View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_22 (Length: 346)
Name: NF10187_low_22
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_22 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 336
Target Start/End: Original strand, 8740185 - 8740504
Alignment:
| Q |
18 |
gtatggacatccctcatgacttgcggaatggagattttgaggagactatgaatctgcttacgtgcatt---gatcaagaaggtactatggccatcgaatt |
114 |
Q |
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| T |
8740185 |
gtatggacatccctcatgacttgcggaatggagattttgaggagactatgaatctgcttacgtgcattatggatcaagaaggtactatggccatcgaatt |
8740284 |
T |
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| Q |
115 |
cagttttgtggttttgcttaatgcttgtgcgggtatagcagcacttagacatggtgatctattgcaggcccgggttgagaagttagtttttaagaatcgt |
214 |
Q |
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| T |
8740285 |
cagttttgtggttttgcttaatgcttgtgcaggtatagcagcacttagacatggtgatctattgcaggcccgggttgagaagttaggttttaagaatcgt |
8740384 |
T |
|
| Q |
215 |
gttattgtcgggaatggtttgataaatatgtattccaagagcggcatcgttgattcttcatgtaatatgttctttgatatgatgtatggagatattatga |
314 |
Q |
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| T |
8740385 |
gttattgtcgggaatggtttgataaatatgtattcca--agcggcatcattgattcttcatgtaatatgttctttgatatgatgtatggagatattatga |
8740482 |
T |
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| Q |
315 |
cttgaaccaggattagaacaca |
336 |
Q |
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| T |
8740483 |
cttgaaccaggattagaacaca |
8740504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 336
Target Start/End: Complemental strand, 10480660 - 10480341
Alignment:
| Q |
18 |
gtatggacatccctcatgacttgcggaatggagattttgaggagactatgaatctgcttacgtgcatt---gatcaagaaggtactatggccatcgaatt |
114 |
Q |
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| T |
10480660 |
gtatggacatccctcatgacttgcggaatggagattttgaggagactatgaatctgcttacgtgcattatggatcaagaaggtactatggccatcgaatt |
10480561 |
T |
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| Q |
115 |
cagttttgtggttttgcttaatgcttgtgcgggtatagcagcacttagacatggtgatctattgcaggcccgggttgagaagttagtttttaagaatcgt |
214 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
10480560 |
cagttttgtggttttgcttaatgcttgtgcaggtatagcagcacttagacatggtgatctattgcaggcccgggttgagaagttaggttttaagaatcgt |
10480461 |
T |
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| Q |
215 |
gttattgtcgggaatggtttgataaatatgtattccaagagcggcatcgttgattcttcatgtaatatgttctttgatatgatgtatggagatattatga |
314 |
Q |
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| T |
10480460 |
gttattgtcgggaatggtttgataaatatgtattcca--agcggcatcattgattcttcatgtaatatgttctttgatatgatgtatggagatattatga |
10480363 |
T |
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| Q |
315 |
cttgaaccaggattagaacaca |
336 |
Q |
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| T |
10480362 |
cttgaaccaggattagaacaca |
10480341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 36 - 296
Target Start/End: Complemental strand, 2860153 - 2859893
Alignment:
| Q |
36 |
acttgcggaatggagattttgaggagactatgaatctgcttacgtgcattgatcaagaaggtactatggccatcgaattcagttttgtggttttgcttaa |
135 |
Q |
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|||||| ||||||||| |||||||||||| ||||||||||| |||| || |||| ||||||||||||| ||| ||| |||| ||||| |||||||||||| |
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| T |
2860153 |
acttgcagaatggagaatttgaggagactttgaatctgctttcgtgtatggatcgagaaggtactatgtccaacgagttcacttttgcggttttgcttaa |
2860054 |
T |
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| Q |
136 |
tgcttgtgcgggtatagcagcacttagacatggtgatctattgcaggcccgggttgagaagttagtttttaagaatcgtgttattgtcgggaatggtttg |
235 |
Q |
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||||| ||| ||||| || ||||| |||||||| ||||||||||| || || ||||||||||||| | ||||||||||||||||||||||||||| |||| |
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| T |
2860053 |
tgcttttgcaggtatggcggcactcagacatggcgatctattgcatgctcgagttgagaagttaggtattaagaatcgtgttattgtcgggaatgctttg |
2859954 |
T |
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| Q |
236 |
ataaatatgtattccaagagcggcatcgttgattcttcatgtaatatgttctttgatatga |
296 |
Q |
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|||||||||||||||||| | ||| | |||||||||||| | || ||||||||||||||| |
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| T |
2859953 |
ataaatatgtattccaagtgtggctgcattgattcttcatatgatgtgttctttgatatga |
2859893 |
T |
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