View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_3 (Length: 460)

Name: NF10187_low_3
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_3
NF10187_low_3
[»] chr4 (6 HSPs)
chr4 (14-449)||(27972633-27973057)
chr4 (345-433)||(38584085-38584173)
chr4 (352-426)||(37235943-37236017)
chr4 (345-425)||(38843710-38843790)
chr4 (351-427)||(41303621-41303697)
chr4 (352-426)||(52208007-52208081)
[»] chr8 (4 HSPs)
chr8 (351-426)||(9528907-9528982)
chr8 (353-426)||(35911187-35911260)
chr8 (352-425)||(35916268-35916341)
chr8 (353-426)||(20112825-20112898)
[»] chr7 (2 HSPs)
chr7 (351-426)||(48926625-48926700)
chr7 (351-425)||(6055065-6055139)
[»] chr5 (3 HSPs)
chr5 (351-434)||(30364369-30364452)
chr5 (351-425)||(4308723-4308797)
chr5 (351-425)||(4312554-4312628)
[»] chr3 (1 HSPs)
chr3 (351-426)||(26286775-26286850)
[»] chr1 (1 HSPs)
chr1 (351-438)||(42321475-42321562)


Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 14 - 449
Target Start/End: Complemental strand, 27973057 - 27972633
Alignment:
Q  14 cttcctttgctgttgttcaataataataggatcttggaataagaattgattccaaggtaagatttattctccatcttaatcattattgcagttcccacgt 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||    
T  27973057 cttcctttgctgttgttcaataataataggatcttggaataagaattgatgccaaggtaagatttattctccatcttaatcattattgcagtccccacgt 27972958  T
Q  114 gggaatgggatgggaatgcaagcaaaagaaaataaaactcactgctagaggttgggg------caataaaatttgagatttcaactcttaattattgtac 207  Q
    ||                    |||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||||||||||||||    
T  27972957 gg--------------------caaaagaaaataaaactcactgctagaggttgggggcggggcaataaaatttgagatttcaactcttaattattgtac 27972878  T
Q  208 agatgttaactatgaactgaagtatacattttcaatcagggaggacaaaattatcgtggaaaatggaagtgtctttcaaatgtgcataaaacnnnnnnn- 306  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||            
T  27972877 agatgttaactatgaactgaagtatacattttcaatcagggaggacaaaattatcgtgcaaaatgaaagtgtctttcaaatgtgcataaaacaaaaaaaa 27972778  T
Q  307 -ttgaaagctttgtaatatatct-atttagtgtaattcagaacatgaatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgg 404  Q
     | |||||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27972777 atagaaagctttgtaatatattttatttagtgtaattcacaacatgaatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgg 27972678  T
Q  405 gttcaagtcccggcaacggaatccttttttgttagaaattccttt 449  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  27972677 gttcaagtcccggcaacggaatccttttttgttagaaattccttt 27972633  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 345 - 433
Target Start/End: Complemental strand, 38584173 - 38584085
Alignment:
Q  345 aacatgaatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaatccttttt 433  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  38584173 aacatcaatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaattcttttt 38584085  T

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Target: chr4; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 352 - 426
Target Start/End: Original strand, 37235943 - 37236017
Alignment:
Q  352 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaat 426  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37235943 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaat 37236017  T

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Target: chr4; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 345 - 425
Target Start/End: Complemental strand, 38843790 - 38843710
Alignment:
Q  345 aacatgaatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 425  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  38843790 aacatgaatccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 38843710  T

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Target: chr4; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 351 - 427
Target Start/End: Complemental strand, 41303697 - 41303621
Alignment:
Q  351 aatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaatc 427  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  41303697 aatccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaatc 41303621  T

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Target: chr4; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 352 - 426
Target Start/End: Original strand, 52208007 - 52208081
Alignment:
Q  352 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaat 426  Q
    |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  52208007 atccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaat 52208081  T

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Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 351 - 426
Target Start/End: Complemental strand, 9528982 - 9528907
Alignment:
Q  351 aatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaat 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9528982 aatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaat 9528907  T

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Target: chr8; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 353 - 426
Target Start/End: Original strand, 35911187 - 35911260
Alignment:
Q  353 tccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaat 426  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35911187 tccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaat 35911260  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 352 - 425
Target Start/End: Original strand, 35916268 - 35916341
Alignment:
Q  352 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 425  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35916268 atccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 35916341  T

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Target: chr8; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 353 - 426
Target Start/End: Original strand, 20112825 - 20112898
Alignment:
Q  353 tccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaat 426  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  20112825 tccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaat 20112898  T

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Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 351 - 426
Target Start/End: Original strand, 48926625 - 48926700
Alignment:
Q  351 aatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaat 426  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48926625 aatccgttgtagtctagttggttaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaat 48926700  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 351 - 425
Target Start/End: Original strand, 6055065 - 6055139
Alignment:
Q  351 aatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 425  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  6055065 aatccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 6055139  T

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Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 351 - 434
Target Start/End: Original strand, 30364369 - 30364452
Alignment:
Q  351 aatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaatcctttttt 434  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  30364369 aatccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaatcttttttt 30364452  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 351 - 425
Target Start/End: Original strand, 4308723 - 4308797
Alignment:
Q  351 aatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 425  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  4308723 aatccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 4308797  T

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Target: chr5; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 351 - 425
Target Start/End: Original strand, 4312554 - 4312628
Alignment:
Q  351 aatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaa 425  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||    
T  4312554 aatccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaa 4312628  T

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Target: chr3 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 351 - 426
Target Start/End: Original strand, 26286775 - 26286850
Alignment:
Q  351 aatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaat 426  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  26286775 aatccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaat 26286850  T

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Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 351 - 438
Target Start/End: Original strand, 42321475 - 42321562
Alignment:
Q  351 aatccgttgtagtctagttggtcaggatactcggctctcacccgagagacccgggttcaagtcccggcaacggaatccttttttgtta 438  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||   ||||||||||    
T  42321475 aatccgttgtagtctagttggtcaggatattcggctctcacccgaaagacccgggttcaagtcccggcaacggaaattttttttgtta 42321562  T

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