View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_24 (Length: 341)
Name: NF10187_low_24
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 331
Target Start/End: Original strand, 35280043 - 35280373
Alignment:
| Q |
1 |
tctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaatgaagaagtcctttatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35280043 |
tctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaattaagaagtcctttatta |
35280142 |
T |
|
| Q |
101 |
gcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgctt |
200 |
Q |
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||||| || |||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
35280143 |
gcaactagatccctataataattgttgtcaaaagtaacaggagagacagaatcaagaggagccaaatttgtgtcaccgccagaaagaggacagtttgctt |
35280242 |
T |
|
| Q |
201 |
ttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaag |
300 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35280243 |
ttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaag |
35280342 |
T |
|
| Q |
301 |
gactgtaaggtctcttaatgttagacctttg |
331 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
35280343 |
gactgtaaggtctcttaatgttagacctttg |
35280373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 3 - 336
Target Start/End: Original strand, 35289390 - 35289723
Alignment:
| Q |
3 |
taaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaatgaagaagtcctttattagc |
102 |
Q |
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||||||||| | |||| ||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
35289390 |
taaaagcaatattatttctactataagtcctaaccaaagaaacttgagaaccaacaccattgaaaagagcttgatcagaatgaagaagtcctttattagc |
35289489 |
T |
|
| Q |
103 |
aacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgctttt |
202 |
Q |
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||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| |||| |
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| T |
35289490 |
aacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggtgccaaatttatgtcaccaccagaagtaggacaatttgatttt |
35289589 |
T |
|
| Q |
203 |
cttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaagga |
302 |
Q |
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||||||||||||||||||||||| ||||| ||||| |||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
35289590 |
cttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctgaaaaattgacattctgcttgacctatggtgtgtgcaccagaaagga |
35289689 |
T |
|
| Q |
303 |
ctgtaaggtctcttaatgttagacctttgcttct |
336 |
Q |
| |
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| T |
35289690 |
cagtaaggtcatttaatgttagacctttgtttct |
35289723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 31 - 331
Target Start/End: Original strand, 35275306 - 35275606
Alignment:
| Q |
31 |
cctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtca |
130 |
Q |
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|||||||||||||| | |||||||| ||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||| |||| ||||| |||||| |
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| T |
35275306 |
cctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtca |
35275405 |
T |
|
| Q |
131 |
aaagtaactggagagacagaatcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgt |
230 |
Q |
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| T |
35275406 |
aatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgt |
35275505 |
T |
|
| Q |
231 |
ttgtttcattgtatatgcgatttcggaaaaattgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtctcttaatgttagaccttt |
330 |
Q |
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| | |||||||| ||||||||||| |||||||||||| || | ||| |||||||||||||||||||| |||||||||||||| |||||||||||| ||| |
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| T |
35275506 |
tggcttcattgtgtatgcgatttctgaaaaattgacactcagtttgccctatggtgtgtgcaccagataggactgtaaggtcatttaatgttagactttt |
35275605 |
T |
|
| Q |
331 |
g |
331 |
Q |
| |
|
| |
|
|
| T |
35275606 |
g |
35275606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 61 - 312
Target Start/End: Original strand, 35307246 - 35307497
Alignment:
| Q |
61 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
160 |
Q |
| |
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||||||||| |||||||||||||| | ||| ||||| | |||||||||| |||||||||| || |||||| | ||||| || || |||||| ||| |
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| T |
35307246 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtggt |
35307345 |
T |
|
| Q |
161 |
gccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaa |
260 |
Q |
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|| ||||| ||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |
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| T |
35307346 |
gctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
35307445 |
T |
|
| Q |
261 |
attgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtc |
312 |
Q |
| |
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|||| || ||| |||||||||||||||||||||||||||| ||||| ||||| |
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| T |
35307446 |
attggcactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtc |
35307497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 61 - 312
Target Start/End: Original strand, 35322247 - 35322498
Alignment:
| Q |
61 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
160 |
Q |
| |
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||||||||| |||||||||||||| | ||| ||||| | |||||||| | |||||||||| ||||||||| | ||||| || || ||||||||| |
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| T |
35322247 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaagatttttatagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggt |
35322346 |
T |
|
| Q |
161 |
gccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaa |
260 |
Q |
| |
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|| ||||| ||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||| |
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| T |
35322347 |
gctaaattggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
35322446 |
T |
|
| Q |
261 |
attgacattctgcttggcctatggtgtgtgcaccagaaaggactgtaaggtc |
312 |
Q |
| |
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|||| || ||| |||||||||||||||||||||||||||| ||||| ||||| |
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| T |
35322447 |
attggcactctccttggcctatggtgtgtgcaccagaaagtactgtgaggtc |
35322498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 61 - 306
Target Start/End: Original strand, 35311589 - 35311837
Alignment:
| Q |
61 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
160 |
Q |
| |
|
||||||||| ||||||||||||| | || ||||| | |||||||||| |||| ||||| ||||||||| | ||||| || || |||||| ||| |
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| T |
35311589 |
attgaaaaggacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggt |
35311688 |
T |
|
| Q |
161 |
gccaaatttgtgtcac---caccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcgga |
257 |
Q |
| |
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|| ||||| |||||| ||| ||||| || |||||| | ||||||||||||||| ||||||||||| ||||| |||||||||||||||||| ||| || |
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| T |
35311689 |
gctaaattggtgtcattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctga |
35311788 |
T |
|
| Q |
258 |
aaaattgacattctgcttggcctatggtgtgtgcaccagaaaggactgt |
306 |
Q |
| |
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| ||| |||| ||| |||||||||||||||||||||||||||| ||||| |
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| T |
35311789 |
acaatcgacactctccttggcctatggtgtgtgcaccagaaagtactgt |
35311837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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