View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10187_low_35 (Length: 293)
Name: NF10187_low_35
Description: NF10187
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10187_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 244; Significance: 1e-135; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 35280043 - 35280322
Alignment:
| Q |
1 |
tctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaatgaagaagtcctttatta |
100 |
Q |
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| T |
35280043 |
tctaaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaattaagaagtcctttatta |
35280142 |
T |
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| Q |
101 |
gcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgctt |
200 |
Q |
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| T |
35280143 |
gcaactagatccctataataattgttgtcaaaagtaacaggagagacagaatcaagaggagccaaatttgtgtcaccgccagaaagaggacagtttgctt |
35280242 |
T |
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| Q |
201 |
ttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaaattgacattctgcttggcct |
280 |
Q |
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| T |
35280243 |
ttcttaaggttgcaaagtttgtgtcgatgttggtttcattgtatatgcgatttcggaaaaattgacattctgcttggcct |
35280322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 3 - 276
Target Start/End: Original strand, 35289390 - 35289663
Alignment:
| Q |
3 |
taaaagcaaaaccatttatactataagccctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaatgaagaagtcctttattagc |
102 |
Q |
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| T |
35289390 |
taaaagcaatattatttctactataagtcctaaccaaagaaacttgagaaccaacaccattgaaaagagcttgatcagaatgaagaagtcctttattagc |
35289489 |
T |
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| Q |
103 |
aacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgctttt |
202 |
Q |
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| T |
35289490 |
aacaaggtcattatagtaattgttgtcaaaagtaactggagagacagaatcaagaggtgccaaatttatgtcaccaccagaagtaggacaatttgatttt |
35289589 |
T |
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| Q |
203 |
cttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaaattgacattctgcttg |
276 |
Q |
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| T |
35289590 |
cttaaggttgcaaagtttgtgtcaatgttggtttcgttgtatatacgagttctgaaaaattgacattctgcttg |
35289663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 31 - 267
Target Start/End: Original strand, 35275306 - 35275542
Alignment:
| Q |
31 |
cctaaccaaagaaactggagaaccaacaccattgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtca |
130 |
Q |
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| T |
35275306 |
cctaaccaaagaaatttgagaaccaccaccattgaaaagaacttgatcagaatgtagaagacctttattagcaataaggtccttataataattgttgtca |
35275405 |
T |
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| Q |
131 |
aaagtaactggagagacagaatcaagaggtgccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgt |
230 |
Q |
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| T |
35275406 |
aatttagttggagtgacagaatcaaagggtgctaaattggtgtcaccaccagaggtagggcaatttctttttcttaaggtagccaagtttctgtcaatgt |
35275505 |
T |
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| Q |
231 |
ttgtttcattgtatatgcgatttcggaaaaattgaca |
267 |
Q |
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| T |
35275506 |
tggcttcattgtgtatgcgatttctgaaaaattgaca |
35275542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 61 - 280
Target Start/End: Original strand, 35307246 - 35307465
Alignment:
| Q |
61 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
160 |
Q |
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| T |
35307246 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaaggtttttatagtaattgttatcaaaacttgttggagtgagagtatcaagtggt |
35307345 |
T |
|
| Q |
161 |
gccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaa |
260 |
Q |
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| T |
35307346 |
gctaaattggtgtcaccaccagaaagaggacaatttgatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
35307445 |
T |
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| Q |
261 |
attgacattctgcttggcct |
280 |
Q |
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| T |
35307446 |
attggcactctccttggcct |
35307465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 61 - 280
Target Start/End: Original strand, 35322247 - 35322466
Alignment:
| Q |
61 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
160 |
Q |
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| T |
35322247 |
attgaaaagagcttgatcagaatggaaaagacctttgcttgcaacaagatttttatagtaattgttgtcaaaatttgttggagtgagagtgtcaagaggt |
35322346 |
T |
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| Q |
161 |
gccaaatttgtgtcaccaccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcggaaaa |
260 |
Q |
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| T |
35322347 |
gctaaattggtgtcaccaccagaaagaggacaatttaatttccttaaggttgcaaagtttgtgtcaatgttggtttcattgtatatgcgatttctgaaaa |
35322446 |
T |
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| Q |
261 |
attgacattctgcttggcct |
280 |
Q |
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| T |
35322447 |
attggcactctccttggcct |
35322466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 61 - 280
Target Start/End: Original strand, 35311589 - 35311811
Alignment:
| Q |
61 |
attgaaaagtgcttgatcagaatgaagaagtcctttattagcaacaaggtccctatagtaattattgtcaaaagtaactggagagacagaatcaagaggt |
160 |
Q |
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||||||||| ||||||||||||| | || ||||| | |||||||||| |||| ||||| ||||||||| | ||||| || || |||||| ||| |
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| T |
35311589 |
attgaaaaggacttgatcagaatggaatagacctttgcttgcaacaaggtttttataataattgttgtcaaaacttgttggagtgagagtatcaagtggt |
35311688 |
T |
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| Q |
161 |
gccaaatttgtgtcac---caccagaaagaggacagtttgcttttcttaaggttgcaaagtttgtgtcgatgtttgtttcattgtatatgcgatttcgga |
257 |
Q |
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| T |
35311689 |
gctaaattggtgtcattgtcactagaaaaagaacagttggattttcttaaggttgcgaagtttgtgtcaatgttggtttcattgtatatgcgagttctga |
35311788 |
T |
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| Q |
258 |
aaaattgacattctgcttggcct |
280 |
Q |
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| ||| |||| ||| |||||||| |
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| T |
35311789 |
acaatcgacactctccttggcct |
35311811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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