
Q  336 tctttt 341  Q
    ||||||    
T  17654869 tctttt 17654874  T

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Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 182 - 341
Target Start/End: Complemental strand, 11107025 - 11106865
Alignment:
Q  182 catcactccgaagaaaattcaaaagatctgtcggaggagactcatnnnnnnnnn-ctcaaagtttgatgatgcactaagcttggacaaaaaatccgcaca 280  Q
    ||||||||||||||| |||||||||||| || ||||||||||| |          |||| |||||||||| |||| |||||||| |||||| ||||||||    
T  11107025 catcactccgaagaagattcaaaagatccgttggaggagactcgtaacaaagaaactcagagtttgatgaggcaccaagcttggccaaaaagtccgcaca 11106926  T
Q  281 ttgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagctctttt 341  Q
    |||||| |||| |   |||||||||||||||||||||||||||| |||||||| |||||||    
T  11106925 ttgatttcctttccggagggtgtgattcatcgtaacatttccttgctccaataactctttt 11106865  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 267 - 307
Target Start/End: Complemental strand, 24874259 - 24874219
Alignment:
Q  267 aaaaaatccgcacattgattcccttcctaaagggtgtgatt 307  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  24874259 aaaaaatccgcacattgattcccttccctaagggtgtgatt 24874219  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 30987275 - 30987200
Alignment:
Q  266 caaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagctctttt 341  Q
    ||||||||| |||||||||||  |||    |||||||||||||||| || ||||| ||| ||||||||||||||||    
T  30987275 caaaaaatctgcacattgattttcttttggaagggtgtgattcatcatagcattttcttgctccaatagctctttt 30987200  T

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Target: chr7 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 173 - 339
Target Start/End: Original strand, 30269634 - 30269801
Alignment:
Q  173 ttccagttgcatcactccgaagaaaattcaaaagatctgtcggaggagactcatnnnnnnnnn-ctcaaagtttgatgatgcactaagcttggacaaaaa 271  Q
    |||||| |||||||||||||||||| || ||||||| ||| ||||||||||| |          |||||||||||||||  ||| |||||||| ||||||    
T  30269634 ttccagctgcatcactccgaagaaagttgaaaagatttgttggaggagactcgtgacaaagaaactcaaagtttgatgagacaccaagcttggtcaaaaa 30269733  T
Q  272 atccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagctctt 339  Q
     || ||| |||||||| |||||  ||||||||||||||||||||||||||||| |||  |||||||||    
T  30269734 gtcggcatattgattctcttcccgaagggtgtgattcatcgtaacatttccttgctcatatagctctt 30269801  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 333
Target Start/End: Original strand, 9082952 - 9083018
Alignment:
Q  267 aaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaata 333  Q
    |||||||| |||||||||||| |||||  |||||||||||| | | |||||||||| | ||||||||    
T  9082952 aaaaaatctgcacattgattctcttccctaagggtgtgattaaccataacatttccctgctccaata 9083018  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 173 - 341
Target Start/End: Original strand, 41430387 - 41430556
Alignment:
Q  173 ttccagttgcatcactccgaagaaaattcaaaagatctgtcggaggagactcatnnnnnnnnn-ctcaaagtttgatgatgcactaagcttggacaaaaa 271  Q
    |||||| |||||||||||||||||||||||||||||| | |  ||||||||| |          ||||||||||||||| |||  ||  |||| ||||||    
T  41430387 ttccagctgcatcactccgaagaaaattcaaaagatccgccaaaggagactcgtgacaaagaaactcaaagtttgatgaggcagcaaatttggccaaaaa 41430486  T
Q  272 atccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagctctttt 341  Q
    |||||||||||||||||||||    ||| |||||||||||||||||||| ||| |||||||| |||||||    
T  41430487 atccgcacattgattcccttctcggaggatgtgattcatcgtaacattttcttcctccaataactctttt 41430556  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 36 - 92
Target Start/End: Complemental strand, 175238 - 175182
Alignment:
Q  36 agtgttttcagtgacattatggtgagtattttcgttctctttgttcatatttttgtg 92  Q
    ||||||||||||||||  ||||||||||||||| |||  ||| |||||||| |||||    
T  175238 agtgttttcagtgacaggatggtgagtattttcattccattttttcatattcttgtg 175182  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 173 - 324
Target Start/End: Complemental strand, 12734761 - 12734609
Alignment:
Q  173 ttccagttgcatcactccgaagaaaattcaaaagatctgtcggaggagactcatnnnnnnnnn-ctcaaagtttgatgatgcactaagcttggacaaaaa 271  Q
    |||||| ||||||||||||||||| |||||||||||| || ||||||||||| |          ||||||||||||||| |||| ||| |||| || |||    
T  12734761 ttccagctgcatcactccgaagaagattcaaaagatccgttggaggagactcgtgataaagaaactcaaagtttgatgaggcaccaagtttggccataaa 12734662  T
Q  272 atccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttcctt 324  Q
     || ||||||||||||||||||   || |||||||||||||||||||||||||    
T  12734661 gtctgcacattgattcccttcccggagtgtgtgattcatcgtaacatttcctt 12734609  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 334
Target Start/End: Original strand, 44269762 - 44269830
Alignment:
Q  266 caaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatag 334  Q
    |||||||||||||||||||||||||||    ||||||||||| ||||||||||||| ||||||||||||    
T  44269762 caaaaaatccgcacattgattcccttctcggagggtgtgattgatcgtaacatttctttactccaatag 44269830  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 341
Target Start/End: Complemental strand, 28521635 - 28521561
Alignment:
Q  267 aaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagctctttt 341  Q
    ||||||| |||||||||||| |||| || |||| || |||| | | |||||||||| |||||||||| |||||||    
T  28521635 aaaaaattcgcacattgatttcctttctcaaggatgagattaaccataacatttccctactccaataactctttt 28521561  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 31525165 - 31525115
Alignment:
Q  174 tccagttgcatcactccgaagaaaattcaaaagatctgtcggaggagactc 224  Q
    ||||| ||||||||| ||||||| |||||||||||| || |||||||||||    
T  31525165 tccagctgcatcactgcgaagaagattcaaaagatccgttggaggagactc 31525115  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 267 - 322
Target Start/End: Original strand, 43706541 - 43706596
Alignment:
Q  267 aaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttcc 322  Q
    ||||||||||||||||||||||| |||  |||||||||||| | | ||||||||||    
T  43706541 aaaaaatccgcacattgattcccatccctaagggtgtgattgaccataacatttcc 43706596  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 267 - 339
Target Start/End: Original strand, 50822823 - 50822895
Alignment:
Q  267 aaaaaatccgcacattgattcccttcctaaagggtgtgattcatcgtaacatttccttactccaatagctctt 339  Q
    |||||||| ||||||||||||| ||||  |||||||||||| | | ||||| |||| |||| ||||| |||||    
T  50822823 aaaaaatctgcacattgattcctttccctaagggtgtgattaaccataacaattccctacttcaataactctt 50822895  T

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