View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_2 (Length: 623)
Name: NF10187_low_2
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 13 - 615
Target Start/End: Original strand, 3093763 - 3094365
Alignment:
| Q |
13 |
atggacatcagattgtcaacattgtcacgaatgtgagatcccatagtccgccttcatatatttctaagtataaatattgatgttatttttaatttgctca |
112 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3093763 |
atggtcatcagattgtcaacattgtcacgaatgtgagatcccatagtccgccttcatatatttctaagtataaatattgatgttatttttaatttgctca |
3093862 |
T |
|
| Q |
113 |
caaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaaggaccccagaagccatagcaaaagcaatagagaggatggagagcctgg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3093863 |
caaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaaggaccccagaagccatagcaaaagcaatagagaggatggagagcctgg |
3093962 |
T |
|
| Q |
213 |
accaagaagcattcaggggtggattcattctagaaaaaatcttggggccaatttcaacgggtcatttggagctccgaaacaccgatccaaatgagaaccc |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3093963 |
accaagaagcattcaggggtggattcattctagaaaaaatcttggggccaatttcaacgggtcatttggagctccgaaacaccgatccaaatgagaaccc |
3094062 |
T |
|
| Q |
313 |
tttggtaacatttaactacttccaagacccaagagacttagaaagatgcatacaaggcatgaacacaattgagaaaataatagattcaaaggcattttct |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094063 |
tttggtaacatttaactacttccaagacccaagagacttagaaagatgcatacaaggcatgaacacaattgagaaaataatagattcaaaggcattttct |
3094162 |
T |
|
| Q |
413 |
ccatttaaatacacaaacatgtcagtttctatgctacttaacatgacagcaaattcaccagtaaatttattgcctaaacacacaaatacttcaatgtctt |
512 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3094163 |
ccatttaaatacacaaacatgtcagtttctatgctacttaacatgacagcaaattcaccagtaaatttattgcctaaacacacaaatacttcaatgtctt |
3094262 |
T |
|
| Q |
513 |
tggaacaattttgtagagacactgtgatgactatatggcattatcatggtggttgtcaagttggtagggttgttgatagtgattataaggttgctgatgt |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3094263 |
tggaacaattttgtagagacactgtgatgactatatggcattatcatggtggttgtcaagttggtagggttgttgatagtgattataaggttgctggtgt |
3094362 |
T |
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| Q |
613 |
cca |
615 |
Q |
| |
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||| |
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| T |
3094363 |
cca |
3094365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 95 - 604
Target Start/End: Original strand, 3084999 - 3085508
Alignment:
| Q |
95 |
ttatttttaatttgctcacaaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaaggaccccagaagccatagcaaaagcaatag |
194 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||||||||||||||| |
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| T |
3084999 |
ttatttttaatttactcacaaatattacaaatgcagattggtcaattctcaaagttgccaccaaagcaaatgattctacaagccatagcaaaagcaatag |
3085098 |
T |
|
| Q |
195 |
agaggatggagagcctggaccaagaagcattcaggggtggattcattctagaaaaaatcttggggccaatttcaacgggtcatttggagctccgaaacac |
294 |
Q |
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|||||| || ||||| ||||||||||| || ||||||||||||||||| || ||| | | || ||||||||||| ||||||||||||||||||||||| |
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| T |
3085099 |
ggaggatagaaagcctagaccaagaagctttaaggggtggattcattctggagaaagtaataggtccaatttcaacaggtcatttggagctccgaaacac |
3085198 |
T |
|
| Q |
295 |
cgatccaaatgagaaccctttggtaacatttaactacttccaagacccaagagacttagaaagatgcatacaaggcatgaacacaattgagaaaataata |
394 |
Q |
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||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||| |
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| T |
3085199 |
tgatccaaatgataaccctttggtaacatttaactacttccaggacccaagagacttggaacgatgcatacaaggcatgggcacaattgagaaaataata |
3085298 |
T |
|
| Q |
395 |
gattcaaaggcattttctccatttaaatacacaaacatgtcagtttctatgctacttaacatgacagcaaattcaccagtaaatttattgcctaaacaca |
494 |
Q |
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|||||||| || ||| ||||||||| ||||| ||||| ||| |||||||| |||||||||||| |||||| ||| |||||||||||||||||| |||| |
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| T |
3085299 |
gattcaaatgcttttgctccatttagatacaataacatatcattttctatgttacttaacatgattgcaaatgcacaagtaaatttattgcctaagcaca |
3085398 |
T |
|
| Q |
495 |
caaatacttcaatgtctttggaacaattttgtagagacactgtgatgactatatggcattatcatggtggttgtcaagttggtagggttgttgatagtga |
594 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
3085399 |
caaatacttcaatgtctttggaacaattttgtagagacactgtgatgacaatatggcattatcatggtggttgtcaagttggtagggttgttgataatga |
3085498 |
T |
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| Q |
595 |
ttataaggtt |
604 |
Q |
| |
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|||||||||| |
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| T |
3085499 |
ttataaggtt |
3085508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 515 - 564
Target Start/End: Complemental strand, 42960094 - 42960045
Alignment:
| Q |
515 |
gaacaattttgtagagacactgtgatgactatatggcattatcatggtgg |
564 |
Q |
| |
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||||| |||||||||||||||||||| ||||| ||||| ||||||||||| |
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| T |
42960094 |
gaacagttttgtagagacactgtgatcactatttggcactatcatggtgg |
42960045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 542 - 586
Target Start/End: Original strand, 404890 - 404934
Alignment:
| Q |
542 |
actatatggcattatcatggtggttgtcaagttggtagggttgtt |
586 |
Q |
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||||||||||||||||||||||| ||| ||||||||||||||| |
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| T |
404890 |
actatatggcattatcatggtggatgtgttgttggtagggttgtt |
404934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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