View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_26 (Length: 334)

Name: NF10187_low_26
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_26
NF10187_low_26
[»] chr8 (1 HSPs)
chr8 (22-316)||(34445143-34445436)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 22 - 316
Target Start/End: Original strand, 34445143 - 34445436
Alignment:
Q  22 aaatggcagattatacaacatagtatgacataataattgatagatgctcctaataaagttatttaagtatgtttgtttatctaaggcttnnnnnnnnntc 121  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||    
T  34445143 aaatggcagattatacaacatagtatggcataataattgatagatgctcctaataaagttatttaagtatgtttgtttatctaaggcttaaataaaa-tc 34445241  T
Q  122 aatatattttttgaattcaagttatcaaagctctatcaaataagtggatttggttgaatttttactataggtgaaagctgaaagaatgaaagctatggca 221  Q
    ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34445242 aatatattttttgaagtcaagttatcaaagctctatcaaataaatggatttggttgaatttttactataggtgaaagctgaaagaatgaaagctatggca 34445341  T
Q  222 caagaaaagttaacaaataaactggctgctacaagaagaatagctgaagagaagagggctaatgcacaagtgaagctgaatgataatgctttgag 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34445342 caagaaaagttaacaaataaactggctgctacaagaagaatagctgaagagaagagggctaatgcacaagtgaagctgaatgataatgctttgag 34445436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University