View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10187_low_31 (Length: 319)

Name: NF10187_low_31
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10187_low_31
NF10187_low_31
[»] chr2 (1 HSPs)
chr2 (27-237)||(28770637-28770848)
[»] scaffold0016 (1 HSPs)
scaffold0016 (47-162)||(102435-102548)
[»] chr4 (2 HSPs)
chr4 (94-237)||(34670528-34670672)
chr4 (48-154)||(873467-873571)
[»] chr3 (2 HSPs)
chr3 (27-187)||(25517005-25517163)
chr3 (94-161)||(4386859-4386924)
[»] scaffold1444 (1 HSPs)
scaffold1444 (122-153)||(1291-1322)
[»] chr7 (1 HSPs)
chr7 (186-232)||(761356-761402)
[»] chr1 (2 HSPs)
chr1 (48-102)||(8281362-8281416)
chr1 (84-161)||(10997036-10997111)


Alignment Details
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 27 - 237
Target Start/End: Complemental strand, 28770848 - 28770637
Alignment:
Q  27 aaaaatgaccaactctgtgtgagagaacaactctctgatcttctatgataacaatgttacaaatatattacaagaagttagcttttaaaagcttgcaaaa 126  Q
    |||||||||| ||||||   || ||| || ||||| |||| |||| ||||| |||| |||||| |||||||||||| |||||  |||||||||  ||||     
T  28770848 aaaaatgacctactctggaggatagagcagctctccgatcctctacgataagaatgatacaaagatattacaagaaattagc--ttaaaagctcacaaag 28770751  T
Q  127 aacaaaccctaatttctactcatttttcaaatcacagacgctcaaaacgaaccctaa---aaaacactaaaggaaactttatgatccttcctcaaatgag 223  Q
    ||||||| ||||||||||| |||||||||| ||| | || |||  || ||| |||||   |||||||||||||||||||| | |||||||  | ||||||    
T  28770750 aacaaactctaatttctacccatttttcaagtcatacacactcgcaatgaatcctaagagaaaacactaaaggaaacttttttatccttcagctaatgag 28770651  T
Q  224 atatcactatccaa 237  Q
    || |||||| ||||    
T  28770650 atctcactacccaa 28770637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 47 - 162
Target Start/End: Complemental strand, 102548 - 102435
Alignment:
Q  47 gagagaacaactctctgatcttctatgataacaatgttacaaatatattacaagaagttagcttttaaaagcttgcaaaaaacaaaccctaatttctact 146  Q
    ||||||||||||||||||||  | ||||||| | || |||||| |  ||||||||| ||| |||  |||||||  ||||||||||||||||||||||||     
T  102548 gagagaacaactctctgatccacaatgataagagtgatacaaagaggttacaagaaattatctt--aaaagctcacaaaaaacaaaccctaatttctacc 102451  T
Q  147 catttttcaaatcaca 162  Q
    |||||||||| |||||    
T  102450 catttttcaagtcaca 102435  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 94 - 237
Target Start/End: Complemental strand, 34670672 - 34670528
Alignment:
Q  94 ttacaagaagttagcttttaaaagcttgcaaaaaacaaaccctaatttctactcatttttcaaatcacagacgctcaaaacgaaccctaa---aaaacac 190  Q
    ||||||||| |||||||  || ||||  |||| |||||| | |||||||||  |||||||||| ||||  || |||| || ||| |||||   |||||||    
T  34670672 ttacaagaaattagctt--aatagctcacaaagaacaaatcataatttctatccatttttcaagtcactcacactcacaatgaatcctaagagaaaacac 34670575  T
Q  191 taaaggaaactttatgatccttcctcaaatgagatatcactatccaa 237  Q
    ||||| |||||||  ||||||||||| |||||||| |||||| ||||    
T  34670574 taaagaaaacttttagatccttcctctaatgagatctcactacccaa 34670528  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 154
Target Start/End: Complemental strand, 873571 - 873467
Alignment:
Q  48 agagaacaactctctgatcttctatgataacaatgttacaaatatattacaagaagttagcttttaaaagcttgcaaaaaacaaaccctaatttctactc 147  Q
    ||||| |||||||| ||||  ||||||| | |||| ||| ||||  ||||||||| ||| |||  ||||||| ||||| |||||| ||||||||||||||    
T  873571 agagagcaactctccgatccactatgattagaatgataccaataggttacaagaaattaactt--aaaagctcgcaaataacaaatcctaatttctactc 873474  T
Q  148 atttttc 154  Q
    || ||||    
T  873473 atatttc 873467  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 27 - 187
Target Start/End: Original strand, 25517005 - 25517163
Alignment:
Q  27 aaaaatgaccaactctgtgtgagagaacaactctctgatcttctatgataacaatgttacaaatatattacaagaagttagcttttaaaagcttgcaaaa 126  Q
    |||||||| ||||| || | |||||||||||||||| || |  | |||||| |||| || |  ||  ||| ||||| |||||||  |||||||  ||||     
T  25517005 aaaaatgatcaactttgagagagagaacaactctctaatttattgtgataagaatgataaatttaggttataagaaattagctt--aaaagctcacaaag 25517102  T
Q  127 aacaaaccctaatttctactcatttttcaaatcacagacgctcaaaacgaaccctaaaaaa 187  Q
    |||||||||||||||||||| ||||||||| ||||  || |||| |  |||||||||||||    
T  25517103 aacaaaccctaatttctacttatttttcaagtcacccacactcacagtgaaccctaaaaaa 25517163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 4386924 - 4386859
Alignment:
Q  94 ttacaagaagttagcttttaaaagcttgcaaaaaacaaaccctaatttctactcatttttcaaatcac 161  Q
    ||||||||| |||||||  |||||||  |||| |||||| ||||||||||||||||||||||| ||||    
T  4386924 ttacaagaaattagctt--aaaagctcacaaagaacaaaacctaatttctactcatttttcaagtcac 4386859  T

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Target: scaffold1444 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 122 - 153
Target Start/End: Original strand, 1291 - 1322
Alignment:
Q  122 caaaaaacaaaccctaatttctactcattttt 153  Q
    ||||||||||||||||||||||||||||||||    
T  1291 caaaaaacaaaccctaatttctactcattttt 1322  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 761356 - 761402
Alignment:
Q  186 aacactaaaggaaactttatgatccttcctcaaatgagatatcacta 232  Q
    ||||||||| |||||||| |||||||||||| |||||||| ||||||    
T  761356 aacactaaatgaaactttttgatccttcctctaatgagatctcacta 761402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 8281362 - 8281416
Alignment:
Q  48 agagaacaactctctgatcttctatgataacaatgttacaaatatattacaagaa 102  Q
    |||||| ||||||||||||  ||||||||| |||| ||||||||| |||||||||    
T  8281362 agagaataactctctgatccactatgataagaatgatacaaatatgttacaagaa 8281416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 84 - 161
Target Start/End: Original strand, 10997036 - 10997111
Alignment:
Q  84 tacaaatatattacaagaagttagcttttaaaagcttgcaaaaaacaaaccctaatttctactcatttttcaaatcac 161  Q
    ||||||||| ||||||||| ||| |||  ||||| |  |||| ||||||||||||||||||| |||||||||| ||||    
T  10997036 tacaaatatgttacaagaaattaactt--aaaagataacaaataacaaaccctaatttctacccatttttcaagtcac 10997111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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